Wall clock time and date at job start Mon Mar 30 2020 01:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.50700 * 109.46896 * 239.99876 * 2 1 3 5 5 H 1.07999 * 119.99976 * 240.00822 * 4 2 1 6 6 C 1.37876 * 119.99897 * 60.00173 * 4 2 1 7 7 N 1.31515 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99818 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47265 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47446 * 120.00299 * 8 6 4 11 11 H 1.48504 * 109.47253 * 239.99839 * 8 6 4 12 12 N 1.46499 * 109.46996 * 120.00183 * 2 1 3 13 13 C 1.46504 * 119.99964 * 59.99781 * 12 2 1 14 14 C 1.34781 * 120.00003 * 239.99929 * 12 2 1 15 15 O 1.21271 * 119.99735 * 359.97438 * 14 12 2 16 16 C 1.50700 * 120.00003 * 180.02562 * 14 12 2 17 17 N 1.46895 * 109.47146 * 186.26583 * 16 14 12 18 18 C 1.46842 * 110.99836 * 66.39223 * 17 16 14 19 19 C 1.53047 * 109.51345 * 185.84743 * 18 17 16 20 20 C 1.53124 * 109.27550 * 300.80454 * 19 18 17 21 21 C 1.52997 * 109.57113 * 177.60258 * 20 19 18 22 22 C 1.53120 * 109.15379 * 57.66893 * 20 19 18 23 23 C 1.46850 * 111.00078 * 190.60209 * 17 16 14 24 24 H 1.09002 * 109.46620 * 300.00218 * 1 2 3 25 25 H 1.08998 * 109.47065 * 59.99675 * 1 2 3 26 26 H 1.08991 * 109.47591 * 180.02562 * 1 2 3 27 27 H 0.96999 * 119.99786 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.46655 * 269.99876 * 13 12 2 29 29 H 1.08997 * 109.47376 * 29.99465 * 13 12 2 30 30 H 1.08999 * 109.47224 * 150.00526 * 13 12 2 31 31 H 1.09000 * 109.47142 * 66.26513 * 16 14 12 32 32 H 1.09007 * 109.47163 * 306.26664 * 16 14 12 33 33 H 1.09001 * 109.46704 * 305.85034 * 18 17 16 34 34 H 1.09001 * 109.46641 * 65.83618 * 18 17 16 35 35 H 1.08997 * 109.50300 * 60.75661 * 19 18 17 36 36 H 1.08999 * 109.50125 * 180.87889 * 19 18 17 37 37 H 1.09004 * 109.52983 * 297.76520 * 20 19 18 38 38 H 1.08996 * 109.46899 * 300.29241 * 21 20 19 39 39 H 1.08998 * 109.47273 * 60.29771 * 21 20 19 40 40 H 1.09002 * 109.47139 * 180.29693 * 21 20 19 41 41 H 1.08994 * 109.50610 * 182.39631 * 22 20 19 42 42 H 1.09001 * 109.53349 * 62.29622 * 22 20 19 43 43 H 1.08997 * 109.46299 * 294.17551 * 23 17 16 44 44 H 1.08998 * 109.45957 * 54.15438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6037 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0933 1.4280 14 6 2.7932 -0.0357 2.0834 15 8 3.0866 1.1252 1.8912 16 6 3.2960 -0.7463 3.3135 17 7 3.9847 0.2137 4.1865 18 6 3.0440 1.2047 4.7242 19 6 3.8155 2.2695 5.5074 20 6 4.5862 1.5987 6.6479 21 6 5.4073 2.6489 7.3988 22 6 5.5234 0.5374 6.0648 23 6 4.7026 -0.4771 5.2653 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0275 0.0005 27 1 0.7090 1.1614 -3.4844 28 1 0.7375 -2.1443 1.9993 29 1 1.5293 -2.5969 0.4708 30 1 2.4627 -2.5820 1.9864 31 1 3.9904 -1.5336 3.0200 32 1 2.4542 -1.1854 3.8491 33 1 2.5054 1.6774 3.9029 34 1 2.3341 0.7096 5.3868 35 1 4.5159 2.7744 4.8422 36 1 3.1156 2.9964 5.9196 37 1 3.8834 1.1265 7.3344 38 1 6.1081 3.1220 6.7111 39 1 4.7394 3.4038 7.8135 40 1 5.9593 2.1688 8.2069 41 1 6.0438 0.0268 6.8750 42 1 6.2511 1.0147 5.4086 43 1 3.9849 -0.9644 5.9252 44 1 5.3687 -1.2259 4.8369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136317782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:13 Heat of formation + Delta-G solvation = -60.921578 kcal Electronic energy + Delta-G solvation = -21497.631184 eV Core-core repulsion = 18448.692930 eV Total energy + Delta-G solvation = -3048.938254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02415 -39.55992 -37.08764 -35.44639 -34.74513 -31.74542 -31.70640 -29.80634 -27.54178 -27.31719 -26.64364 -24.11886 -23.21128 -22.34220 -20.55350 -19.86294 -18.51137 -17.91984 -17.13524 -16.66497 -16.57186 -15.99047 -15.54945 -15.32896 -15.16104 -14.83977 -14.54859 -14.02012 -13.96871 -13.82567 -13.49923 -13.26814 -13.06230 -13.02090 -12.84643 -12.70215 -12.68552 -12.57315 -12.39687 -12.19475 -12.10935 -12.08704 -11.56928 -11.23962 -11.15233 -11.12187 -10.60266 -10.39197 -9.30050 -9.16434 -8.14168 -6.30720 1.40619 1.42498 1.53829 1.87646 2.26997 2.46382 3.04206 3.13766 3.75638 3.88096 3.90417 3.95294 4.26033 4.30559 4.34247 4.46796 4.53488 4.56187 4.63083 4.74444 4.76950 4.77864 4.83334 4.87317 4.89488 4.98028 5.03722 5.04762 5.08191 5.17540 5.26945 5.28407 5.36955 5.48274 5.56508 5.61405 5.69080 6.00229 6.10232 6.17784 6.24541 6.78298 6.90265 7.35166 7.56388 8.90416 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034476 B = 0.004011 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.969676 B = 6978.636095 C = 7062.725084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.263 3.737 3 H 0.005 0.995 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.605 5.605 13 C 0.081 3.919 14 C 0.492 3.508 15 O -0.587 6.587 16 C 0.053 3.947 17 N -0.544 5.544 18 C 0.058 3.942 19 C -0.106 4.106 20 C -0.090 4.090 21 C -0.142 4.142 22 C -0.108 4.108 23 C 0.056 3.944 24 H 0.017 0.983 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.140 -6.042 19.227 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.161 3.839 3 H 0.023 0.977 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.188 1.188 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.337 5.337 13 C -0.062 4.062 14 C 0.280 3.720 15 O -0.467 6.467 16 C -0.078 4.078 17 N -0.270 5.270 18 C -0.070 4.070 19 C -0.144 4.144 20 C -0.108 4.108 21 C -0.199 4.199 22 C -0.146 4.146 23 C -0.071 4.071 24 H 0.036 0.964 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.544 -5.100 18.711 20.171 hybrid contribution -0.602 -0.276 -0.994 1.195 sum 4.942 -5.375 17.717 19.163 Atomic orbital electron populations 1.21851 0.97288 1.00012 0.99711 1.18474 0.91457 0.92131 0.81889 0.97686 1.21630 1.31709 1.13010 0.91169 0.92000 1.25767 0.95114 0.95666 1.02121 1.70040 1.37486 1.23973 1.24311 0.85387 0.78201 0.78487 0.78807 1.18757 1.19961 1.21245 1.48272 1.49414 1.13451 1.22583 1.21828 1.01121 0.80619 1.02586 1.21296 0.78213 0.87014 0.85437 1.90605 1.59039 1.19482 1.77599 1.21934 0.99668 0.94670 0.91489 1.61472 1.29382 1.15582 1.20574 1.22060 0.93679 0.94047 0.97210 1.21590 0.99010 0.97041 0.96761 1.21183 0.97350 0.96425 0.95890 1.21774 0.99754 0.98422 0.99972 1.21649 0.97586 0.96310 0.99065 1.22212 0.97101 0.96292 0.91491 0.96413 0.91539 0.93446 0.92704 0.91856 0.91336 0.89171 0.86150 0.90146 0.93353 0.94354 0.93271 0.91084 0.90609 0.93387 0.92418 0.91292 0.89109 0.92597 0.93534 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 8.97 71.98 0.65 -5.79 16 2 C 0.26 14.03 2.64 44.25 0.12 14.15 16 3 H 0.01 0.33 6.90 -2.39 -0.02 0.32 16 4 C -0.54 -29.69 7.99 25.60 0.20 -29.49 16 5 H 0.06 3.31 7.33 -2.91 -0.02 3.29 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 8 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 9 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 12 N -0.61 -26.04 2.75 -826.78 -2.28 -28.32 16 13 C 0.08 2.52 9.12 127.77 1.17 3.68 16 14 C 0.49 20.88 7.20 87.66 0.63 21.51 16 15 O -0.59 -30.98 14.04 -3.00 -0.04 -31.02 16 16 C 0.05 1.55 3.91 85.56 0.33 1.88 16 17 N -0.54 -15.97 4.35 -900.93 -3.92 -19.88 16 18 C 0.06 1.72 5.12 86.33 0.44 2.17 16 19 C -0.11 -2.68 5.38 30.65 0.16 -2.52 16 20 C -0.09 -1.68 2.79 -10.71 -0.03 -1.71 16 21 C -0.14 -2.23 9.20 71.98 0.66 -1.57 16 22 C -0.11 -2.00 5.38 30.65 0.16 -1.83 16 23 C 0.06 1.14 5.46 86.32 0.47 1.61 16 24 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 25 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 26 H 0.05 2.11 7.67 -2.39 -0.02 2.09 16 27 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.07 2.32 7.02 -2.39 -0.02 2.30 16 30 H 0.09 2.09 6.61 -2.39 -0.02 2.08 16 31 H 0.12 2.95 7.55 -2.39 -0.02 2.93 16 32 H 0.08 1.92 7.90 -2.38 -0.02 1.90 16 33 H 0.05 1.86 6.06 -2.39 -0.01 1.85 16 34 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 1.54 8.01 -2.39 -0.02 1.52 16 Total: -1.00 -71.45 338.91 2.40 -69.05 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.94 Total: 15.04 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 5.42 Total: 3.24 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -5.95 Total: -101.97 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.04 Total: -31.02 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -71.45 2.40 -69.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136317782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.131 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds