Wall clock time and date at job start Mon Mar 30 2020 01:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47628 * 2 1 4 4 C 1.50700 * 109.46887 * 119.99945 * 2 1 3 5 5 O 1.21289 * 119.99978 * 94.84144 * 4 2 1 6 6 N 1.34777 * 120.00354 * 274.84276 * 4 2 1 7 7 C 1.46916 * 120.63611 * 175.37815 * 6 4 2 8 8 C 1.53192 * 108.89759 * 233.51712 * 7 6 4 9 9 C 1.53075 * 109.29267 * 305.57749 * 8 7 6 10 10 C 1.52995 * 109.44149 * 181.23306 * 9 8 7 11 11 C 1.53043 * 109.65878 * 61.14986 * 9 8 7 12 12 C 1.46928 * 120.62645 * 355.35779 * 6 4 2 13 13 N 1.46901 * 109.46952 * 239.99809 * 2 1 3 14 14 C 1.46902 * 110.99929 * 178.82106 * 13 2 1 15 15 C 1.46898 * 111.00194 * 54.86374 * 13 2 1 16 16 C 1.50698 * 109.46896 * 189.99858 * 15 13 2 17 17 H 1.07995 * 120.00472 * 0.02562 * 16 15 13 18 18 C 1.37878 * 119.99447 * 179.97438 * 16 15 13 19 19 N 1.31518 * 120.00596 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99791 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47120 * 90.00541 * 20 18 16 22 22 H 1.48507 * 109.47173 * 209.99970 * 20 18 16 23 23 H 1.48500 * 109.47239 * 329.99919 * 20 18 16 24 24 H 1.08995 * 109.47473 * 172.76569 * 1 2 3 25 25 H 1.09003 * 109.47014 * 292.77223 * 1 2 3 26 26 H 1.09001 * 109.46473 * 52.76776 * 1 2 3 27 27 H 1.09007 * 109.58486 * 353.37630 * 7 6 4 28 28 H 1.09005 * 109.59188 * 113.65706 * 7 6 4 29 29 H 1.09002 * 109.49555 * 65.38340 * 8 7 6 30 30 H 1.08996 * 109.50120 * 185.48148 * 8 7 6 31 31 H 1.09000 * 109.34913 * 301.12603 * 9 8 7 32 32 H 1.09003 * 109.47400 * 299.79889 * 10 9 8 33 33 H 1.09003 * 109.47053 * 59.79281 * 10 9 8 34 34 H 1.09003 * 109.47454 * 179.79628 * 10 9 8 35 35 H 1.08992 * 109.49873 * 178.74555 * 11 9 8 36 36 H 1.09003 * 109.51912 * 58.66794 * 11 9 8 37 37 H 1.08997 * 109.58744 * 246.19954 * 12 6 4 38 38 H 1.09002 * 109.58574 * 6.48370 * 12 6 4 39 39 H 1.09000 * 109.47589 * 65.52881 * 14 13 2 40 40 H 1.08996 * 109.47053 * 185.52855 * 14 13 2 41 41 H 1.09004 * 109.46800 * 305.53084 * 14 13 2 42 42 H 1.09000 * 109.47113 * 309.99964 * 15 13 2 43 43 H 1.08999 * 109.46583 * 69.99737 * 15 13 2 44 44 H 0.96996 * 120.00508 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3180 -1.8879 1.1767 6 7 2.1640 -0.0373 2.3907 7 6 2.5553 -0.7370 3.6219 8 6 1.5274 -0.4297 4.7153 9 6 1.3893 1.0872 4.8677 10 6 0.3861 1.3980 5.9802 11 6 0.8960 1.6940 3.5522 12 6 1.9194 1.4103 2.4482 13 7 2.0197 -0.6925 -1.1994 14 6 3.4879 -0.6878 -1.2476 15 6 1.4510 -0.1011 -2.4179 16 6 1.7739 -0.9783 -3.6000 17 1 2.3440 -1.8847 -3.4600 18 6 1.3404 -0.6241 -4.8600 19 7 0.6456 0.4795 -5.0304 20 14 1.7399 -1.7118 -6.3252 21 1 0.6598 -2.7146 -6.5064 22 1 1.8489 -0.8754 -7.5475 23 1 3.0287 -2.4099 -6.0866 24 1 -0.3634 -1.0194 -0.1294 25 1 -0.3633 0.3978 0.9476 26 1 -0.3632 0.6218 -0.8183 27 1 2.5836 -1.8112 3.4384 28 1 3.5402 -0.3946 3.9396 29 1 0.5628 -0.8548 4.4377 30 1 1.8588 -0.8637 5.6586 31 1 2.3590 1.5142 5.1235 32 1 -0.5839 0.9714 5.7244 33 1 0.7372 0.9658 6.9173 34 1 0.2900 2.4780 6.0917 35 1 0.7774 2.7710 3.6703 36 1 -0.0622 1.2498 3.2829 37 1 2.8513 1.9297 2.6715 38 1 1.5305 1.7535 1.4895 39 1 3.8806 -1.2777 -0.4194 40 1 3.8218 -1.1190 -2.1913 41 1 3.8507 0.3370 -1.1678 42 1 0.3694 -0.0187 -2.3112 43 1 1.8772 0.8900 -2.5736 44 1 0.3409 0.7289 -5.9169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133236719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:09 Heat of formation + Delta-G solvation = -37.235962 kcal Electronic energy + Delta-G solvation = -21670.075208 eV Core-core repulsion = 18622.164039 eV Total energy + Delta-G solvation = -3047.911169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24541 -37.92263 -36.16734 -33.95939 -32.64882 -31.48799 -30.32493 -28.36544 -27.36982 -24.42518 -24.40214 -23.48529 -22.69647 -20.93286 -19.94828 -18.41125 -17.17260 -16.39266 -15.59961 -15.26161 -14.95517 -14.59327 -14.47887 -14.29475 -13.92772 -13.70974 -13.52237 -13.10857 -12.73858 -12.52007 -12.27271 -12.03362 -11.96139 -11.74821 -11.64575 -11.38025 -11.12987 -11.09745 -10.90702 -10.82000 -10.66248 -10.58062 -10.52219 -10.38670 -9.90458 -9.24770 -9.05359 -8.52719 -8.38642 -7.18273 -6.00555 -4.00515 2.98968 3.09523 3.35508 3.41001 3.45918 4.44756 4.49616 4.51293 4.59517 4.83596 4.93039 4.99206 5.12074 5.23905 5.27646 5.35412 5.39977 5.45152 5.53154 5.56126 5.62656 5.70748 5.72348 5.79349 5.86894 5.92438 5.94721 6.01679 6.19485 6.21007 6.32978 6.38040 6.63845 6.65908 6.84775 7.27256 7.32658 7.54713 7.83830 8.08366 8.21151 8.51858 8.61744 9.07334 9.63168 11.10458 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040865 B = 0.004042 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.013745 B = 6925.574223 C = 7272.175144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.068 3.932 3 H 0.048 0.952 4 C 0.523 3.477 5 O -0.518 6.518 6 N -0.621 5.621 7 C 0.112 3.888 8 C -0.128 4.128 9 C -0.092 4.092 10 C -0.146 4.146 11 C -0.130 4.130 12 C 0.104 3.896 13 N -0.518 5.518 14 C 0.034 3.966 15 C 0.189 3.811 16 C -0.504 4.504 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.005 0.995 42 H 0.039 0.961 43 H -0.010 1.010 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 4.935 20.484 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.045 4.045 3 H 0.065 0.935 4 C 0.311 3.689 5 O -0.392 6.392 6 N -0.357 5.357 7 C -0.011 4.011 8 C -0.167 4.167 9 C -0.111 4.111 10 C -0.204 4.204 11 C -0.168 4.168 12 C -0.019 4.019 13 N -0.244 5.244 14 C -0.114 4.114 15 C 0.065 3.935 16 C -0.543 4.543 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.198 1.198 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.024 0.976 42 H 0.057 0.943 43 H 0.008 0.992 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.703 3.887 20.307 20.688 hybrid contribution 0.433 0.512 -0.836 1.071 sum 1.135 4.399 19.471 19.994 Atomic orbital electron populations 1.21791 0.92392 1.03937 1.01409 1.21587 0.97164 0.95182 0.90543 0.93488 1.20909 0.76609 0.87397 0.83953 1.90653 1.48257 1.16058 1.84207 1.48184 1.70205 1.08555 1.08760 1.21485 0.96793 0.98987 0.83814 1.21987 1.00203 0.95891 0.98589 1.21123 0.99358 0.95648 0.94970 1.21825 0.99212 1.01329 0.97995 1.21994 0.99283 1.01036 0.94518 1.21796 0.98860 0.80907 1.00377 1.61966 1.07119 1.53889 1.01381 1.22290 0.88430 0.97954 1.02734 1.19869 0.95648 0.93094 0.84907 1.21172 1.34075 1.08010 0.91033 0.91746 1.24967 0.95327 0.95349 0.98951 1.69951 1.37634 1.23603 1.22853 0.86487 0.78873 0.80271 0.81727 1.20616 1.21380 1.19844 0.91047 0.93068 0.90545 0.89130 0.92094 0.91485 0.90977 0.91162 0.92652 0.92759 0.92685 0.90760 0.91234 0.91678 0.89096 0.92926 0.90233 0.97643 0.94258 0.99224 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.42 37.16 0.31 -2.05 16 2 C 0.07 1.26 1.64 -68.86 -0.11 1.15 16 3 H 0.05 0.82 6.26 -51.93 -0.32 0.50 16 4 C 0.52 9.37 6.03 -10.99 -0.07 9.31 16 5 O -0.52 -11.19 14.86 5.55 0.08 -11.10 16 6 N -0.62 -8.45 2.97 -172.77 -0.51 -8.97 16 7 C 0.11 1.30 6.41 -3.72 -0.02 1.28 16 8 C -0.13 -1.17 5.37 -26.59 -0.14 -1.31 16 9 C -0.09 -0.73 2.68 -90.56 -0.24 -0.98 16 10 C -0.15 -1.00 9.19 37.16 0.34 -0.65 16 11 C -0.13 -1.12 5.37 -26.61 -0.14 -1.26 16 12 C 0.10 1.10 6.27 -3.71 -0.02 1.08 16 13 N -0.52 -11.96 4.32 -237.73 -1.03 -12.99 16 14 C 0.03 0.75 9.03 60.07 0.54 1.29 16 15 C 0.19 4.97 4.45 -4.98 -0.02 4.95 16 16 C -0.50 -14.46 8.38 -34.44 -0.29 -14.75 16 17 H 0.06 1.87 7.17 -52.49 -0.38 1.49 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 20 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 25 H 0.05 0.71 8.11 -51.93 -0.42 0.28 16 26 H 0.08 1.37 6.56 -51.93 -0.34 1.03 16 27 H 0.09 1.23 7.03 -51.93 -0.37 0.86 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.01 5.35 -51.93 -0.28 0.74 16 39 H 0.05 1.11 6.54 -51.93 -0.34 0.77 16 40 H 0.08 1.82 6.65 -51.93 -0.35 1.48 16 41 H 0.01 0.10 8.12 -51.93 -0.42 -0.32 16 42 H 0.04 1.06 5.83 -51.93 -0.30 0.76 16 43 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -32.40 338.61 -8.33 -40.73 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -7.72 Total: -3.33 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 0.03 Total: -0.48 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.81 Total: -47.90 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.40 -8.33 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133236719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.490 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds