Wall clock time and date at job start Mon Mar 30 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.46847 * 111.00092 * 294.21578 * 12 11 10 14 14 C 1.53038 * 109.52364 * 174.15658 * 13 12 11 15 15 C 1.53122 * 109.27432 * 59.17966 * 14 13 12 16 16 C 1.53114 * 109.16137 * 302.34059 * 15 14 13 17 17 H 1.09000 * 109.50902 * 297.71942 * 16 15 14 18 18 C 1.53006 * 109.53884 * 177.61786 * 16 15 14 19 19 C 1.53003 * 109.46881 * 65.17731 * 18 16 15 20 20 C 1.50699 * 109.47048 * 180.02562 * 19 18 16 21 21 N 1.34771 * 120.00188 * 180.02562 * 20 19 18 22 22 O 1.21284 * 119.99654 * 0.02562 * 20 19 18 23 23 C 1.46846 * 111.00112 * 170.00136 * 12 11 10 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 28 28 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 29 29 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 30 30 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 31 31 H 1.09004 * 109.45934 * 294.17597 * 13 12 11 32 32 H 1.09003 * 109.46451 * 54.14251 * 13 12 11 33 33 H 1.08992 * 109.50777 * 299.23658 * 14 13 12 34 34 H 1.08999 * 109.53462 * 179.13690 * 14 13 12 35 35 H 1.09008 * 109.52195 * 182.44040 * 15 14 13 36 36 H 1.08997 * 109.52605 * 62.25191 * 15 14 13 37 37 H 1.08994 * 109.47066 * 185.18208 * 18 16 15 38 38 H 1.09002 * 109.46524 * 305.18257 * 18 16 15 39 39 H 1.09001 * 109.47027 * 300.00263 * 19 18 16 40 40 H 1.08997 * 109.46715 * 60.00302 * 19 18 16 41 41 H 0.96999 * 119.99956 * 0.02562 * 21 20 19 42 42 H 0.96996 * 119.99943 * 180.02562 * 21 20 19 43 43 H 1.08997 * 109.46205 * 305.85839 * 23 12 11 44 44 H 1.09001 * 109.46187 * 65.82829 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 7 2.4351 -6.1035 0.0212 13 6 3.2053 -6.1436 -1.2285 14 6 4.2852 -7.2234 -1.1293 15 6 3.6219 -8.5795 -0.8729 16 6 2.7874 -8.4966 0.4081 17 1 3.4398 -8.2808 1.2542 18 6 2.0731 -9.8295 0.6407 19 6 3.1090 -10.9233 0.9081 20 6 2.4056 -12.2363 1.1365 21 7 3.1217 -13.3489 1.3930 22 8 1.1949 -12.2919 1.0896 23 6 1.7508 -7.3798 0.2644 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 2.8721 -3.6081 -0.8798 28 1 2.8721 -3.6002 0.9002 29 1 0.8536 -5.0411 0.9058 30 1 0.8541 -5.0485 -0.8741 31 1 2.5377 -6.3726 -2.0592 32 1 3.6751 -5.1745 -1.3968 33 1 4.9612 -6.9877 -0.3075 34 1 4.8470 -7.2637 -2.0625 35 1 4.3898 -9.3447 -0.7585 36 1 2.9756 -8.8336 -1.7130 37 1 1.4085 -9.7405 1.5000 38 1 1.4909 -10.0888 -0.2436 39 1 3.7736 -11.0122 0.0486 40 1 3.6912 -10.6640 1.7923 41 1 4.0900 -13.3044 1.4309 42 1 2.6690 -14.1940 1.5396 43 1 1.1643 -7.3086 1.1804 44 1 1.0902 -7.6031 -0.5733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170731320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:11 Heat of formation + Delta-G solvation = -101.394408 kcal Electronic energy + Delta-G solvation = -20286.523428 eV Core-core repulsion = 17235.830140 eV Total energy + Delta-G solvation = -3050.693288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.70277 -39.98218 -36.83727 -35.33583 -34.58956 -33.72035 -32.47429 -30.58847 -28.37185 -26.07682 -25.24455 -23.58462 -22.75641 -21.42902 -20.97157 -20.55812 -18.48830 -18.15753 -17.59433 -16.79152 -16.55824 -16.38316 -16.28121 -15.64604 -15.17163 -15.01925 -14.80326 -14.66050 -14.29135 -13.83262 -13.72966 -13.42219 -13.14613 -13.00292 -12.69362 -12.62235 -12.47279 -12.27615 -12.08558 -11.80651 -11.63737 -11.46027 -11.37389 -11.28732 -11.07658 -10.95187 -10.84405 -10.59385 -10.54382 -9.24456 -8.19818 -6.31367 1.39841 1.43673 1.51552 1.71603 2.41127 2.66955 3.00215 3.12885 3.76549 3.88798 3.93101 4.08634 4.17598 4.21580 4.32343 4.39027 4.48168 4.56870 4.59643 4.69900 4.71327 4.82569 4.84393 4.92106 4.97364 4.98738 5.03115 5.13001 5.16820 5.24107 5.27008 5.34268 5.46017 5.51582 5.60811 5.73812 5.85287 5.95442 6.12761 6.25818 6.28544 6.53926 6.85217 7.37787 7.42737 8.92054 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046298 B = 0.002693 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.635113 B =10395.578434 C =10749.918379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.086 4.086 11 C 0.066 3.934 12 N -0.540 5.540 13 C 0.046 3.954 14 C -0.110 4.110 15 C -0.113 4.113 16 C -0.073 4.073 17 H 0.086 0.914 18 C -0.094 4.094 19 C -0.134 4.134 20 C 0.509 3.491 21 N -0.841 5.841 22 O -0.602 6.602 23 C 0.056 3.944 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.013 1.013 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.018 0.982 31 H 0.022 0.978 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.419 0.581 42 H 0.403 0.597 43 H 0.066 0.934 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.688 -26.287 0.451 29.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.124 4.124 11 C -0.062 4.062 12 N -0.265 5.265 13 C -0.082 4.082 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.092 4.092 17 H 0.104 0.896 18 C -0.132 4.132 19 C -0.173 4.173 20 C 0.295 3.705 21 N -0.404 5.404 22 O -0.484 6.484 23 C -0.072 4.072 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.006 0.994 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.251 0.749 42 H 0.234 0.766 43 H 0.085 0.915 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 12.129 -25.958 0.765 28.662 hybrid contribution -0.768 0.719 -0.583 1.203 sum 11.361 -25.239 0.182 27.679 Atomic orbital electron populations 1.70099 1.07878 1.27859 1.51680 1.26035 0.95818 1.03534 0.94702 0.85463 0.78240 0.77845 0.79275 1.19048 1.20812 1.19058 1.21653 0.93542 0.92295 1.50559 0.92139 1.18978 0.94431 0.93273 0.94555 1.21376 0.97878 0.92496 1.00667 1.22007 0.93676 0.90903 0.99567 1.61962 1.26013 1.02946 1.35538 1.22237 0.96146 1.00468 0.89344 1.21567 0.96770 0.93723 1.02721 1.21705 0.99388 0.97345 0.96554 1.21126 0.96264 0.92265 0.99515 0.89614 1.21236 0.97333 0.92986 1.01673 1.21720 0.99261 0.90054 1.06292 1.21269 0.87189 0.87668 0.74352 1.43798 1.12200 1.10716 1.73698 1.90747 1.16906 1.87273 1.53437 1.22190 0.95914 0.89115 0.99956 0.92764 0.99131 0.99419 0.93098 0.92839 0.91721 0.96364 0.95980 0.91561 0.91020 0.90090 0.88725 0.92721 0.92808 0.92868 0.86021 0.86280 0.74924 0.76597 0.91509 0.96022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.44 13.29 21.45 0.28 -58.15 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.77 5.08 30.59 0.16 -3.61 16 11 C 0.07 2.48 4.96 86.30 0.43 2.91 16 12 N -0.54 -16.53 4.66 -896.35 -4.17 -20.70 16 13 C 0.05 1.25 5.29 86.33 0.46 1.71 16 14 C -0.11 -2.10 6.09 30.65 0.19 -1.92 16 15 C -0.11 -1.75 4.98 30.67 0.15 -1.60 16 16 C -0.07 -1.34 2.35 -10.74 -0.03 -1.37 16 17 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 18 C -0.09 -1.64 3.98 30.60 0.12 -1.52 16 19 C -0.13 -1.39 5.46 29.85 0.16 -1.23 16 20 C 0.51 7.89 8.10 87.66 0.71 8.60 16 21 N -0.84 -5.71 8.87 -173.54 -1.54 -7.25 16 22 O -0.60 -16.29 16.82 -3.04 -0.05 -16.34 16 23 C 0.06 1.46 4.74 86.33 0.41 1.87 16 24 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 27 H 0.05 2.16 6.43 -2.39 -0.02 2.15 16 28 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.06 2.44 7.99 -2.39 -0.02 2.42 16 30 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 2.00 6.21 -2.39 -0.01 1.98 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.09 0.89 6.70 -2.38 -0.02 0.87 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 1.13 8.10 -2.39 -0.02 1.12 16 38 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 39 H 0.12 0.66 6.63 -2.39 -0.02 0.64 16 40 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.42 -0.20 8.83 -92.71 -0.82 -1.02 16 42 H 0.40 2.52 8.93 -92.71 -0.83 1.69 16 43 H 0.07 1.79 8.01 -2.39 -0.02 1.77 16 44 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -75.89 346.60 -0.52 -76.42 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -0.67 Total: 4.90 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 3.60 Total: -26.03 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -5.43 Total: -86.10 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.05 Total: -16.34 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -75.89 -0.52 -76.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170731320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.978 kcal (2) G-P(sol) polarization free energy of solvation -75.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds