Wall clock time and date at job start Mon Mar 30 2020 01:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48503 * 109.47064 * 269.99723 * 3 2 1 5 5 H 1.48506 * 109.47308 * 29.99608 * 3 2 1 6 6 H 1.48497 * 109.47213 * 149.99809 * 3 2 1 7 7 C 1.37873 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00432 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99970 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46998 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46613 * 180.02562 * 10 9 7 12 12 C 1.48561 * 111.00005 * 290.12401 * 11 10 9 13 13 C 1.54385 * 104.59469 * 200.96422 * 12 11 10 14 14 C 1.54259 * 105.05743 * 23.85227 * 13 12 11 15 15 H 1.08997 * 110.32446 * 241.00057 * 14 13 12 16 16 C 1.53006 * 110.32167 * 118.89739 * 14 13 12 17 17 N 1.46894 * 109.47059 * 65.20803 * 16 14 13 18 18 C 1.47019 * 111.00206 * 75.93574 * 17 16 14 19 19 C 1.53093 * 109.25907 * 182.39012 * 18 17 16 20 20 O 1.43018 * 109.26310 * 303.15502 * 19 18 17 21 21 C 1.43018 * 113.73638 * 58.66491 * 20 19 18 22 22 C 1.47019 * 111.00049 * 199.57417 * 17 16 14 23 23 C 1.48565 * 110.99362 * 174.70898 * 11 10 9 24 24 H 0.97007 * 119.99415 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46933 * 60.00458 * 9 7 2 26 26 H 1.08996 * 109.47708 * 300.00352 * 9 7 2 27 27 H 1.08993 * 109.47029 * 60.00374 * 10 9 7 28 28 H 1.08995 * 109.47024 * 299.99983 * 10 9 7 29 29 H 1.09000 * 110.40645 * 82.18834 * 12 11 10 30 30 H 1.08997 * 110.51206 * 319.79219 * 12 11 10 31 31 H 1.08999 * 110.32351 * 264.96343 * 13 12 11 32 32 H 1.08992 * 110.32444 * 142.74905 * 13 12 11 33 33 H 1.09006 * 109.47049 * 305.20897 * 16 14 13 34 34 H 1.09001 * 109.46997 * 185.21095 * 16 14 13 35 35 H 1.08998 * 109.49967 * 62.45809 * 18 17 16 36 36 H 1.09000 * 109.54376 * 302.35139 * 18 17 16 37 37 H 1.08999 * 109.50542 * 183.21636 * 19 18 17 38 38 H 1.09005 * 109.50657 * 63.08926 * 19 18 17 39 39 H 1.09003 * 109.50211 * 61.27352 * 21 20 19 40 40 H 1.08999 * 109.50584 * 181.39482 * 21 20 19 41 41 H 1.09000 * 109.50113 * 297.53906 * 22 17 16 42 42 H 1.08996 * 109.50762 * 57.67511 * 22 17 16 43 43 H 1.08997 * 110.41200 * 40.26079 * 23 11 10 44 44 H 1.08997 * 110.40811 * 277.81526 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6528 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4905 -2.6366 0.0001 12 6 6.0230 -2.1594 -1.3022 13 6 7.4649 -2.7083 -1.3575 14 6 7.4648 -3.9307 -0.4166 15 1 8.1711 -3.7801 0.3998 16 6 7.8163 -5.2003 -1.1947 17 7 9.1972 -5.1066 -1.6867 18 6 10.1604 -5.3383 -0.6005 19 6 11.5825 -5.1728 -1.1428 20 8 11.7767 -6.0701 -2.2394 21 6 10.8558 -5.8720 -3.3155 22 6 9.4264 -6.0447 -2.7953 23 6 6.0229 -4.0176 0.1282 24 1 -0.4849 0.8402 -0.0004 25 1 3.8752 -0.6797 0.8896 26 1 3.8746 -0.6808 -0.8904 27 1 3.6579 -3.1506 -0.8896 28 1 3.6585 -3.1502 0.8903 29 1 6.0295 -1.0699 -1.3339 30 1 5.4320 -2.5595 -2.1260 31 1 8.1699 -1.9570 -1.0019 32 1 7.7153 -3.0128 -2.3737 33 1 7.1361 -5.3087 -2.0396 34 1 7.7221 -6.0661 -0.5391 35 1 10.0344 -6.3489 -0.2119 36 1 9.9893 -4.6171 0.1986 37 1 12.3011 -5.3995 -0.3552 38 1 11.7254 -4.1469 -1.4824 39 1 10.9776 -4.8664 -3.7183 40 1 11.0489 -6.6044 -4.0993 41 1 9.2887 -7.0665 -2.4416 42 1 8.7193 -5.8384 -3.5987 43 1 5.4313 -4.7101 -0.4707 44 1 6.0293 -4.3271 1.1732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129511415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:57 Heat of formation + Delta-G solvation = -63.956890 kcal Electronic energy + Delta-G solvation = -20880.503039 eV Core-core repulsion = 17831.433165 eV Total energy + Delta-G solvation = -3049.069875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77644 -39.79249 -37.00304 -35.48407 -33.84944 -32.13604 -31.28879 -30.29613 -28.35662 -26.27892 -24.98777 -24.37883 -23.06755 -21.65180 -21.42079 -20.43035 -19.01013 -17.58329 -17.16036 -16.96719 -16.47486 -16.33177 -16.01317 -15.86605 -15.57248 -15.21244 -15.10274 -14.75068 -14.41202 -13.94707 -13.72522 -13.43488 -13.20592 -12.98402 -12.94755 -12.64795 -12.37176 -12.27251 -12.04087 -11.82688 -11.79977 -11.65816 -11.57950 -11.42165 -11.37611 -11.28206 -10.77695 -10.62287 -9.39921 -9.36535 -8.31816 -6.36265 1.34724 1.37240 1.50720 2.35377 2.68063 2.97462 3.03700 3.17410 3.77755 3.80137 3.86462 3.97329 4.03747 4.21513 4.24150 4.29443 4.37692 4.39418 4.44077 4.51952 4.60596 4.64363 4.68558 4.74838 4.75614 4.79085 4.83987 4.92624 4.94348 5.02658 5.07035 5.15924 5.25145 5.29676 5.36608 5.45556 5.60989 5.95546 5.97085 6.03214 6.13702 6.19724 6.27459 6.71140 7.28818 8.84898 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046281 B = 0.003138 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.853428 B = 8920.161763 C = 9067.192247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.250 1.250 7 C -0.535 4.535 8 H 0.032 0.968 9 C 0.003 3.997 10 C 0.073 3.927 11 N -0.524 5.524 12 C 0.026 3.974 13 C -0.093 4.093 14 C -0.073 4.073 15 H 0.083 0.917 16 C 0.070 3.930 17 N -0.540 5.540 18 C 0.018 3.982 19 C 0.062 3.938 20 O -0.407 6.407 21 C 0.063 3.937 22 C 0.018 3.982 23 C 0.035 3.965 24 H 0.267 0.733 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.037 0.963 42 H 0.094 0.906 43 H 0.041 0.959 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.442 -11.690 -4.816 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.173 1.173 7 C -0.573 4.573 8 H 0.050 0.950 9 C -0.035 4.035 10 C -0.055 4.055 11 N -0.248 5.248 12 C -0.102 4.102 13 C -0.131 4.131 14 C -0.093 4.093 15 H 0.101 0.899 16 C -0.058 4.058 17 N -0.265 5.265 18 C -0.111 4.111 19 C -0.014 4.014 20 O -0.326 6.326 21 C -0.014 4.014 22 C -0.110 4.110 23 C -0.093 4.093 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.130 0.870 41 H 0.056 0.944 42 H 0.112 0.888 43 H 0.059 0.941 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 25.670 -10.918 -4.549 28.264 hybrid contribution -1.335 -0.423 -0.252 1.423 sum 24.335 -11.341 -4.802 27.274 Atomic orbital electron populations 1.70066 1.08241 1.28252 1.52503 1.25979 0.95617 1.03487 0.93942 0.85633 0.79434 0.78177 0.79277 1.19014 1.20705 1.17342 1.21424 0.91919 0.93241 1.50731 0.94951 1.19371 0.93361 0.94273 0.96476 1.21960 0.86646 0.97713 0.99207 1.65394 1.07876 1.19837 1.31705 1.23194 0.96480 1.00521 0.89993 1.22133 0.93994 0.96693 1.00275 1.21755 0.95000 0.94724 0.97775 0.89862 1.22107 0.89030 0.96107 0.98528 1.62145 1.03312 1.51665 1.09394 1.22848 0.93075 1.00689 0.94441 1.22772 0.95491 0.93844 0.89313 1.87955 1.56387 1.59078 1.29184 1.22775 0.86806 1.02569 0.89252 1.22831 0.98944 0.94273 0.94971 1.23165 0.95199 0.89606 1.01367 0.92380 0.96215 0.96692 0.96139 0.92176 0.91445 0.94741 0.91159 0.90098 0.90819 0.94022 0.94440 0.88808 0.87052 0.92135 0.92119 0.86985 0.94440 0.88770 0.94067 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 2 C 0.01 0.40 5.47 84.65 0.46 0.86 16 3 Si 0.95 45.49 27.47 68.60 1.88 47.38 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 7 C -0.53 -31.78 9.66 25.60 0.25 -31.53 16 8 H 0.03 2.10 7.99 -2.91 -0.02 2.07 16 9 C 0.00 0.15 4.10 29.85 0.12 0.27 16 10 C 0.07 3.03 4.75 86.30 0.41 3.44 16 11 N -0.52 -17.85 5.37 -881.47 -4.73 -22.59 16 12 C 0.03 0.79 5.73 86.45 0.50 1.29 16 13 C -0.09 -2.12 6.45 31.49 0.20 -1.92 16 14 C -0.07 -1.52 3.12 -9.90 -0.03 -1.55 16 15 H 0.08 1.65 6.87 -2.39 -0.02 1.63 16 16 C 0.07 1.23 4.10 86.31 0.35 1.59 16 17 N -0.54 -8.83 4.32 -895.21 -3.87 -12.70 16 18 C 0.02 0.26 5.47 86.31 0.47 0.73 16 19 C 0.06 0.88 7.01 72.01 0.50 1.38 16 20 O -0.41 -7.19 10.83 -148.98 -1.61 -8.80 16 21 C 0.06 0.86 7.01 72.01 0.50 1.37 16 22 C 0.02 0.26 5.60 86.31 0.48 0.74 16 23 C 0.04 0.92 6.03 86.45 0.52 1.44 16 24 H 0.27 15.82 8.31 -92.70 -0.77 15.04 16 25 H 0.02 0.98 7.20 -2.38 -0.02 0.96 16 26 H 0.01 0.71 6.68 -2.39 -0.02 0.70 16 27 H 0.02 0.86 7.88 -2.39 -0.02 0.85 16 28 H 0.06 2.53 8.13 -2.39 -0.02 2.51 16 29 H 0.07 2.18 7.76 -2.39 -0.02 2.16 16 30 H 0.03 1.08 7.83 -2.39 -0.02 1.06 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.71 7.60 -2.39 -0.02 1.69 16 33 H 0.07 1.33 7.86 -2.38 -0.02 1.31 16 34 H 0.04 0.71 7.99 -2.39 -0.02 0.69 16 35 H 0.04 0.59 8.13 -2.39 -0.02 0.57 16 36 H 0.09 1.29 6.81 -2.39 -0.02 1.28 16 37 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 41 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.09 1.20 8.02 -2.39 -0.02 1.18 16 43 H 0.04 1.08 7.72 -2.39 -0.02 1.06 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -68.05 336.96 -2.40 -70.45 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.88 Total: 8.38 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 4.75 Total: -21.88 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -8.30 Total: -95.52 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -1.61 Total: -8.80 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.38 kcal Total: -68.05 -2.40 -70.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129511415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.493 kcal (2) G-P(sol) polarization free energy of solvation -68.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds