Wall clock time and date at job start Mon Mar 30 2020 01:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.50700 * 109.46896 * 239.99876 * 2 1 3 5 5 H 1.07999 * 119.99976 * 240.00822 * 4 2 1 6 6 C 1.37876 * 119.99897 * 60.00173 * 4 2 1 7 7 N 1.31515 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99818 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47265 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47446 * 120.00299 * 8 6 4 11 11 H 1.48504 * 109.47253 * 239.99839 * 8 6 4 12 12 N 1.46499 * 109.46996 * 120.00183 * 2 1 3 13 13 C 1.46504 * 119.99964 * 59.99781 * 12 2 1 14 14 C 1.34781 * 120.00003 * 239.99929 * 12 2 1 15 15 O 1.21271 * 119.99735 * 359.97438 * 14 12 2 16 16 C 1.50700 * 120.00003 * 180.02562 * 14 12 2 17 17 N 1.46895 * 109.47146 * 186.26583 * 16 14 12 18 18 C 1.46842 * 110.99836 * 66.39223 * 17 16 14 19 19 C 1.53047 * 109.51345 * 185.84743 * 18 17 16 20 20 C 1.53124 * 109.27550 * 300.80454 * 19 18 17 21 21 C 1.52997 * 109.57113 * 177.60258 * 20 19 18 22 22 C 1.53120 * 109.15379 * 57.66893 * 20 19 18 23 23 C 1.46850 * 111.00078 * 190.60209 * 17 16 14 24 24 H 1.09002 * 109.46620 * 300.00218 * 1 2 3 25 25 H 1.08998 * 109.47065 * 59.99675 * 1 2 3 26 26 H 1.08991 * 109.47591 * 180.02562 * 1 2 3 27 27 H 0.96999 * 119.99786 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.46655 * 269.99876 * 13 12 2 29 29 H 1.08997 * 109.47376 * 29.99465 * 13 12 2 30 30 H 1.08999 * 109.47224 * 150.00526 * 13 12 2 31 31 H 1.09000 * 109.47142 * 66.26513 * 16 14 12 32 32 H 1.09007 * 109.47163 * 306.26664 * 16 14 12 33 33 H 1.09001 * 109.46704 * 305.85034 * 18 17 16 34 34 H 1.09001 * 109.46641 * 65.83618 * 18 17 16 35 35 H 1.08997 * 109.50300 * 60.75661 * 19 18 17 36 36 H 1.08999 * 109.50125 * 180.87889 * 19 18 17 37 37 H 1.09004 * 109.52983 * 297.76520 * 20 19 18 38 38 H 1.08996 * 109.46899 * 300.29241 * 21 20 19 39 39 H 1.08998 * 109.47273 * 60.29771 * 21 20 19 40 40 H 1.09002 * 109.47139 * 180.29693 * 21 20 19 41 41 H 1.08994 * 109.50610 * 182.39631 * 22 20 19 42 42 H 1.09001 * 109.53349 * 62.29622 * 22 20 19 43 43 H 1.08997 * 109.46299 * 294.17551 * 23 17 16 44 44 H 1.08998 * 109.45957 * 54.15438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6037 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0933 1.4280 14 6 2.7932 -0.0357 2.0834 15 8 3.0866 1.1252 1.8912 16 6 3.2960 -0.7463 3.3135 17 7 3.9847 0.2137 4.1865 18 6 3.0440 1.2047 4.7242 19 6 3.8155 2.2695 5.5074 20 6 4.5862 1.5987 6.6479 21 6 5.4073 2.6489 7.3988 22 6 5.5234 0.5374 6.0648 23 6 4.7026 -0.4771 5.2653 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0275 0.0005 27 1 0.7090 1.1614 -3.4844 28 1 0.7375 -2.1443 1.9993 29 1 1.5293 -2.5969 0.4708 30 1 2.4627 -2.5820 1.9864 31 1 3.9904 -1.5336 3.0200 32 1 2.4542 -1.1854 3.8491 33 1 2.5054 1.6774 3.9029 34 1 2.3341 0.7096 5.3868 35 1 4.5159 2.7744 4.8422 36 1 3.1156 2.9964 5.9196 37 1 3.8834 1.1265 7.3344 38 1 6.1081 3.1220 6.7111 39 1 4.7394 3.4038 7.8135 40 1 5.9593 2.1688 8.2069 41 1 6.0438 0.0268 6.8750 42 1 6.2511 1.0147 5.4086 43 1 3.9849 -0.9644 5.9252 44 1 5.3687 -1.2259 4.8369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136317782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:14 Heat of formation + Delta-G solvation = -41.068071 kcal Electronic energy + Delta-G solvation = -21496.770271 eV Core-core repulsion = 18448.692930 eV Total energy + Delta-G solvation = -3048.077341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.63116 -38.28018 -35.33743 -34.32223 -32.80644 -30.76496 -29.95238 -28.59954 -26.10827 -25.49360 -25.14510 -23.11593 -21.98770 -20.77588 -19.62280 -18.20718 -16.59678 -16.34171 -15.62057 -15.19792 -15.13338 -14.53868 -14.32018 -14.28283 -13.97313 -13.62337 -13.02385 -12.63075 -12.53702 -12.38671 -12.34083 -12.00038 -11.75606 -11.61209 -11.44583 -11.37622 -11.13208 -11.02146 -10.80198 -10.69091 -10.64359 -10.28885 -10.20868 -10.19028 -10.14379 -9.13694 -8.83780 -8.40602 -8.07125 -7.51496 -6.04933 -4.12600 3.27367 3.35213 3.37883 3.47946 3.71684 4.27141 4.43866 4.73227 4.78716 4.80328 5.14339 5.26048 5.28896 5.36068 5.41940 5.46148 5.53113 5.59615 5.62332 5.65585 5.70290 5.80475 5.84052 5.98367 6.04502 6.05298 6.08297 6.20068 6.31333 6.38582 6.47201 6.77150 6.85395 7.07301 7.14772 7.26963 7.49349 7.59074 7.75151 8.05751 8.23633 8.59375 8.87690 9.16088 9.54088 11.00413 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034476 B = 0.004011 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.969676 B = 6978.636095 C = 7062.725084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.597 5.597 13 C 0.085 3.915 14 C 0.504 3.496 15 O -0.533 6.533 16 C 0.039 3.961 17 N -0.519 5.519 18 C 0.054 3.946 19 C -0.108 4.108 20 C -0.095 4.095 21 C -0.145 4.145 22 C -0.110 4.110 23 C 0.056 3.944 24 H 0.009 0.991 25 H 0.093 0.907 26 H 0.028 0.972 27 H 0.262 0.738 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 -3.410 17.323 18.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.330 5.330 13 C -0.059 4.059 14 C 0.290 3.710 15 O -0.411 6.411 16 C -0.092 4.092 17 N -0.244 5.244 18 C -0.073 4.073 19 C -0.146 4.146 20 C -0.114 4.114 21 C -0.202 4.202 22 C -0.148 4.148 23 C -0.072 4.072 24 H 0.028 0.972 25 H 0.111 0.889 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.041 0.959 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.842 -2.422 16.774 17.626 hybrid contribution -0.382 -1.145 -0.427 1.280 sum 4.461 -3.567 16.347 17.316 Atomic orbital electron populations 1.22076 0.98325 0.99294 1.00685 1.18905 0.90723 0.94558 0.79971 0.91922 1.21369 1.31628 1.12948 0.90344 0.92226 1.24898 0.94980 0.94993 0.98970 1.69893 1.36497 1.22632 1.23592 0.86446 0.78570 0.79592 0.82804 1.19826 1.20993 1.20907 1.48254 1.49357 1.11574 1.23777 1.21570 0.98536 0.83539 1.02286 1.20228 0.79211 0.87377 0.84226 1.90630 1.57292 1.16888 1.76245 1.22020 0.98271 0.95044 0.93889 1.61524 1.29054 1.14885 1.18897 1.22186 0.93264 0.93469 0.98402 1.21610 0.99252 0.97347 0.96396 1.21206 0.97236 0.96153 0.96770 1.21803 0.99907 0.98635 0.99879 1.21627 0.97995 0.96435 0.98702 1.22094 0.96891 0.95997 0.92171 0.97155 0.88893 0.95250 0.92781 0.94115 0.90098 0.93059 0.88485 0.92936 0.88958 0.95919 0.90752 0.91870 0.91870 0.92516 0.92865 0.93015 0.91841 0.90896 0.95309 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 2 C 0.26 6.68 2.64 -69.08 -0.18 6.50 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.28 7.99 -34.44 -0.28 -14.56 16 5 H 0.06 1.60 7.33 -52.49 -0.38 1.21 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.60 -12.85 2.75 -175.26 -0.48 -13.33 16 13 C 0.08 1.42 9.12 59.85 0.55 1.97 16 14 C 0.50 10.58 7.20 -10.98 -0.08 10.50 16 15 O -0.53 -13.32 14.04 5.57 0.08 -13.24 16 16 C 0.04 0.61 3.91 -4.98 -0.02 0.59 16 17 N -0.52 -7.94 4.35 -236.11 -1.03 -8.96 16 18 C 0.05 0.81 5.12 -3.83 -0.02 0.79 16 19 C -0.11 -1.37 5.38 -26.64 -0.14 -1.52 16 20 C -0.10 -0.99 2.79 -90.50 -0.25 -1.24 16 21 C -0.14 -1.29 9.20 37.16 0.34 -0.95 16 22 C -0.11 -1.16 5.38 -26.65 -0.14 -1.30 16 23 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.45 7.02 -51.93 -0.36 1.08 16 30 H 0.05 0.70 6.61 -51.93 -0.34 0.35 16 31 H 0.10 1.36 7.55 -51.93 -0.39 0.97 16 32 H 0.05 0.73 7.90 -51.93 -0.41 0.32 16 33 H 0.09 1.68 6.06 -51.93 -0.31 1.37 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -30.95 338.91 -8.63 -39.58 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.91 Total: -0.51 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.01 Total: -0.10 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.88 Total: -47.00 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.95 -8.63 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136317782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.484 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds