Wall clock time and date at job start Mon Mar 30 2020 01:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47628 * 2 1 4 4 C 1.50700 * 109.46887 * 119.99945 * 2 1 3 5 5 O 1.21289 * 119.99978 * 94.84144 * 4 2 1 6 6 N 1.34777 * 120.00354 * 274.84276 * 4 2 1 7 7 C 1.46916 * 120.63611 * 175.37815 * 6 4 2 8 8 C 1.53192 * 108.89759 * 233.51712 * 7 6 4 9 9 C 1.53075 * 109.29267 * 305.57749 * 8 7 6 10 10 C 1.52995 * 109.44149 * 181.23306 * 9 8 7 11 11 C 1.53043 * 109.65878 * 61.14986 * 9 8 7 12 12 C 1.46928 * 120.62645 * 355.35779 * 6 4 2 13 13 N 1.46901 * 109.46952 * 239.99809 * 2 1 3 14 14 C 1.46902 * 110.99929 * 178.82106 * 13 2 1 15 15 C 1.46898 * 111.00194 * 54.86374 * 13 2 1 16 16 C 1.50698 * 109.46896 * 189.99858 * 15 13 2 17 17 H 1.07995 * 120.00472 * 0.02562 * 16 15 13 18 18 C 1.37878 * 119.99447 * 179.97438 * 16 15 13 19 19 N 1.31518 * 120.00596 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99791 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47120 * 90.00541 * 20 18 16 22 22 H 1.48507 * 109.47173 * 209.99970 * 20 18 16 23 23 H 1.48500 * 109.47239 * 329.99919 * 20 18 16 24 24 H 1.08995 * 109.47473 * 172.76569 * 1 2 3 25 25 H 1.09003 * 109.47014 * 292.77223 * 1 2 3 26 26 H 1.09001 * 109.46473 * 52.76776 * 1 2 3 27 27 H 1.09007 * 109.58486 * 353.37630 * 7 6 4 28 28 H 1.09005 * 109.59188 * 113.65706 * 7 6 4 29 29 H 1.09002 * 109.49555 * 65.38340 * 8 7 6 30 30 H 1.08996 * 109.50120 * 185.48148 * 8 7 6 31 31 H 1.09000 * 109.34913 * 301.12603 * 9 8 7 32 32 H 1.09003 * 109.47400 * 299.79889 * 10 9 8 33 33 H 1.09003 * 109.47053 * 59.79281 * 10 9 8 34 34 H 1.09003 * 109.47454 * 179.79628 * 10 9 8 35 35 H 1.08992 * 109.49873 * 178.74555 * 11 9 8 36 36 H 1.09003 * 109.51912 * 58.66794 * 11 9 8 37 37 H 1.08997 * 109.58744 * 246.19954 * 12 6 4 38 38 H 1.09002 * 109.58574 * 6.48370 * 12 6 4 39 39 H 1.09000 * 109.47589 * 65.52881 * 14 13 2 40 40 H 1.08996 * 109.47053 * 185.52855 * 14 13 2 41 41 H 1.09004 * 109.46800 * 305.53084 * 14 13 2 42 42 H 1.09000 * 109.47113 * 309.99964 * 15 13 2 43 43 H 1.08999 * 109.46583 * 69.99737 * 15 13 2 44 44 H 0.96996 * 120.00508 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3180 -1.8879 1.1767 6 7 2.1640 -0.0373 2.3907 7 6 2.5553 -0.7370 3.6219 8 6 1.5274 -0.4297 4.7153 9 6 1.3893 1.0872 4.8677 10 6 0.3861 1.3980 5.9802 11 6 0.8960 1.6940 3.5522 12 6 1.9194 1.4103 2.4482 13 7 2.0197 -0.6925 -1.1994 14 6 3.4879 -0.6878 -1.2476 15 6 1.4510 -0.1011 -2.4179 16 6 1.7739 -0.9783 -3.6000 17 1 2.3440 -1.8847 -3.4600 18 6 1.3404 -0.6241 -4.8600 19 7 0.6456 0.4795 -5.0304 20 14 1.7399 -1.7118 -6.3252 21 1 0.6598 -2.7146 -6.5064 22 1 1.8489 -0.8754 -7.5475 23 1 3.0287 -2.4099 -6.0866 24 1 -0.3634 -1.0194 -0.1294 25 1 -0.3633 0.3978 0.9476 26 1 -0.3632 0.6218 -0.8183 27 1 2.5836 -1.8112 3.4384 28 1 3.5402 -0.3946 3.9396 29 1 0.5628 -0.8548 4.4377 30 1 1.8588 -0.8637 5.6586 31 1 2.3590 1.5142 5.1235 32 1 -0.5839 0.9714 5.7244 33 1 0.7372 0.9658 6.9173 34 1 0.2900 2.4780 6.0917 35 1 0.7774 2.7710 3.6703 36 1 -0.0622 1.2498 3.2829 37 1 2.8513 1.9297 2.6715 38 1 1.5305 1.7535 1.4895 39 1 3.8806 -1.2777 -0.4194 40 1 3.8218 -1.1190 -2.1913 41 1 3.8507 0.3370 -1.1678 42 1 0.3694 -0.0187 -2.3112 43 1 1.8772 0.8900 -2.5736 44 1 0.3409 0.7289 -5.9169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133236719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:08 Heat of formation + Delta-G solvation = -58.214425 kcal Electronic energy + Delta-G solvation = -21670.984902 eV Core-core repulsion = 18622.164039 eV Total energy + Delta-G solvation = -3048.820863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49347 -39.06813 -37.79953 -35.02512 -34.67858 -32.66520 -31.60247 -29.51124 -29.09513 -26.31697 -25.72256 -24.31299 -23.99702 -22.29828 -21.06883 -19.64210 -18.73422 -18.22041 -17.01187 -16.73058 -16.37518 -16.12933 -15.42977 -15.30425 -15.28037 -14.99145 -14.67241 -14.40979 -14.18730 -13.90271 -13.61078 -13.46673 -13.26740 -12.89899 -12.82858 -12.72930 -12.65018 -12.46334 -12.42154 -12.29304 -12.17215 -11.89781 -11.81710 -11.34916 -11.32921 -11.28223 -10.65729 -10.49709 -9.63794 -9.00112 -8.20041 -6.28377 1.40924 1.42401 1.53287 1.59678 1.93962 2.41569 3.12078 3.23964 3.50259 3.78447 3.87908 3.93087 4.06071 4.12390 4.15180 4.33964 4.39096 4.46431 4.54469 4.58373 4.69454 4.72887 4.79156 4.85653 4.87725 4.93217 4.97817 5.03354 5.11392 5.12442 5.17685 5.18928 5.25000 5.28743 5.40103 5.55316 5.61320 5.66281 6.03365 6.27713 6.32388 6.60639 6.85404 7.22656 7.40160 8.90672 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040865 B = 0.004042 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.013745 B = 6925.574223 C = 7272.175144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.063 3.937 3 H 0.066 0.934 4 C 0.524 3.476 5 O -0.565 6.565 6 N -0.611 5.611 7 C 0.108 3.892 8 C -0.121 4.121 9 C -0.089 4.089 10 C -0.143 4.143 11 C -0.126 4.126 12 C 0.096 3.904 13 N -0.537 5.537 14 C 0.044 3.956 15 C 0.207 3.793 16 C -0.527 4.527 17 H 0.054 0.946 18 C 0.007 3.993 19 N -0.929 5.929 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.269 1.269 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.026 0.974 43 H -0.031 1.031 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 5.953 22.011 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.048 4.048 3 H 0.083 0.917 4 C 0.312 3.688 5 O -0.443 6.443 6 N -0.345 5.345 7 C -0.014 4.014 8 C -0.160 4.160 9 C -0.108 4.108 10 C -0.200 4.200 11 C -0.164 4.164 12 C -0.026 4.026 13 N -0.263 5.263 14 C -0.105 4.105 15 C 0.081 3.919 16 C -0.565 4.565 17 H 0.072 0.928 18 C -0.191 4.191 19 N -0.569 5.569 20 Si 0.790 3.210 21 H -0.200 1.200 22 H -0.203 1.203 23 H -0.194 1.194 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.044 0.956 43 H -0.014 1.014 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.942 4.946 21.887 22.459 hybrid contribution 0.365 0.253 -1.205 1.285 sum 1.307 5.199 20.682 21.366 Atomic orbital electron populations 1.21711 0.91476 1.02533 1.02928 1.21697 0.97978 0.95764 0.89391 0.91699 1.20662 0.76584 0.86768 0.84800 1.90632 1.50756 1.17860 1.85058 1.48223 1.68335 1.09871 1.08043 1.21668 0.98689 0.97551 0.83522 1.21952 0.98576 0.97187 0.98244 1.21124 1.00326 0.94353 0.94976 1.21788 0.98488 1.02012 0.97746 1.21989 0.97968 1.02480 0.93943 1.22078 1.00621 0.78811 1.01119 1.61825 1.07825 1.54840 1.01800 1.22159 0.87837 0.98621 1.01844 1.19513 0.94730 0.91685 0.85935 1.21441 1.34446 1.08151 0.92503 0.92756 1.25795 0.94938 0.96668 1.01697 1.70048 1.38169 1.24926 1.23785 0.85445 0.78784 0.78532 0.78218 1.19985 1.20332 1.19394 0.93234 0.89436 0.91649 0.91547 0.90215 0.92867 0.89050 0.90002 0.93245 0.92020 0.91716 0.88502 0.92148 0.89688 0.89704 0.92411 0.92125 0.96308 0.95574 1.01382 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 8.42 71.98 0.61 -3.84 16 2 C 0.06 2.38 1.64 44.17 0.07 2.46 16 3 H 0.07 2.22 6.26 -2.39 -0.01 2.20 16 4 C 0.52 18.70 6.03 87.66 0.53 19.23 16 5 O -0.57 -24.93 14.86 -3.06 -0.05 -24.97 16 6 N -0.61 -15.79 2.97 -818.91 -2.44 -18.22 16 7 C 0.11 2.35 6.41 86.36 0.55 2.90 16 8 C -0.12 -1.94 5.37 30.68 0.16 -1.77 16 9 C -0.09 -1.12 2.68 -10.76 -0.03 -1.15 16 10 C -0.14 -1.48 9.19 71.98 0.66 -0.82 16 11 C -0.13 -1.77 5.37 30.67 0.16 -1.60 16 12 C 0.10 1.78 6.27 86.36 0.54 2.33 16 13 N -0.54 -25.41 4.32 -906.04 -3.92 -29.32 16 14 C 0.04 1.93 9.03 127.69 1.15 3.08 16 15 C 0.21 11.18 4.45 85.56 0.38 11.56 16 16 C -0.53 -30.93 8.38 25.60 0.21 -30.71 16 17 H 0.05 3.23 7.17 -2.91 -0.02 3.21 16 18 C 0.01 0.43 5.46 84.65 0.46 0.89 16 19 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 20 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.09 2.32 8.11 -2.39 -0.02 2.30 16 26 H 0.06 2.39 6.56 -2.39 -0.02 2.37 16 27 H 0.07 1.80 7.03 -2.38 -0.02 1.78 16 28 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.70 5.35 -2.39 -0.01 1.69 16 39 H 0.06 2.47 6.54 -2.39 -0.02 2.45 16 40 H 0.06 2.86 6.65 -2.39 -0.02 2.84 16 41 H 0.02 0.75 8.12 -2.39 -0.02 0.74 16 42 H 0.03 1.47 5.83 -2.39 -0.01 1.46 16 43 H -0.03 -1.80 8.12 -2.39 -0.02 -1.82 16 44 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -71.04 338.61 2.34 -68.70 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.95 Total: 9.14 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 5.47 Total: 2.55 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -6.07 Total: -102.79 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -71.04 2.34 -68.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133236719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.485 kcal (2) G-P(sol) polarization free energy of solvation -71.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds