Wall clock time and date at job start Mon Mar 30 2020 01:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.46847 * 111.00092 * 294.21578 * 12 11 10 14 14 C 1.53038 * 109.52364 * 174.15658 * 13 12 11 15 15 C 1.53122 * 109.27432 * 59.17966 * 14 13 12 16 16 C 1.53114 * 109.16137 * 302.34059 * 15 14 13 17 17 H 1.09000 * 109.50902 * 297.71942 * 16 15 14 18 18 C 1.53006 * 109.53884 * 177.61786 * 16 15 14 19 19 C 1.53003 * 109.46881 * 65.17731 * 18 16 15 20 20 C 1.50699 * 109.47048 * 180.02562 * 19 18 16 21 21 N 1.34771 * 120.00188 * 180.02562 * 20 19 18 22 22 O 1.21284 * 119.99654 * 0.02562 * 20 19 18 23 23 C 1.46846 * 111.00112 * 170.00136 * 12 11 10 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 28 28 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 29 29 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 30 30 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 31 31 H 1.09004 * 109.45934 * 294.17597 * 13 12 11 32 32 H 1.09003 * 109.46451 * 54.14251 * 13 12 11 33 33 H 1.08992 * 109.50777 * 299.23658 * 14 13 12 34 34 H 1.08999 * 109.53462 * 179.13690 * 14 13 12 35 35 H 1.09008 * 109.52195 * 182.44040 * 15 14 13 36 36 H 1.08997 * 109.52605 * 62.25191 * 15 14 13 37 37 H 1.08994 * 109.47066 * 185.18208 * 18 16 15 38 38 H 1.09002 * 109.46524 * 305.18257 * 18 16 15 39 39 H 1.09001 * 109.47027 * 300.00263 * 19 18 16 40 40 H 1.08997 * 109.46715 * 60.00302 * 19 18 16 41 41 H 0.96999 * 119.99956 * 0.02562 * 21 20 19 42 42 H 0.96996 * 119.99943 * 180.02562 * 21 20 19 43 43 H 1.08997 * 109.46205 * 305.85839 * 23 12 11 44 44 H 1.09001 * 109.46187 * 65.82829 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 7 2.4351 -6.1035 0.0212 13 6 3.2053 -6.1436 -1.2285 14 6 4.2852 -7.2234 -1.1293 15 6 3.6219 -8.5795 -0.8729 16 6 2.7874 -8.4966 0.4081 17 1 3.4398 -8.2808 1.2542 18 6 2.0731 -9.8295 0.6407 19 6 3.1090 -10.9233 0.9081 20 6 2.4056 -12.2363 1.1365 21 7 3.1217 -13.3489 1.3930 22 8 1.1949 -12.2919 1.0896 23 6 1.7508 -7.3798 0.2644 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 2.8721 -3.6081 -0.8798 28 1 2.8721 -3.6002 0.9002 29 1 0.8536 -5.0411 0.9058 30 1 0.8541 -5.0485 -0.8741 31 1 2.5377 -6.3726 -2.0592 32 1 3.6751 -5.1745 -1.3968 33 1 4.9612 -6.9877 -0.3075 34 1 4.8470 -7.2637 -2.0625 35 1 4.3898 -9.3447 -0.7585 36 1 2.9756 -8.8336 -1.7130 37 1 1.4085 -9.7405 1.5000 38 1 1.4909 -10.0888 -0.2436 39 1 3.7736 -11.0122 0.0486 40 1 3.6912 -10.6640 1.7923 41 1 4.0900 -13.3044 1.4309 42 1 2.6690 -14.1940 1.5396 43 1 1.1643 -7.3086 1.1804 44 1 1.0902 -7.6031 -0.5733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170731320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:12 Heat of formation + Delta-G solvation = -76.765720 kcal Electronic energy + Delta-G solvation = -20285.455448 eV Core-core repulsion = 17235.830140 eV Total energy + Delta-G solvation = -3049.625308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.94976 -38.99417 -35.54313 -34.01440 -33.57143 -32.40278 -30.91564 -29.65994 -26.59647 -25.10568 -23.77883 -22.37813 -21.45580 -20.45138 -19.67909 -19.62068 -17.65371 -16.98047 -16.28370 -15.89390 -15.48783 -14.96782 -14.58558 -14.33443 -14.29618 -14.10382 -13.79721 -13.36772 -12.96631 -12.67882 -12.31579 -12.12051 -11.93423 -11.57700 -11.31796 -11.23106 -10.96442 -10.81747 -10.64786 -10.60010 -10.54076 -10.29451 -10.17390 -10.14107 -10.04864 -9.51725 -9.26381 -9.00689 -8.29700 -7.97059 -5.95145 -3.97159 2.33500 3.18779 3.36484 3.40478 3.43203 4.14620 4.48154 4.50503 4.62451 4.71877 4.89586 4.94596 5.03301 5.24622 5.38143 5.40363 5.51605 5.52446 5.59876 5.68663 5.74179 5.78019 5.85899 5.93959 5.98043 6.05461 6.18453 6.19395 6.27737 6.39074 6.40024 6.43929 6.77630 6.85140 6.94965 7.19095 7.47130 7.49538 7.73626 7.89448 7.92970 8.05674 8.49035 9.09947 9.66453 11.16301 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046298 B = 0.002693 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.635113 B =10395.578434 C =10749.918379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.051 3.949 14 C -0.116 4.116 15 C -0.116 4.116 16 C -0.084 4.084 17 H 0.080 0.920 18 C -0.099 4.099 19 C -0.142 4.142 20 C 0.514 3.486 21 N -0.861 5.861 22 O -0.543 6.543 23 C 0.060 3.940 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.401 0.599 42 H 0.399 0.601 43 H 0.073 0.927 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.752 -25.217 0.452 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.070 4.070 12 N -0.263 5.263 13 C -0.077 4.077 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.103 4.103 17 H 0.098 0.902 18 C -0.138 4.138 19 C -0.181 4.181 20 C 0.299 3.701 21 N -0.425 5.425 22 O -0.419 6.419 23 C -0.068 4.068 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.229 0.771 42 H 0.229 0.771 43 H 0.091 0.909 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 9.126 -24.843 0.761 26.477 hybrid contribution 0.169 0.431 -0.586 0.747 sum 9.295 -24.412 0.175 26.122 Atomic orbital electron populations 1.69956 1.06048 1.26624 1.51007 1.25033 0.94849 0.99232 0.95451 0.86660 0.79567 0.83179 0.78594 1.20287 1.21345 1.20240 1.21218 0.92991 0.91072 1.50337 0.92753 1.19075 0.94060 0.91419 0.97056 1.21650 0.99109 0.92745 1.00682 1.22273 0.93671 0.90956 1.00148 1.61972 1.26774 1.02915 1.34623 1.22130 0.95512 0.99775 0.90244 1.21584 0.97889 0.94286 1.01647 1.21693 0.98878 0.97334 0.97474 1.21213 0.97106 0.93377 0.98582 0.90211 1.21363 0.96905 0.92378 1.03122 1.21739 1.00042 0.92232 1.04136 1.20904 0.87814 0.86299 0.75036 1.43953 1.11227 1.11510 1.75774 1.90763 1.14367 1.86361 1.50425 1.22070 0.94941 0.89190 1.00588 0.93009 0.96628 0.96882 0.93509 0.92645 0.91279 0.95468 0.95445 0.89987 0.91164 0.91918 0.92126 0.92368 0.91001 0.91286 0.88636 0.88665 0.77090 0.77076 0.90894 0.95275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.22 5.08 -26.73 -0.14 -2.35 16 11 C 0.06 1.03 4.96 -3.82 -0.02 1.01 16 12 N -0.54 -8.28 4.66 -234.67 -1.09 -9.37 16 13 C 0.05 0.72 5.29 -3.83 -0.02 0.70 16 14 C -0.12 -1.26 6.09 -26.65 -0.16 -1.43 16 15 C -0.12 -1.09 4.98 -26.61 -0.13 -1.22 16 16 C -0.08 -0.85 2.35 -90.54 -0.21 -1.06 16 17 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 18 C -0.10 -0.93 3.98 -26.73 -0.11 -1.04 16 19 C -0.14 -0.95 5.46 -27.88 -0.15 -1.10 16 20 C 0.51 4.43 8.10 -10.99 -0.09 4.34 16 21 N -0.86 -4.00 8.87 31.22 0.28 -3.72 16 22 O -0.54 -7.33 16.82 5.55 0.09 -7.24 16 23 C 0.06 0.79 4.74 -3.83 -0.02 0.77 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.98 6.43 -51.93 -0.33 0.65 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.25 7.99 -51.93 -0.41 0.84 16 30 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 1.25 6.21 -51.93 -0.32 0.92 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.44 6.70 -51.92 -0.35 0.09 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.10 0.48 6.63 -51.93 -0.34 0.14 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.40 0.61 8.83 -40.82 -0.36 0.25 16 42 H 0.40 1.63 8.93 -40.82 -0.36 1.27 16 43 H 0.07 0.96 8.01 -51.93 -0.42 0.54 16 44 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -33.94 346.60 -9.32 -43.26 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -7.94 Total: -3.66 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.60 Total: -14.75 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -0.08 Total: -39.83 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.09 Total: -7.24 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.94 -9.32 -43.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170731320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.507 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds