Wall clock time and date at job start Mon Mar 30 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47396 * 2 1 4 4 C 1.50700 * 109.46990 * 120.00711 * 2 1 3 5 5 H 1.07997 * 120.00610 * 119.99766 * 4 2 1 6 6 C 1.37882 * 119.99794 * 299.99407 * 4 2 1 7 7 N 1.31507 * 120.00302 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99868 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47557 * 89.99603 * 8 6 4 10 10 H 1.48501 * 109.47080 * 209.99568 * 8 6 4 11 11 H 1.48502 * 109.47249 * 329.99420 * 8 6 4 12 12 N 1.46906 * 109.47036 * 240.00398 * 2 1 3 13 13 C 1.46901 * 110.99793 * 183.95785 * 12 2 1 14 14 C 1.46898 * 110.99820 * 60.00102 * 12 2 1 15 15 C 1.50706 * 109.46563 * 189.99919 * 14 12 2 16 16 O 1.21276 * 120.00368 * 359.97438 * 15 14 12 17 17 N 1.34778 * 119.99391 * 180.02562 * 15 14 12 18 18 C 1.46928 * 120.63511 * 359.72153 * 17 15 14 19 19 C 1.53617 * 108.54646 * 126.36932 * 18 17 15 20 20 C 1.53045 * 109.24400 * 54.85459 * 19 18 17 21 21 C 1.52993 * 109.45241 * 178.49908 * 20 19 18 22 22 C 1.53045 * 109.53508 * 298.51510 * 20 19 18 23 23 C 1.46935 * 120.62834 * 180.02562 * 17 15 14 24 24 H 1.09006 * 109.46931 * 59.99390 * 1 2 3 25 25 H 1.08992 * 109.47626 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47248 * 300.00196 * 1 2 3 27 27 H 0.97003 * 120.00699 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 30 30 H 1.09004 * 109.46970 * 179.97438 * 13 12 2 31 31 H 1.08994 * 109.47410 * 309.99936 * 14 12 2 32 32 H 1.08999 * 109.47216 * 70.00266 * 14 12 2 33 33 H 1.08998 * 109.58370 * 246.20523 * 18 17 15 34 34 H 1.09002 * 109.58312 * 6.62655 * 18 17 15 35 35 H 1.09009 * 109.63403 * 294.86784 * 19 18 17 36 36 H 1.08998 * 109.43747 * 174.72447 * 19 18 17 37 37 H 1.09006 * 109.45471 * 58.53016 * 20 19 18 38 38 H 1.08993 * 109.47359 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47132 * 300.06407 * 21 20 19 40 40 H 1.09001 * 109.46910 * 60.06357 * 21 20 19 41 41 H 1.08993 * 109.49945 * 301.40584 * 22 20 19 42 42 H 1.09006 * 109.49203 * 181.31431 * 22 20 19 43 43 H 1.09001 * 109.58202 * 353.36840 * 23 17 15 44 44 H 1.08998 * 109.58641 * 113.65397 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1371 -0.8598 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9949 3.9069 11 1 0.8473 2.1765 1.4922 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5486 -0.0262 -2.4211 15 6 1.8580 -0.8910 -3.6160 16 8 2.4162 -1.9569 -3.4649 17 7 1.5151 -0.4791 -4.8526 18 6 0.8339 0.8075 -5.0512 19 6 1.6279 1.6271 -6.0796 20 6 1.7989 0.8030 -7.3578 21 6 2.5568 1.6290 -8.3990 22 6 2.5881 -0.4701 -7.0441 23 6 1.8095 -1.3113 -6.0272 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.9025 -0.5287 4.4375 28 1 3.8029 -1.3532 -0.3067 29 1 3.9187 0.2051 -1.1591 30 1 3.8209 -1.3117 -2.0860 31 1 0.4723 0.1326 -2.3564 32 1 2.0519 0.9347 -2.5280 33 1 -0.1766 0.6327 -5.4207 34 1 0.7910 1.3480 -4.1056 35 1 2.6083 1.8747 -5.6725 36 1 1.0861 2.5449 -6.3082 37 1 0.8182 0.5348 -7.7508 38 1 2.6784 1.0426 -9.3096 39 1 1.9949 2.5359 -8.6225 40 1 3.5377 1.8969 -8.0063 41 1 3.5594 -0.2029 -6.6280 42 1 2.7297 -1.0451 -7.9594 43 1 2.4105 -2.1692 -5.7258 44 1 0.8769 -1.6570 -6.4731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129552830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:40 Heat of formation + Delta-G solvation = -47.735554 kcal Electronic energy + Delta-G solvation = -21609.527585 eV Core-core repulsion = 18561.161120 eV Total energy + Delta-G solvation = -3048.366465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30822 -39.14068 -38.02121 -34.91622 -34.70398 -32.40146 -31.88894 -30.01112 -28.70401 -26.71869 -25.59222 -24.28166 -23.90346 -21.80994 -21.03473 -19.85733 -18.86857 -18.27958 -17.07513 -16.82021 -16.44244 -15.91732 -15.61362 -15.41183 -15.17627 -14.90330 -14.70279 -14.60132 -14.33762 -14.09413 -13.82927 -13.53183 -13.38691 -12.78865 -12.74831 -12.66923 -12.64379 -12.51413 -12.31716 -12.15282 -12.02140 -11.77475 -11.42428 -11.34742 -11.28801 -11.07292 -10.73520 -10.60279 -9.60137 -9.00894 -8.26596 -6.31442 1.32347 1.37513 1.48414 1.65591 1.97229 2.33743 3.05981 3.21250 3.59915 3.82430 3.88753 3.96008 4.15988 4.20010 4.30024 4.36797 4.43443 4.48014 4.53535 4.58546 4.63657 4.75390 4.77900 4.79015 4.85741 4.88836 4.94042 4.99160 5.00000 5.10900 5.12604 5.20090 5.24414 5.38773 5.42144 5.54831 5.64376 5.65009 5.97864 6.26722 6.40502 6.68868 6.75378 7.26751 7.33273 8.90308 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034769 B = 0.004304 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.128293 B = 6503.549709 C = 6909.446342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.186 3.814 3 H 0.001 0.999 4 C -0.513 4.513 5 H 0.034 0.966 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.955 3.045 9 H -0.262 1.262 10 H -0.299 1.299 11 H -0.243 1.243 12 N -0.532 5.532 13 C 0.047 3.953 14 C 0.033 3.967 15 C 0.514 3.486 16 O -0.568 6.568 17 N -0.612 5.612 18 C 0.098 3.902 19 C -0.127 4.127 20 C -0.090 4.090 21 C -0.144 4.144 22 C -0.122 4.122 23 C 0.108 3.892 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.266 0.734 28 H 0.045 0.955 29 H 0.017 0.983 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.937 9.775 -25.649 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.078 3.922 3 H 0.018 0.982 4 C -0.551 4.551 5 H 0.052 0.948 6 C -0.188 4.188 7 N -0.592 5.592 8 Si 0.781 3.219 9 H -0.188 1.188 10 H -0.227 1.227 11 H -0.166 1.166 12 N -0.257 5.257 13 C -0.102 4.102 14 C -0.098 4.098 15 C 0.303 3.697 16 O -0.446 6.446 17 N -0.347 5.347 18 C -0.024 4.024 19 C -0.165 4.165 20 C -0.108 4.108 21 C -0.201 4.201 22 C -0.160 4.160 23 C -0.014 4.014 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.826 8.729 -25.391 27.280 hybrid contribution 0.381 0.781 0.919 1.265 sum -4.444 9.510 -24.473 26.629 Atomic orbital electron populations 1.22141 0.96289 1.01491 1.00159 1.19586 0.93094 0.91816 0.87675 0.98177 1.21236 1.31170 1.12400 0.90336 0.94776 1.25877 0.97486 1.00397 0.95069 1.70053 1.47829 1.42684 0.98618 0.85765 0.79134 0.79490 0.77476 1.18779 1.22719 1.16626 1.61530 1.10804 1.52326 1.01005 1.22162 0.87550 0.98827 1.01618 1.22166 1.03685 0.95287 0.88667 1.20869 0.77676 0.86376 0.84787 1.90633 1.43300 1.25022 1.85670 1.48237 1.59342 1.21782 1.05334 1.22145 0.96517 0.82527 1.01188 1.22065 1.00632 0.98933 0.94873 1.21130 0.99881 0.94434 0.95389 1.21794 0.99972 1.00076 0.98288 1.21946 0.98363 0.97052 0.98667 1.21645 1.00577 0.93858 0.85316 0.90792 0.93081 0.94170 0.92499 0.93570 0.96504 0.91337 0.86058 0.90968 0.89162 0.89061 0.92697 0.88445 0.89783 0.92132 0.91621 0.93480 0.93201 0.89356 0.91748 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.86 8.47 71.98 0.61 -5.25 16 2 C 0.19 8.78 1.65 44.17 0.07 8.85 16 3 H 0.00 0.04 7.20 -2.39 -0.02 0.02 16 4 C -0.51 -30.22 8.51 25.60 0.22 -30.00 16 5 H 0.03 2.29 6.64 -2.91 -0.02 2.27 16 6 C 0.01 0.50 5.45 84.66 0.46 0.96 16 7 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 8 Si 0.96 44.29 24.37 68.60 1.67 45.96 16 9 H -0.26 -11.43 6.87 99.48 0.68 -10.74 16 10 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 11 H -0.24 -10.12 6.53 99.48 0.65 -9.47 16 12 N -0.53 -23.39 4.36 -906.02 -3.95 -27.34 16 13 C 0.05 2.09 8.88 127.69 1.13 3.22 16 14 C 0.03 1.06 3.61 85.56 0.31 1.37 16 15 C 0.51 16.84 7.39 87.66 0.65 17.49 16 16 O -0.57 -23.89 13.74 -3.02 -0.04 -23.93 16 17 N -0.61 -14.25 2.97 -817.98 -2.43 -16.67 16 18 C 0.10 1.47 6.37 86.51 0.55 2.03 16 19 C -0.13 -1.54 5.38 30.82 0.17 -1.37 16 20 C -0.09 -1.02 2.68 -10.77 -0.03 -1.05 16 21 C -0.14 -1.40 9.19 71.98 0.66 -0.74 16 22 C -0.12 -1.87 5.36 30.69 0.16 -1.70 16 23 C 0.11 2.22 6.43 86.37 0.56 2.78 16 24 H 0.07 2.31 6.20 -2.38 -0.01 2.29 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.04 1.66 3.27 -2.39 -0.01 1.65 16 27 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 28 H 0.05 2.35 6.23 -2.39 -0.01 2.34 16 29 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 2.98 5.82 -2.38 -0.01 2.97 16 31 H 0.12 3.37 5.62 -2.39 -0.01 3.36 16 32 H 0.07 2.05 7.68 -2.39 -0.02 2.03 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.31 5.93 -2.39 -0.01 1.30 16 35 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.06 1.70 7.00 -2.39 -0.02 1.68 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -75.16 326.90 1.96 -73.20 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.89 Total: 12.63 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 5.52 Total: -3.43 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -6.08 Total: -104.43 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.04 Total: -23.93 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.67 Total: 45.96 kcal Total: -75.16 1.96 -73.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129552830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.464 kcal (2) G-P(sol) polarization free energy of solvation -75.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds