Wall clock time and date at job start Mon Mar 30 2020 01:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 C 1.50695 * 109.47374 * 120.00211 * 2 1 3 5 5 H 1.08003 * 119.99772 * 119.99925 * 4 2 1 6 6 C 1.37879 * 120.00108 * 299.99803 * 4 2 1 7 7 N 1.31510 * 120.00030 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 119.99753 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47378 * 89.99798 * 8 6 4 10 10 H 1.48501 * 109.47083 * 209.99677 * 8 6 4 11 11 H 1.48504 * 109.47464 * 329.99663 * 8 6 4 12 12 N 1.46505 * 109.47068 * 240.00372 * 2 1 3 13 13 C 1.46500 * 119.99653 * 299.99872 * 12 2 1 14 14 C 1.34775 * 120.00170 * 119.99658 * 12 2 1 15 15 O 1.21279 * 119.99907 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99921 * 180.02562 * 14 12 2 17 17 N 1.46902 * 109.46839 * 173.73332 * 16 14 12 18 18 C 1.46846 * 110.99898 * 169.40044 * 17 16 14 19 19 C 1.53039 * 109.52545 * 185.84075 * 18 17 16 20 20 C 1.53118 * 109.27546 * 300.81837 * 19 18 17 21 21 C 1.52999 * 109.57510 * 177.58848 * 20 19 18 22 22 C 1.53120 * 109.16034 * 57.65421 * 20 19 18 23 23 C 1.46847 * 111.00084 * 293.60701 * 17 16 14 24 24 H 1.08999 * 109.47146 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47096 * 299.99941 * 1 2 3 26 26 H 1.08995 * 109.47519 * 59.99605 * 1 2 3 27 27 H 0.96999 * 120.00587 * 180.02562 * 7 6 4 28 28 H 1.09006 * 109.47122 * 90.00281 * 13 12 2 29 29 H 1.08998 * 109.47340 * 330.00162 * 13 12 2 30 30 H 1.09003 * 109.47045 * 209.99777 * 13 12 2 31 31 H 1.08994 * 109.47493 * 293.73099 * 16 14 12 32 32 H 1.09001 * 109.47143 * 53.73851 * 16 14 12 33 33 H 1.09010 * 109.46126 * 305.85135 * 18 17 16 34 34 H 1.08995 * 109.46603 * 65.81964 * 18 17 16 35 35 H 1.08996 * 109.50917 * 180.87516 * 19 18 17 36 36 H 1.08997 * 109.50223 * 60.75728 * 19 18 17 37 37 H 1.09004 * 109.52358 * 297.74675 * 20 19 18 38 38 H 1.09002 * 109.47209 * 300.28528 * 21 20 19 39 39 H 1.09009 * 109.47176 * 60.28312 * 21 20 19 40 40 H 1.08994 * 109.47537 * 180.28196 * 21 20 19 41 41 H 1.09006 * 109.50048 * 182.40283 * 22 20 19 42 42 H 1.08995 * 109.53493 * 62.30683 * 22 20 19 43 43 H 1.09000 * 109.46024 * 294.17718 * 23 17 16 44 44 H 1.08997 * 109.46110 * 54.15594 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5564 8 14 0.6248 1.2789 2.6541 9 1 -0.8028 0.8725 2.6998 10 1 0.9760 1.9949 3.9069 11 1 0.8470 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4281 14 6 2.7930 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8912 16 6 3.2949 -0.7457 -3.3142 17 7 3.9837 0.2144 -4.1869 18 6 4.7006 -0.4760 -5.2665 19 6 5.5216 0.5384 -6.0659 20 6 4.5847 1.6005 -6.6479 21 6 5.4048 2.6518 -7.3983 22 6 3.8147 2.2711 -5.5068 23 6 3.0432 1.2064 -4.7237 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.9028 -0.5286 4.4375 28 1 0.7374 -2.1443 -1.9995 29 1 1.5294 -2.5968 -0.4709 30 1 2.4628 -2.5818 -1.9865 31 1 3.9890 -1.5335 -3.0216 32 1 2.4526 -1.1840 -3.8496 33 1 5.3665 -1.2257 -4.8388 34 1 3.9824 -0.9626 -5.9263 35 1 6.0414 0.0280 -6.8766 36 1 6.2494 1.0155 -5.4096 37 1 3.8813 1.1291 -7.3344 38 1 6.1094 3.1211 -6.7116 39 1 5.9527 2.1736 -8.2103 40 1 4.7369 3.4096 -7.8076 41 1 3.1149 2.9986 -5.9183 42 1 4.5152 2.7758 -4.8417 43 1 2.3327 0.7119 -5.3861 44 1 2.5053 1.6788 -3.9018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136317739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:11 Heat of formation + Delta-G solvation = -32.373430 kcal Electronic energy + Delta-G solvation = -21565.976499 eV Core-core repulsion = 18518.276186 eV Total energy + Delta-G solvation = -3047.700313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.74358 -38.41132 -35.53650 -34.39966 -32.74528 -30.81976 -30.66536 -28.89980 -26.21987 -25.69408 -25.05039 -23.17039 -22.08276 -20.90179 -19.67150 -18.26797 -16.98320 -16.38010 -15.75750 -15.47022 -15.16976 -14.59569 -14.52705 -14.33507 -13.98665 -13.68580 -13.02312 -12.91129 -12.65246 -12.52443 -12.39039 -12.21255 -12.07741 -11.83926 -11.77740 -11.51006 -11.46394 -11.17440 -11.06213 -10.73126 -10.70201 -10.33728 -10.25505 -10.12669 -9.62931 -9.31511 -8.94745 -8.62149 -8.14868 -7.68148 -6.13561 -4.13918 3.24282 3.33296 3.38156 3.41059 3.58722 4.17434 4.36562 4.68673 4.74229 4.75694 5.04391 5.19466 5.23975 5.30600 5.35716 5.39241 5.48571 5.54281 5.58300 5.60416 5.65302 5.73998 5.80142 5.92962 5.95650 6.00593 6.03959 6.15393 6.23463 6.25583 6.28272 6.36504 6.42056 6.50159 6.83950 7.00914 7.18576 7.23269 7.40629 7.65292 8.22951 8.49915 8.86554 8.99533 9.47831 10.99218 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033140 B = 0.004315 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.706108 B = 6487.459312 C = 6787.209215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.230 3.770 3 H 0.062 0.938 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.075 3.925 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.591 5.591 13 C 0.083 3.917 14 C 0.507 3.493 15 O -0.534 6.534 16 C 0.040 3.960 17 N -0.519 5.519 18 C 0.057 3.943 19 C -0.110 4.110 20 C -0.095 4.095 21 C -0.145 4.145 22 C -0.108 4.108 23 C 0.054 3.946 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.031 0.969 27 H 0.266 0.734 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.023 0.977 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 0.190 -20.260 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.128 3.872 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.714 3.286 9 H -0.205 1.205 10 H -0.222 1.222 11 H -0.188 1.188 12 N -0.323 5.323 13 C -0.061 4.061 14 C 0.293 3.707 15 O -0.411 6.411 16 C -0.091 4.091 17 N -0.244 5.244 18 C -0.071 4.071 19 C -0.148 4.148 20 C -0.114 4.114 21 C -0.202 4.202 22 C -0.146 4.146 23 C -0.073 4.073 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.041 0.959 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.310 1.050 -19.659 19.822 hybrid contribution -1.266 0.041 -0.146 1.275 sum 1.044 1.091 -19.805 19.862 Atomic orbital electron populations 1.22440 0.99197 1.00999 0.99107 1.19247 0.89821 0.95239 0.82856 0.92010 1.21171 1.32606 1.14226 0.88528 0.90339 1.24864 0.95683 0.96577 0.95628 1.69872 1.45271 1.40224 0.97967 0.86905 0.80359 0.83873 0.77476 1.20457 1.22157 1.18810 1.47883 1.49607 1.11784 1.23039 1.21638 0.98711 0.82993 1.02770 1.20270 0.78915 0.87310 0.84231 1.90629 1.57153 1.16963 1.76327 1.21998 0.98436 0.95068 0.93605 1.61521 1.29033 1.14853 1.18984 1.22098 0.96908 0.96024 0.92104 1.21629 0.97999 0.96413 0.98737 1.21204 0.97253 0.96158 0.96742 1.21805 0.99917 0.98615 0.99901 1.21608 0.99256 0.97316 0.96432 1.22186 0.93298 0.93501 0.98363 0.92648 0.93239 0.94981 0.92451 0.93938 0.89587 0.92669 0.88193 0.92754 0.90741 0.95248 0.91771 0.90864 0.91858 0.92508 0.92979 0.92875 0.91896 0.90755 0.95868 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.67 37.15 0.32 -3.13 16 2 C 0.23 5.59 2.23 -69.09 -0.15 5.44 16 3 H 0.06 1.68 5.96 -51.93 -0.31 1.37 16 4 C -0.53 -14.63 8.57 -34.44 -0.30 -14.93 16 5 H 0.08 2.33 7.58 -52.48 -0.40 1.94 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 8 Si 0.88 22.04 24.37 -169.99 -4.14 17.89 16 9 H -0.28 -6.60 6.87 56.52 0.39 -6.22 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 12 N -0.59 -12.14 2.75 -175.26 -0.48 -12.62 16 13 C 0.08 1.33 9.12 59.85 0.55 1.88 16 14 C 0.51 10.15 7.21 -10.99 -0.08 10.07 16 15 O -0.53 -12.70 14.04 5.56 0.08 -12.62 16 16 C 0.04 0.60 3.91 -4.98 -0.02 0.58 16 17 N -0.52 -7.60 4.35 -236.11 -1.03 -8.63 16 18 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 19 C -0.11 -1.11 5.38 -26.65 -0.14 -1.26 16 20 C -0.09 -0.95 2.79 -90.50 -0.25 -1.20 16 21 C -0.15 -1.24 9.20 37.16 0.34 -0.89 16 22 C -0.11 -1.31 5.38 -26.65 -0.14 -1.45 16 23 C 0.05 0.77 5.12 -3.83 -0.02 0.75 16 24 H 0.05 1.11 7.67 -51.93 -0.40 0.72 16 25 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 1.53 7.02 -51.93 -0.36 1.17 16 30 H 0.05 0.72 6.61 -51.93 -0.34 0.38 16 31 H 0.10 1.35 7.55 -51.93 -0.39 0.96 16 32 H 0.05 0.70 7.90 -51.93 -0.41 0.29 16 33 H 0.07 0.78 8.01 -51.92 -0.42 0.37 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 1.56 6.06 -51.93 -0.31 1.25 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -32.18 332.09 -7.58 -39.76 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.77 Total: -0.99 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.01 Total: -1.48 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.74 Total: -47.56 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.18 -7.58 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136317739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.385 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds