Wall clock time and date at job start Mon Mar 30 2020 01:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47396 * 2 1 4 4 C 1.50700 * 109.46990 * 120.00711 * 2 1 3 5 5 H 1.07997 * 120.00610 * 119.99766 * 4 2 1 6 6 C 1.37882 * 119.99794 * 299.99407 * 4 2 1 7 7 N 1.31507 * 120.00302 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99868 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47557 * 89.99603 * 8 6 4 10 10 H 1.48501 * 109.47080 * 209.99568 * 8 6 4 11 11 H 1.48502 * 109.47249 * 329.99420 * 8 6 4 12 12 N 1.46906 * 109.47036 * 240.00398 * 2 1 3 13 13 C 1.46901 * 110.99793 * 183.95785 * 12 2 1 14 14 C 1.46898 * 110.99820 * 60.00102 * 12 2 1 15 15 C 1.50706 * 109.46563 * 189.99919 * 14 12 2 16 16 O 1.21276 * 120.00368 * 359.97438 * 15 14 12 17 17 N 1.34778 * 119.99391 * 180.02562 * 15 14 12 18 18 C 1.46928 * 120.63511 * 359.72153 * 17 15 14 19 19 C 1.53617 * 108.54646 * 126.36932 * 18 17 15 20 20 C 1.53045 * 109.24400 * 54.85459 * 19 18 17 21 21 C 1.52993 * 109.45241 * 178.49908 * 20 19 18 22 22 C 1.53045 * 109.53508 * 298.51510 * 20 19 18 23 23 C 1.46935 * 120.62834 * 180.02562 * 17 15 14 24 24 H 1.09006 * 109.46931 * 59.99390 * 1 2 3 25 25 H 1.08992 * 109.47626 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47248 * 300.00196 * 1 2 3 27 27 H 0.97003 * 120.00699 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 30 30 H 1.09004 * 109.46970 * 179.97438 * 13 12 2 31 31 H 1.08994 * 109.47410 * 309.99936 * 14 12 2 32 32 H 1.08999 * 109.47216 * 70.00266 * 14 12 2 33 33 H 1.08998 * 109.58370 * 246.20523 * 18 17 15 34 34 H 1.09002 * 109.58312 * 6.62655 * 18 17 15 35 35 H 1.09009 * 109.63403 * 294.86784 * 19 18 17 36 36 H 1.08998 * 109.43747 * 174.72447 * 19 18 17 37 37 H 1.09006 * 109.45471 * 58.53016 * 20 19 18 38 38 H 1.08993 * 109.47359 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47132 * 300.06407 * 21 20 19 40 40 H 1.09001 * 109.46910 * 60.06357 * 21 20 19 41 41 H 1.08993 * 109.49945 * 301.40584 * 22 20 19 42 42 H 1.09006 * 109.49203 * 181.31431 * 22 20 19 43 43 H 1.09001 * 109.58202 * 353.36840 * 23 17 15 44 44 H 1.08998 * 109.58641 * 113.65397 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1371 -0.8598 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9949 3.9069 11 1 0.8473 2.1765 1.4922 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5486 -0.0262 -2.4211 15 6 1.8580 -0.8910 -3.6160 16 8 2.4162 -1.9569 -3.4649 17 7 1.5151 -0.4791 -4.8526 18 6 0.8339 0.8075 -5.0512 19 6 1.6279 1.6271 -6.0796 20 6 1.7989 0.8030 -7.3578 21 6 2.5568 1.6290 -8.3990 22 6 2.5881 -0.4701 -7.0441 23 6 1.8095 -1.3113 -6.0272 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.9025 -0.5287 4.4375 28 1 3.8029 -1.3532 -0.3067 29 1 3.9187 0.2051 -1.1591 30 1 3.8209 -1.3117 -2.0860 31 1 0.4723 0.1326 -2.3564 32 1 2.0519 0.9347 -2.5280 33 1 -0.1766 0.6327 -5.4207 34 1 0.7910 1.3480 -4.1056 35 1 2.6083 1.8747 -5.6725 36 1 1.0861 2.5449 -6.3082 37 1 0.8182 0.5348 -7.7508 38 1 2.6784 1.0426 -9.3096 39 1 1.9949 2.5359 -8.6225 40 1 3.5377 1.8969 -8.0063 41 1 3.5594 -0.2029 -6.6280 42 1 2.7297 -1.0451 -7.9594 43 1 2.4105 -2.1692 -5.7258 44 1 0.8769 -1.6570 -6.4731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129552830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:41 Heat of formation + Delta-G solvation = -24.504362 kcal Electronic energy + Delta-G solvation = -21608.520205 eV Core-core repulsion = 18561.161120 eV Total energy + Delta-G solvation = -3047.359085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17256 -37.98071 -36.48430 -33.99549 -32.65306 -31.42422 -30.16138 -28.89801 -27.53984 -24.80497 -24.00357 -23.54317 -22.84361 -20.71561 -19.58415 -18.75014 -17.06291 -16.75433 -15.77537 -15.50542 -14.90186 -14.87831 -14.49532 -14.25525 -13.95616 -13.61400 -13.52371 -13.31943 -12.87806 -12.77286 -12.41409 -12.19964 -12.12978 -11.99313 -11.65063 -11.47439 -11.16659 -11.03123 -10.89530 -10.72807 -10.62809 -10.54820 -10.50606 -10.10488 -9.53401 -9.28497 -8.99173 -8.57604 -8.55116 -7.31576 -6.04619 -4.03288 2.93055 3.02814 3.26282 3.34447 3.38151 4.40022 4.43270 4.45692 4.53287 4.73346 4.88693 4.98360 5.06398 5.19905 5.23606 5.26974 5.35317 5.40951 5.51152 5.54907 5.61665 5.67314 5.70058 5.73801 5.83714 5.88846 5.90816 6.14802 6.16651 6.30531 6.40724 6.44411 6.57045 6.65807 6.78262 7.03841 7.27042 7.45567 7.59638 7.94944 8.07555 8.50742 8.67287 9.03983 9.56375 11.08211 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034769 B = 0.004304 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.128293 B = 6503.549709 C = 6909.446342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.182 3.818 3 H -0.002 1.002 4 C -0.504 4.504 5 H 0.085 0.915 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.509 5.509 13 C 0.034 3.966 14 C 0.031 3.969 15 C 0.518 3.482 16 O -0.516 6.516 17 N -0.622 5.622 18 C 0.107 3.893 19 C -0.131 4.131 20 C -0.093 4.093 21 C -0.147 4.147 22 C -0.129 4.129 23 C 0.112 3.888 24 H 0.027 0.973 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.264 0.736 28 H 0.082 0.918 29 H 0.006 0.994 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.571 6.806 -22.911 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.075 3.925 3 H 0.016 0.984 4 C -0.542 4.542 5 H 0.103 0.897 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.234 5.234 13 C -0.114 4.114 14 C -0.101 4.101 15 C 0.306 3.694 16 O -0.390 6.390 17 N -0.359 5.359 18 C -0.016 4.016 19 C -0.169 4.169 20 C -0.111 4.111 21 C -0.204 4.204 22 C -0.167 4.167 23 C -0.011 4.011 24 H 0.046 0.954 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.024 0.976 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.440 5.728 -22.578 23.421 hybrid contribution -0.422 1.789 0.170 1.846 sum -2.862 7.517 -22.408 23.808 Atomic orbital electron populations 1.22244 0.98605 1.01532 0.98097 1.19742 0.91411 0.92588 0.88766 0.98446 1.20982 1.31901 1.13624 0.87725 0.89707 1.24924 0.95873 0.96622 0.95773 1.69877 1.45732 1.40243 0.97854 0.86883 0.80813 0.83808 0.76803 1.20501 1.22470 1.19502 1.61693 1.11017 1.51022 0.99658 1.22372 0.86937 0.98843 1.03212 1.22089 1.02486 0.94801 0.90687 1.20913 0.77813 0.87073 0.83558 1.90647 1.40647 1.22972 1.84774 1.48187 1.60688 1.20674 1.06337 1.21807 0.95540 0.84105 1.00189 1.22071 1.01253 0.98240 0.95320 1.21124 0.99445 0.95294 0.95255 1.21824 1.00383 0.99712 0.98475 1.21988 0.99387 0.96339 0.98967 1.21505 0.99741 0.94337 0.85467 0.95432 0.91828 0.93850 0.92615 0.89950 0.97559 0.91763 0.88166 0.93212 0.91419 0.89513 0.91363 0.90797 0.91073 0.92702 0.92684 0.92690 0.91516 0.90969 0.89007 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.47 37.16 0.31 -2.91 16 2 C 0.18 4.39 1.65 -68.86 -0.11 4.28 16 3 H 0.00 -0.05 7.20 -51.93 -0.37 -0.42 16 4 C -0.50 -14.38 8.51 -34.44 -0.29 -14.67 16 5 H 0.09 2.66 6.64 -52.49 -0.35 2.31 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 8 Si 0.89 21.86 24.37 -169.99 -4.14 17.72 16 9 H -0.28 -6.66 6.87 56.52 0.39 -6.28 16 10 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 12 N -0.51 -11.26 4.36 -237.72 -1.04 -12.30 16 13 C 0.03 0.74 8.88 60.07 0.53 1.28 16 14 C 0.03 0.54 3.61 -4.97 -0.02 0.52 16 15 C 0.52 8.76 7.39 -10.98 -0.08 8.68 16 16 O -0.52 -10.66 13.74 5.56 0.08 -10.58 16 17 N -0.62 -7.90 2.97 -172.47 -0.51 -8.41 16 18 C 0.11 1.01 6.37 -3.49 -0.02 0.99 16 19 C -0.13 -1.04 5.38 -26.39 -0.14 -1.18 16 20 C -0.09 -0.69 2.68 -90.58 -0.24 -0.93 16 21 C -0.15 -0.95 9.19 37.15 0.34 -0.61 16 22 C -0.13 -1.11 5.36 -26.59 -0.14 -1.26 16 23 C 0.11 1.23 6.43 -3.69 -0.02 1.21 16 24 H 0.03 0.49 6.20 -51.93 -0.32 0.17 16 25 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.08 1.96 6.23 -51.93 -0.32 1.63 16 29 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 1.34 5.82 -51.93 -0.30 1.04 16 31 H 0.10 1.60 5.62 -51.93 -0.29 1.31 16 32 H 0.05 0.79 7.68 -51.93 -0.40 0.40 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.82 5.93 -51.93 -0.31 0.51 16 35 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -32.75 326.90 -7.36 -40.11 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.46 Total: -1.90 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 0.01 Total: -2.69 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.77 Total: -47.60 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.75 -7.36 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129552830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.608 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds