Wall clock time and date at job start Mon Mar 30 2020 01:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46960 * 2 1 4 4 C 1.50700 * 109.47124 * 239.99415 * 2 1 3 5 5 O 1.21277 * 119.99930 * 257.31057 * 4 2 1 6 6 N 1.34781 * 119.99543 * 77.31436 * 4 2 1 7 7 C 1.46925 * 120.63125 * 4.75224 * 6 4 2 8 8 C 1.52759 * 109.00577 * 233.58450 * 7 6 4 9 9 C 1.53044 * 109.38618 * 305.58683 * 8 7 6 10 10 C 1.52995 * 109.45112 * 181.25604 * 9 8 7 11 11 C 1.53044 * 109.53340 * 61.23939 * 9 8 7 12 12 C 1.46928 * 120.62458 * 185.03327 * 6 4 2 13 13 N 1.46911 * 109.46953 * 119.99486 * 2 1 3 14 14 C 1.46896 * 110.99492 * 46.62939 * 13 2 1 15 15 C 1.46894 * 110.99905 * 282.67165 * 13 2 1 16 16 C 1.50705 * 109.47029 * 189.99936 * 15 13 2 17 17 H 1.08000 * 119.99712 * 0.02562 * 16 15 13 18 18 C 1.37872 * 119.99891 * 180.02562 * 16 15 13 19 19 N 1.31517 * 119.99585 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00334 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47389 * 89.99821 * 20 18 16 22 22 H 1.48498 * 109.47434 * 209.99643 * 20 18 16 23 23 H 1.48495 * 109.47253 * 329.99997 * 20 18 16 24 24 H 1.09000 * 109.47022 * 61.47308 * 1 2 3 25 25 H 1.09008 * 109.46768 * 181.47083 * 1 2 3 26 26 H 1.08999 * 109.47419 * 301.46794 * 1 2 3 27 27 H 1.09002 * 109.58502 * 353.41854 * 7 6 4 28 28 H 1.09002 * 109.58399 * 113.84922 * 7 6 4 29 29 H 1.09006 * 109.56312 * 185.55282 * 8 7 6 30 30 H 1.08993 * 109.36090 * 65.50614 * 8 7 6 31 31 H 1.08994 * 109.45773 * 301.22716 * 9 8 7 32 32 H 1.09008 * 109.46693 * 299.94210 * 10 9 8 33 33 H 1.08994 * 109.47104 * 59.93634 * 10 9 8 34 34 H 1.08995 * 109.47216 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.49390 * 178.68343 * 11 9 8 36 36 H 1.09008 * 109.51841 * 58.60495 * 11 9 8 37 37 H 1.09005 * 109.58436 * 246.15223 * 12 6 4 38 38 H 1.08992 * 109.59082 * 6.43965 * 12 6 4 39 39 H 1.08995 * 109.47909 * 53.32587 * 14 13 2 40 40 H 1.09004 * 109.47329 * 293.31920 * 14 13 2 41 41 H 1.09009 * 109.46446 * 173.32649 * 14 13 2 42 42 H 1.08997 * 109.47549 * 310.00535 * 15 13 2 43 43 H 1.09008 * 109.47296 * 70.00195 * 15 13 2 44 44 H 0.97007 * 119.99778 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.4520 -1.8453 -1.1465 6 7 2.0153 -0.0848 -2.4240 7 6 1.6080 1.3232 -2.5253 8 6 0.4951 1.4457 -3.5645 9 6 0.9631 0.8298 -4.8851 10 6 -0.1388 0.9796 -5.9359 11 6 1.2706 -0.6549 -4.6767 12 6 2.3977 -0.7996 -3.6494 13 7 2.0197 -0.6924 1.1996 14 6 1.3072 -1.9609 1.4028 15 6 1.9115 0.1681 2.3852 16 6 2.6406 -0.4717 3.5385 17 1 3.1352 -1.4224 3.4040 18 6 2.6761 0.1565 4.7653 19 7 3.3128 -0.4017 5.7716 20 14 1.8201 1.8003 4.9981 21 1 0.4190 1.5715 5.4340 22 1 2.5372 2.5900 6.0312 23 1 1.8233 2.5463 3.7141 24 1 -0.3633 0.4908 -0.9029 25 1 -0.3633 -1.0274 0.0264 26 1 -0.3634 0.5364 0.8765 27 1 1.2426 1.6684 -1.5581 28 1 2.4603 1.9288 -2.8337 29 1 0.2539 2.4974 -3.7189 30 1 -0.3899 0.9174 -3.2101 31 1 1.8624 1.3424 -5.2262 32 1 -1.0381 0.4665 -5.5950 33 1 -0.3579 2.0369 -6.0843 34 1 0.1944 0.5414 -6.8767 35 1 1.5815 -1.0982 -5.6227 36 1 0.3784 -1.1640 -4.3120 37 1 3.3157 -0.3706 -4.0512 38 1 2.5556 -1.8541 -3.4232 39 1 1.3624 -2.5586 0.4930 40 1 0.2632 -1.7571 1.6409 41 1 1.7673 -2.5082 2.2256 42 1 2.3543 1.1406 2.1699 43 1 0.8610 0.2970 2.6460 44 1 3.3375 0.0401 6.6349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133236565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:06 Heat of formation + Delta-G solvation = -55.668632 kcal Electronic energy + Delta-G solvation = -21756.669891 eV Core-core repulsion = 18707.959422 eV Total energy + Delta-G solvation = -3048.710469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51804 -39.17738 -37.89210 -35.02757 -34.71026 -32.62627 -31.46450 -29.58713 -29.03163 -27.18591 -25.46226 -24.25851 -23.81206 -22.11322 -21.04692 -19.65686 -18.97300 -18.28087 -17.00539 -16.42425 -16.32341 -16.16659 -15.56743 -15.41481 -15.20555 -15.04992 -14.73272 -14.42473 -14.31004 -14.20016 -13.60793 -13.56280 -13.13972 -12.98835 -12.73204 -12.72296 -12.62781 -12.49839 -12.42585 -12.15640 -12.10719 -11.79592 -11.74697 -11.52210 -11.31580 -11.27363 -10.77995 -10.50670 -9.60690 -8.99342 -8.26598 -6.31399 1.36236 1.39544 1.50298 1.64976 1.96680 2.36651 3.05861 3.24632 3.53979 3.81101 3.89559 3.94857 4.01732 4.08113 4.17189 4.36094 4.45536 4.49828 4.56323 4.59311 4.63759 4.71246 4.79014 4.81369 4.84243 4.89567 4.94843 4.98155 5.03944 5.11231 5.12569 5.17489 5.22581 5.26212 5.40714 5.52426 5.56174 5.65600 5.96251 6.28230 6.40024 6.66625 6.75103 7.25548 7.32103 8.90797 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032976 B = 0.004448 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.906544 B = 6293.048296 C = 6744.216929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.058 3.942 3 H 0.112 0.888 4 C 0.523 3.477 5 O -0.570 6.570 6 N -0.610 5.610 7 C 0.095 3.905 8 C -0.126 4.126 9 C -0.090 4.090 10 C -0.143 4.143 11 C -0.120 4.120 12 C 0.108 3.892 13 N -0.537 5.537 14 C 0.047 3.953 15 C 0.176 3.824 16 C -0.521 4.521 17 H 0.027 0.973 18 C 0.004 3.996 19 N -0.952 5.952 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.239 1.239 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.038 0.962 42 H 0.036 0.964 43 H -0.001 1.001 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.930 8.826 -25.006 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.054 4.054 3 H 0.130 0.870 4 C 0.311 3.689 5 O -0.448 6.448 6 N -0.344 5.344 7 C -0.026 4.026 8 C -0.164 4.164 9 C -0.109 4.109 10 C -0.200 4.200 11 C -0.159 4.159 12 C -0.014 4.014 13 N -0.261 5.261 14 C -0.101 4.101 15 C 0.049 3.951 16 C -0.560 4.560 17 H 0.046 0.954 18 C -0.193 4.193 19 N -0.593 5.593 20 Si 0.776 3.224 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.162 1.162 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.016 0.984 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.151 8.135 -24.866 27.717 hybrid contribution -0.589 0.136 1.008 1.175 sum -9.740 8.271 -23.858 27.064 Atomic orbital electron populations 1.22336 0.93395 1.03050 1.04122 1.21778 0.95782 0.98631 0.89185 0.87048 1.20797 0.77046 0.86090 0.84920 1.90606 1.47655 1.20817 1.85752 1.48177 1.66872 1.13304 1.06052 1.22002 0.98939 0.80118 1.01581 1.21926 0.97370 1.02775 0.94287 1.21124 0.99658 0.94751 0.95351 1.21785 0.97844 1.02247 0.98145 1.21933 0.97680 0.97641 0.98596 1.21639 0.98268 0.97440 0.84079 1.61663 1.56507 1.05128 1.02769 1.22185 0.95146 0.91825 1.00942 1.19994 0.94530 0.92959 0.87580 1.21273 1.33222 1.06639 0.94827 0.95426 1.25958 0.95967 1.02303 0.95077 1.70083 1.44918 1.41508 1.02784 0.85618 0.78660 0.78756 0.79321 1.19029 1.20827 1.16242 0.88929 0.92516 0.91178 0.89048 0.89919 0.88398 0.91919 0.90203 0.93143 0.91684 0.92241 0.89399 0.92687 0.90605 0.91695 0.91189 0.95311 0.94299 0.94575 0.98389 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.54 8.05 71.98 0.58 -3.96 16 2 C 0.06 1.94 1.84 44.17 0.08 2.02 16 3 H 0.11 3.31 6.37 -2.39 -0.02 3.29 16 4 C 0.52 17.63 6.84 87.66 0.60 18.23 16 5 O -0.57 -24.35 13.78 -3.02 -0.04 -24.39 16 6 N -0.61 -14.75 2.98 -819.74 -2.44 -17.19 16 7 C 0.10 1.54 5.71 86.22 0.49 2.04 16 8 C -0.13 -1.46 5.34 30.53 0.16 -1.30 16 9 C -0.09 -1.01 2.68 -10.77 -0.03 -1.04 16 10 C -0.14 -1.31 9.19 71.98 0.66 -0.64 16 11 C -0.12 -1.79 5.36 30.67 0.16 -1.63 16 12 C 0.11 2.29 6.42 86.36 0.55 2.84 16 13 N -0.54 -24.06 4.45 -906.01 -4.03 -28.09 16 14 C 0.05 2.08 7.96 127.69 1.02 3.10 16 15 C 0.18 8.51 3.51 85.56 0.30 8.81 16 16 C -0.52 -31.34 9.10 25.60 0.23 -31.11 16 17 H 0.03 1.90 7.34 -2.91 -0.02 1.88 16 18 C 0.00 0.22 5.47 84.65 0.46 0.68 16 19 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 20 Si 0.95 43.51 27.47 68.60 1.88 45.40 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 24 H 0.09 1.81 6.77 -2.39 -0.02 1.79 16 25 H 0.06 1.64 6.37 -2.38 -0.02 1.62 16 26 H 0.07 1.88 7.28 -2.39 -0.02 1.86 16 27 H 0.09 1.46 4.89 -2.39 -0.01 1.44 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 0.83 7.94 -2.39 -0.02 0.81 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.06 1.73 7.03 -2.39 -0.02 1.72 16 39 H 0.07 3.03 5.93 -2.39 -0.01 3.02 16 40 H 0.03 1.15 6.60 -2.38 -0.02 1.13 16 41 H 0.04 1.95 6.94 -2.38 -0.02 1.93 16 42 H 0.04 1.68 6.91 -2.39 -0.02 1.66 16 43 H 0.00 -0.07 6.76 -2.38 -0.02 -0.08 16 44 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 Total: -1.00 -76.19 329.59 1.85 -74.33 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.91 Total: 12.69 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.28 Total: -1.97 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -6.18 Total: -106.07 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.04 Total: -24.39 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Total: -76.19 1.85 -74.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133236565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.665 kcal (2) G-P(sol) polarization free energy of solvation -76.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds