Wall clock time and date at job start Mon Mar 30 2020 01:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 C 1.50695 * 109.47374 * 120.00211 * 2 1 3 5 5 H 1.08003 * 119.99772 * 119.99925 * 4 2 1 6 6 C 1.37879 * 120.00108 * 299.99803 * 4 2 1 7 7 N 1.31510 * 120.00030 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 119.99753 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47378 * 89.99798 * 8 6 4 10 10 H 1.48501 * 109.47083 * 209.99677 * 8 6 4 11 11 H 1.48504 * 109.47464 * 329.99663 * 8 6 4 12 12 N 1.46505 * 109.47068 * 240.00372 * 2 1 3 13 13 C 1.46500 * 119.99653 * 299.99872 * 12 2 1 14 14 C 1.34775 * 120.00170 * 119.99658 * 12 2 1 15 15 O 1.21279 * 119.99907 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99921 * 180.02562 * 14 12 2 17 17 N 1.46902 * 109.46839 * 173.73332 * 16 14 12 18 18 C 1.46846 * 110.99898 * 169.40044 * 17 16 14 19 19 C 1.53039 * 109.52545 * 185.84075 * 18 17 16 20 20 C 1.53118 * 109.27546 * 300.81837 * 19 18 17 21 21 C 1.52999 * 109.57510 * 177.58848 * 20 19 18 22 22 C 1.53120 * 109.16034 * 57.65421 * 20 19 18 23 23 C 1.46847 * 111.00084 * 293.60701 * 17 16 14 24 24 H 1.08999 * 109.47146 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47096 * 299.99941 * 1 2 3 26 26 H 1.08995 * 109.47519 * 59.99605 * 1 2 3 27 27 H 0.96999 * 120.00587 * 180.02562 * 7 6 4 28 28 H 1.09006 * 109.47122 * 90.00281 * 13 12 2 29 29 H 1.08998 * 109.47340 * 330.00162 * 13 12 2 30 30 H 1.09003 * 109.47045 * 209.99777 * 13 12 2 31 31 H 1.08994 * 109.47493 * 293.73099 * 16 14 12 32 32 H 1.09001 * 109.47143 * 53.73851 * 16 14 12 33 33 H 1.09010 * 109.46126 * 305.85135 * 18 17 16 34 34 H 1.08995 * 109.46603 * 65.81964 * 18 17 16 35 35 H 1.08996 * 109.50917 * 180.87516 * 19 18 17 36 36 H 1.08997 * 109.50223 * 60.75728 * 19 18 17 37 37 H 1.09004 * 109.52358 * 297.74675 * 20 19 18 38 38 H 1.09002 * 109.47209 * 300.28528 * 21 20 19 39 39 H 1.09009 * 109.47176 * 60.28312 * 21 20 19 40 40 H 1.08994 * 109.47537 * 180.28196 * 21 20 19 41 41 H 1.09006 * 109.50048 * 182.40283 * 22 20 19 42 42 H 1.08995 * 109.53493 * 62.30683 * 22 20 19 43 43 H 1.09000 * 109.46024 * 294.17718 * 23 17 16 44 44 H 1.08997 * 109.46110 * 54.15594 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5564 8 14 0.6248 1.2789 2.6541 9 1 -0.8028 0.8725 2.6998 10 1 0.9760 1.9949 3.9069 11 1 0.8470 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4281 14 6 2.7930 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8912 16 6 3.2949 -0.7457 -3.3142 17 7 3.9837 0.2144 -4.1869 18 6 4.7006 -0.4760 -5.2665 19 6 5.5216 0.5384 -6.0659 20 6 4.5847 1.6005 -6.6479 21 6 5.4048 2.6518 -7.3983 22 6 3.8147 2.2711 -5.5068 23 6 3.0432 1.2064 -4.7237 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.9028 -0.5286 4.4375 28 1 0.7374 -2.1443 -1.9995 29 1 1.5294 -2.5968 -0.4709 30 1 2.4628 -2.5818 -1.9865 31 1 3.9890 -1.5335 -3.0216 32 1 2.4526 -1.1840 -3.8496 33 1 5.3665 -1.2257 -4.8388 34 1 3.9824 -0.9626 -5.9263 35 1 6.0414 0.0280 -6.8766 36 1 6.2494 1.0155 -5.4096 37 1 3.8813 1.1291 -7.3344 38 1 6.1094 3.1211 -6.7116 39 1 5.9527 2.1736 -8.2103 40 1 4.7369 3.4096 -7.8076 41 1 3.1149 2.9986 -5.9183 42 1 4.5152 2.7758 -4.8417 43 1 2.3327 0.7119 -5.3861 44 1 2.5053 1.6788 -3.9018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136317739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:11 Heat of formation + Delta-G solvation = -54.730017 kcal Electronic energy + Delta-G solvation = -21566.945953 eV Core-core repulsion = 18518.276186 eV Total energy + Delta-G solvation = -3048.669768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09344 -39.60674 -37.21128 -35.45881 -34.73276 -32.48211 -31.73621 -29.94573 -27.61529 -27.20026 -26.72313 -24.11773 -23.28183 -22.35657 -20.55133 -19.86648 -18.93665 -17.94727 -17.30805 -16.83107 -16.53377 -16.07942 -15.60494 -15.33584 -15.10481 -14.96326 -14.71822 -14.24202 -14.12765 -13.95426 -13.80696 -13.48244 -13.27461 -13.12275 -12.99165 -12.86000 -12.68620 -12.64105 -12.39828 -12.09759 -12.05522 -11.59851 -11.56785 -11.36724 -11.19825 -11.13351 -10.80175 -10.50534 -9.36563 -9.17971 -8.35875 -6.39862 1.24542 1.34581 1.43240 1.80892 2.20630 2.26931 2.99718 3.01471 3.70654 3.88360 3.90603 3.94428 4.25354 4.29922 4.34767 4.42797 4.47866 4.52486 4.54770 4.57459 4.60824 4.63324 4.76787 4.80340 4.84187 4.87217 4.97711 4.99619 5.04882 5.08143 5.17528 5.26067 5.28634 5.31388 5.37028 5.50789 5.57236 5.74364 6.01938 6.21473 6.25027 6.62211 6.79509 7.22795 7.45658 8.80247 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033140 B = 0.004315 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.706108 B = 6487.459312 C = 6787.209215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.233 3.767 3 H 0.027 0.973 4 C -0.525 4.525 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.941 3.059 9 H -0.253 1.253 10 H -0.296 1.296 11 H -0.265 1.265 12 N -0.600 5.600 13 C 0.080 3.920 14 C 0.497 3.503 15 O -0.582 6.582 16 C 0.052 3.948 17 N -0.545 5.545 18 C 0.056 3.944 19 C -0.109 4.109 20 C -0.090 4.090 21 C -0.142 4.142 22 C -0.106 4.106 23 C 0.057 3.943 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.054 0.946 27 H 0.268 0.732 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.040 0.960 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 -0.527 -23.161 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.129 3.871 3 H 0.045 0.955 4 C -0.564 4.564 5 H 0.064 0.936 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.769 3.231 9 H -0.178 1.178 10 H -0.223 1.223 11 H -0.190 1.190 12 N -0.332 5.332 13 C -0.063 4.063 14 C 0.285 3.715 15 O -0.462 6.462 16 C -0.078 4.078 17 N -0.271 5.271 18 C -0.071 4.071 19 C -0.147 4.147 20 C -0.109 4.109 21 C -0.200 4.200 22 C -0.144 4.144 23 C -0.070 4.070 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.429 0.294 -22.594 22.641 hybrid contribution -0.905 0.221 0.732 1.185 sum 0.524 0.515 -21.862 21.875 Atomic orbital electron populations 1.22281 0.96680 1.02216 0.99711 1.18892 0.91688 0.93318 0.83196 0.95486 1.21393 1.31618 1.13114 0.90264 0.93571 1.25637 0.97187 0.99436 0.95356 1.69996 1.47185 1.42160 0.98585 0.85973 0.79938 0.80215 0.77000 1.17801 1.22312 1.18986 1.47976 1.49777 1.13476 1.21936 1.21863 1.01537 0.80345 1.02507 1.21274 0.77837 0.86998 0.85375 1.90605 1.58674 1.19309 1.77609 1.21932 0.99803 0.94660 0.91439 1.61472 1.29478 1.15562 1.20568 1.22200 0.97120 0.96262 0.91492 1.21648 0.97625 0.96343 0.99036 1.21182 0.97343 0.96356 0.95973 1.21777 0.99775 0.98443 0.99965 1.21587 0.99028 0.97075 0.96712 1.22082 0.93654 0.93950 0.97364 0.91105 0.94150 0.92746 0.92262 0.90782 0.91890 0.89317 0.86429 0.89711 0.89906 0.93436 0.89259 0.92653 0.90583 0.93416 0.91425 0.92361 0.90966 0.93276 0.94202 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.31 8.67 71.98 0.62 -5.69 16 2 C 0.23 11.38 2.23 44.24 0.10 11.47 16 3 H 0.03 1.52 5.96 -2.39 -0.01 1.50 16 4 C -0.53 -29.92 8.57 25.60 0.22 -29.70 16 5 H 0.05 2.85 7.58 -2.91 -0.02 2.83 16 6 C 0.02 1.31 5.45 84.66 0.46 1.77 16 7 N -0.94 -58.27 13.96 21.45 0.30 -57.97 16 8 Si 0.94 45.90 24.37 68.60 1.67 47.58 16 9 H -0.25 -11.24 6.87 99.48 0.68 -10.56 16 10 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 11 H -0.26 -12.89 6.53 99.48 0.65 -12.24 16 12 N -0.60 -24.28 2.75 -826.80 -2.28 -26.56 16 13 C 0.08 2.40 9.12 127.77 1.17 3.56 16 14 C 0.50 19.73 7.21 87.66 0.63 20.36 16 15 O -0.58 -28.56 14.04 -3.03 -0.04 -28.60 16 16 C 0.05 1.44 3.91 85.56 0.33 1.77 16 17 N -0.55 -15.10 4.35 -900.93 -3.92 -19.02 16 18 C 0.06 1.10 5.46 86.33 0.47 1.57 16 19 C -0.11 -1.93 5.38 30.65 0.16 -1.76 16 20 C -0.09 -1.58 2.79 -10.71 -0.03 -1.61 16 21 C -0.14 -2.11 9.20 71.98 0.66 -1.45 16 22 C -0.11 -2.49 5.38 30.65 0.16 -2.32 16 23 C 0.06 1.57 5.12 86.33 0.44 2.01 16 24 H 0.07 2.70 7.67 -2.39 -0.02 2.69 16 25 H 0.04 1.75 3.27 -2.38 -0.01 1.74 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.06 2.20 7.02 -2.39 -0.02 2.18 16 30 H 0.09 2.05 6.61 -2.39 -0.02 2.03 16 31 H 0.12 2.82 7.55 -2.39 -0.02 2.80 16 32 H 0.09 1.84 7.90 -2.39 -0.02 1.82 16 33 H 0.08 1.47 8.01 -2.38 -0.02 1.45 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 1.85 6.06 -2.39 -0.01 1.83 16 Total: -1.00 -73.27 332.09 2.02 -71.26 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.87 Total: 13.33 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.41 Total: -0.01 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -5.89 Total: -103.54 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.04 Total: -28.60 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.67 Total: 47.58 kcal Total: -73.27 2.02 -71.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136317739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.526 kcal (2) G-P(sol) polarization free energy of solvation -73.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds