Wall clock time and date at job start Mon Mar 30 2020 01:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46960 * 2 1 4 4 C 1.50700 * 109.47124 * 239.99415 * 2 1 3 5 5 O 1.21277 * 119.99930 * 257.31057 * 4 2 1 6 6 N 1.34781 * 119.99543 * 77.31436 * 4 2 1 7 7 C 1.46925 * 120.63125 * 4.75224 * 6 4 2 8 8 C 1.52759 * 109.00577 * 233.58450 * 7 6 4 9 9 C 1.53044 * 109.38618 * 305.58683 * 8 7 6 10 10 C 1.52995 * 109.45112 * 181.25604 * 9 8 7 11 11 C 1.53044 * 109.53340 * 61.23939 * 9 8 7 12 12 C 1.46928 * 120.62458 * 185.03327 * 6 4 2 13 13 N 1.46911 * 109.46953 * 119.99486 * 2 1 3 14 14 C 1.46896 * 110.99492 * 46.62939 * 13 2 1 15 15 C 1.46894 * 110.99905 * 282.67165 * 13 2 1 16 16 C 1.50705 * 109.47029 * 189.99936 * 15 13 2 17 17 H 1.08000 * 119.99712 * 0.02562 * 16 15 13 18 18 C 1.37872 * 119.99891 * 180.02562 * 16 15 13 19 19 N 1.31517 * 119.99585 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00334 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47389 * 89.99821 * 20 18 16 22 22 H 1.48498 * 109.47434 * 209.99643 * 20 18 16 23 23 H 1.48495 * 109.47253 * 329.99997 * 20 18 16 24 24 H 1.09000 * 109.47022 * 61.47308 * 1 2 3 25 25 H 1.09008 * 109.46768 * 181.47083 * 1 2 3 26 26 H 1.08999 * 109.47419 * 301.46794 * 1 2 3 27 27 H 1.09002 * 109.58502 * 353.41854 * 7 6 4 28 28 H 1.09002 * 109.58399 * 113.84922 * 7 6 4 29 29 H 1.09006 * 109.56312 * 185.55282 * 8 7 6 30 30 H 1.08993 * 109.36090 * 65.50614 * 8 7 6 31 31 H 1.08994 * 109.45773 * 301.22716 * 9 8 7 32 32 H 1.09008 * 109.46693 * 299.94210 * 10 9 8 33 33 H 1.08994 * 109.47104 * 59.93634 * 10 9 8 34 34 H 1.08995 * 109.47216 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.49390 * 178.68343 * 11 9 8 36 36 H 1.09008 * 109.51841 * 58.60495 * 11 9 8 37 37 H 1.09005 * 109.58436 * 246.15223 * 12 6 4 38 38 H 1.08992 * 109.59082 * 6.43965 * 12 6 4 39 39 H 1.08995 * 109.47909 * 53.32587 * 14 13 2 40 40 H 1.09004 * 109.47329 * 293.31920 * 14 13 2 41 41 H 1.09009 * 109.46446 * 173.32649 * 14 13 2 42 42 H 1.08997 * 109.47549 * 310.00535 * 15 13 2 43 43 H 1.09008 * 109.47296 * 70.00195 * 15 13 2 44 44 H 0.97007 * 119.99778 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.4520 -1.8453 -1.1465 6 7 2.0153 -0.0848 -2.4240 7 6 1.6080 1.3232 -2.5253 8 6 0.4951 1.4457 -3.5645 9 6 0.9631 0.8298 -4.8851 10 6 -0.1388 0.9796 -5.9359 11 6 1.2706 -0.6549 -4.6767 12 6 2.3977 -0.7996 -3.6494 13 7 2.0197 -0.6924 1.1996 14 6 1.3072 -1.9609 1.4028 15 6 1.9115 0.1681 2.3852 16 6 2.6406 -0.4717 3.5385 17 1 3.1352 -1.4224 3.4040 18 6 2.6761 0.1565 4.7653 19 7 3.3128 -0.4017 5.7716 20 14 1.8201 1.8003 4.9981 21 1 0.4190 1.5715 5.4340 22 1 2.5372 2.5900 6.0312 23 1 1.8233 2.5463 3.7141 24 1 -0.3633 0.4908 -0.9029 25 1 -0.3633 -1.0274 0.0264 26 1 -0.3634 0.5364 0.8765 27 1 1.2426 1.6684 -1.5581 28 1 2.4603 1.9288 -2.8337 29 1 0.2539 2.4974 -3.7189 30 1 -0.3899 0.9174 -3.2101 31 1 1.8624 1.3424 -5.2262 32 1 -1.0381 0.4665 -5.5950 33 1 -0.3579 2.0369 -6.0843 34 1 0.1944 0.5414 -6.8767 35 1 1.5815 -1.0982 -5.6227 36 1 0.3784 -1.1640 -4.3120 37 1 3.3157 -0.3706 -4.0512 38 1 2.5556 -1.8541 -3.4232 39 1 1.3624 -2.5586 0.4930 40 1 0.2632 -1.7571 1.6409 41 1 1.7673 -2.5082 2.2256 42 1 2.3543 1.1406 2.1699 43 1 0.8610 0.2970 2.6460 44 1 3.3375 0.0401 6.6349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133236565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:06 Heat of formation + Delta-G solvation = -32.500185 kcal Electronic energy + Delta-G solvation = -21755.665231 eV Core-core repulsion = 18707.959422 eV Total energy + Delta-G solvation = -3047.705810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.34644 -38.08323 -36.40763 -34.03514 -32.66426 -31.54793 -30.16933 -28.41684 -27.51261 -25.62163 -24.13521 -23.51274 -22.51733 -20.85632 -19.88000 -18.50572 -17.06148 -16.84342 -15.74410 -15.22488 -15.04229 -14.62632 -14.41656 -14.37444 -13.99537 -13.81760 -13.55571 -13.24239 -13.00533 -12.75462 -12.40937 -12.25472 -12.09302 -11.90013 -11.66507 -11.45631 -11.21419 -11.18283 -11.05160 -10.93678 -10.66828 -10.63632 -10.59136 -10.33321 -9.84531 -9.34644 -9.05753 -8.56913 -8.55276 -7.30754 -6.02082 -3.99181 2.94527 3.04160 3.28109 3.35598 3.36461 4.42955 4.43843 4.45696 4.54301 4.74241 4.87647 4.93652 5.07435 5.18723 5.23590 5.28964 5.31365 5.35614 5.39286 5.41898 5.53332 5.58738 5.68458 5.73582 5.75670 5.84386 5.89211 5.89892 5.96935 6.14258 6.22738 6.30330 6.40277 6.61123 6.80953 6.89536 7.06619 7.47797 7.61779 7.93726 8.06225 8.51346 8.69128 9.08944 9.58933 11.11254 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032976 B = 0.004448 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.906544 B = 6293.048296 C = 6744.216929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 H 0.095 0.905 4 C 0.528 3.472 5 O -0.519 6.519 6 N -0.619 5.619 7 C 0.104 3.896 8 C -0.131 4.131 9 C -0.093 4.093 10 C -0.146 4.146 11 C -0.128 4.128 12 C 0.112 3.888 13 N -0.509 5.509 14 C 0.033 3.967 15 C 0.163 3.837 16 C -0.507 4.507 17 H 0.082 0.918 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.268 1.268 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.012 0.988 41 H 0.075 0.925 42 H 0.026 0.974 43 H -0.014 1.014 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 5.448 -22.659 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.052 4.052 3 H 0.113 0.887 4 C 0.316 3.684 5 O -0.393 6.393 6 N -0.355 5.355 7 C -0.019 4.019 8 C -0.169 4.169 9 C -0.111 4.111 10 C -0.204 4.204 11 C -0.167 4.167 12 C -0.010 4.010 13 N -0.233 5.233 14 C -0.115 4.115 15 C 0.037 3.963 16 C -0.545 4.545 17 H 0.100 0.900 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.702 3.298 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.192 1.192 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.031 0.969 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.004 0.996 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.158 4.727 -22.450 24.033 hybrid contribution -1.292 1.268 0.366 1.847 sum -8.450 5.995 -22.084 24.394 Atomic orbital electron populations 1.22418 0.95878 1.03201 1.02343 1.21669 0.93769 0.98539 0.91268 0.88721 1.20800 0.77197 0.86609 0.83771 1.90624 1.45097 1.18737 1.84880 1.48122 1.68501 1.12031 1.06892 1.21689 0.97444 0.82235 1.00505 1.21937 0.98632 1.01329 0.95002 1.21120 0.98843 0.96054 0.95098 1.21824 0.98546 1.01570 0.98424 1.21984 0.99371 0.96281 0.99026 1.21496 0.96428 0.98932 0.84168 1.61877 1.54717 1.04846 1.01811 1.22392 0.94802 0.91990 1.02278 1.20256 0.94808 0.92962 0.88281 1.21034 1.32938 1.08134 0.92389 0.89996 1.24897 0.95260 0.97364 0.95852 1.69900 1.42984 1.39092 1.01963 0.86867 0.79901 0.84806 0.78177 1.20354 1.21146 1.19240 0.92400 0.91476 0.91265 0.89283 0.91465 0.90741 0.91399 0.91033 0.92727 0.92682 0.92714 0.90962 0.91582 0.91944 0.89075 0.91498 0.96938 0.90618 0.95571 0.99622 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.05 37.16 0.30 -2.33 16 2 C 0.06 1.05 1.84 -68.86 -0.13 0.93 16 3 H 0.09 1.54 6.37 -51.93 -0.33 1.21 16 4 C 0.53 9.04 6.84 -10.98 -0.08 8.96 16 5 O -0.52 -10.77 13.78 5.56 0.08 -10.70 16 6 N -0.62 -8.02 2.98 -173.03 -0.52 -8.53 16 7 C 0.10 1.03 5.71 -3.93 -0.02 1.01 16 8 C -0.13 -1.02 5.34 -26.83 -0.14 -1.17 16 9 C -0.09 -0.69 2.68 -90.58 -0.24 -0.93 16 10 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 11 C -0.13 -1.10 5.36 -26.61 -0.14 -1.24 16 12 C 0.11 1.26 6.42 -3.71 -0.02 1.23 16 13 N -0.51 -11.33 4.45 -237.72 -1.06 -12.39 16 14 C 0.03 0.71 7.96 60.06 0.48 1.19 16 15 C 0.16 4.00 3.51 -4.98 -0.02 3.98 16 16 C -0.51 -14.74 9.10 -34.44 -0.31 -15.05 16 17 H 0.08 2.63 7.34 -52.49 -0.39 2.25 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 20 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 24 H 0.06 0.67 6.77 -51.93 -0.35 0.32 16 25 H 0.07 1.03 6.37 -51.92 -0.33 0.70 16 26 H 0.07 1.05 7.28 -51.93 -0.38 0.67 16 27 H 0.09 0.89 4.89 -51.93 -0.25 0.63 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.58 7.94 -51.93 -0.41 0.17 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.19 7.03 -51.93 -0.37 0.82 16 39 H 0.07 1.39 5.93 -51.93 -0.31 1.08 16 40 H 0.01 0.24 6.60 -51.93 -0.34 -0.10 16 41 H 0.08 1.78 6.94 -51.92 -0.36 1.42 16 42 H 0.03 0.64 6.91 -51.93 -0.36 0.28 16 43 H -0.01 -0.33 6.76 -51.92 -0.35 -0.68 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 329.59 15.07 4.97 4.97 Total: -1.00 -33.23 329.59 -8.01 -41.24 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.50 Total: -2.05 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.09 Total: -2.13 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.80 Total: -48.12 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.23 -8.01 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133236565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.739 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds