Wall clock time and date at job start Mon Mar 30 2020 01:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46848 * 110.99361 * 45.78870 * 12 11 10 14 14 C 1.53045 * 109.52212 * 185.84617 * 13 12 11 15 15 C 1.53126 * 109.27267 * 300.82193 * 14 13 12 16 16 C 1.53111 * 109.16377 * 57.65554 * 15 14 13 17 17 H 1.08998 * 109.50742 * 62.28519 * 16 15 14 18 18 C 1.52999 * 109.50761 * 182.40413 * 16 15 14 19 19 C 1.52998 * 109.46785 * 294.80640 * 18 16 15 20 20 C 1.50703 * 109.47130 * 179.97438 * 19 18 16 21 21 N 1.34774 * 119.99918 * 179.97438 * 20 19 18 22 22 O 1.21283 * 120.00003 * 359.97438 * 20 19 18 23 23 C 1.46844 * 111.00526 * 170.00090 * 12 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.09000 * 109.46861 * 305.85669 * 13 12 11 32 32 H 1.08996 * 109.46450 * 65.82852 * 13 12 11 33 33 H 1.08996 * 109.50378 * 180.88718 * 14 13 12 34 34 H 1.08993 * 109.50521 * 60.75626 * 14 13 12 35 35 H 1.09003 * 109.52363 * 297.74473 * 15 14 13 36 36 H 1.09000 * 109.51724 * 177.56060 * 15 14 13 37 37 H 1.08997 * 109.47017 * 54.80055 * 18 16 15 38 38 H 1.08995 * 109.47570 * 174.80236 * 18 16 15 39 39 H 1.09006 * 109.47399 * 299.99371 * 19 18 16 40 40 H 1.08995 * 109.47852 * 59.99770 * 19 18 16 41 41 H 0.96998 * 120.00470 * 0.02562 * 21 20 19 42 42 H 0.97005 * 119.99818 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.45873 * 294.17853 * 23 12 11 44 44 H 1.08996 * 109.45873 * 54.15658 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 3.5039 -5.8825 0.9825 14 6 4.5539 -6.9883 0.8531 15 6 3.8892 -8.3469 1.0918 16 6 2.7482 -8.5316 0.0877 17 1 3.1513 -8.5328 -0.9251 18 6 2.0399 -9.8606 0.3578 19 6 3.0041 -11.0169 0.0852 20 6 2.3067 -12.3260 0.3519 21 7 2.9658 -13.4885 0.1770 22 8 1.1524 -12.3334 0.7239 23 6 1.7505 -7.3810 0.2392 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 3.9711 -4.9149 0.7990 32 1 3.0827 -5.8974 1.9877 33 1 5.3394 -6.8326 1.5925 34 1 4.9854 -6.9652 -0.1476 35 1 3.4916 -8.3847 2.1061 36 1 4.6243 -9.1405 0.9580 37 1 1.7164 -9.8950 1.3981 38 1 1.1721 -9.9493 -0.2956 39 1 3.3277 -10.9826 -0.9552 40 1 3.8719 -10.9283 0.7387 41 1 3.8892 -13.4826 -0.1202 42 1 2.5171 -14.3311 0.3490 43 1 1.3375 -7.3889 1.2479 44 1 0.9444 -7.5019 -0.4843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170731325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:14 Heat of formation + Delta-G solvation = -74.182917 kcal Electronic energy + Delta-G solvation = -20320.152579 eV Core-core repulsion = 17270.639270 eV Total energy + Delta-G solvation = -3049.513309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.95235 -39.02335 -35.61729 -34.01345 -33.53716 -32.38863 -30.95715 -29.61287 -26.57523 -25.18035 -23.77059 -22.42146 -21.51746 -20.48136 -19.72256 -19.39836 -17.65502 -16.98292 -16.32077 -15.89518 -15.49995 -14.83557 -14.72049 -14.36143 -14.27621 -14.08154 -13.86793 -13.31838 -12.96384 -12.66348 -12.32612 -12.11958 -11.95409 -11.47726 -11.35786 -11.30652 -10.95307 -10.86824 -10.68717 -10.58758 -10.50465 -10.27201 -10.13894 -10.06862 -10.04321 -9.56838 -9.28952 -8.99136 -8.31698 -7.95085 -5.96782 -3.98756 2.33528 3.18782 3.32998 3.40243 3.44590 4.16252 4.48265 4.49333 4.63020 4.72251 4.91164 4.95363 5.04667 5.24974 5.38985 5.39631 5.52500 5.54805 5.61370 5.69366 5.74847 5.80102 5.89198 5.94580 5.97741 6.03762 6.18824 6.20665 6.29577 6.36038 6.39919 6.44474 6.75457 6.83486 6.94981 7.14036 7.48007 7.48773 7.71894 7.87045 7.92989 8.03866 8.47029 9.08684 9.65042 11.14716 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.051377 B = 0.002699 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.858267 B =10373.510044 C =10782.623312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.111 4.111 11 C 0.056 3.944 12 N -0.539 5.539 13 C 0.047 3.953 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.084 4.084 17 H 0.079 0.921 18 C -0.099 4.099 19 C -0.141 4.141 20 C 0.514 3.486 21 N -0.861 5.861 22 O -0.543 6.543 23 C 0.060 3.940 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.028 0.972 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.401 0.599 42 H 0.399 0.601 43 H 0.030 0.970 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.837 -25.126 0.486 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.149 4.149 11 C -0.071 4.071 12 N -0.263 5.263 13 C -0.081 4.081 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.102 4.102 17 H 0.097 0.903 18 C -0.138 4.138 19 C -0.181 4.181 20 C 0.299 3.701 21 N -0.425 5.425 22 O -0.419 6.419 23 C -0.068 4.068 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.229 0.771 42 H 0.229 0.771 43 H 0.048 0.952 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.148 -24.819 0.258 26.452 hybrid contribution 0.301 0.582 0.730 0.981 sum 9.449 -24.237 0.988 26.033 Atomic orbital electron populations 1.69980 1.06051 1.26411 1.51117 1.25040 0.94855 0.99271 0.95452 0.86545 0.80119 0.83853 0.77535 1.19746 1.21029 1.21074 1.21287 0.93039 0.91048 1.50164 0.92667 1.19080 0.94043 0.91381 0.97143 1.21785 0.99310 0.93122 1.00681 1.22275 0.94047 0.90562 1.00206 1.62018 1.12823 1.02028 1.49455 1.22213 0.92980 0.99590 0.93274 1.21600 0.97524 0.94239 1.02086 1.21697 0.97371 0.97352 0.98988 1.21207 0.95642 0.93178 1.00218 0.90252 1.21361 0.97592 0.91779 1.03043 1.21740 1.00357 0.91977 1.04069 1.20906 0.86794 0.86345 0.76010 1.43956 1.17497 1.08737 1.72279 1.90764 1.17524 1.87845 1.45777 1.22067 0.95859 0.89288 0.99574 0.93109 0.96820 0.96553 0.92583 0.93193 0.95436 0.91116 0.89451 0.95378 0.91910 0.91237 0.92351 0.92157 0.91267 0.91023 0.88682 0.88625 0.77093 0.77075 0.95191 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.35 4.40 -26.74 -0.12 -2.47 16 11 C 0.06 1.02 5.27 -3.83 -0.02 1.00 16 12 N -0.54 -8.31 4.81 -234.67 -1.13 -9.44 16 13 C 0.05 0.68 4.85 -3.83 -0.02 0.66 16 14 C -0.12 -1.29 6.09 -26.64 -0.16 -1.45 16 15 C -0.12 -1.11 4.98 -26.61 -0.13 -1.24 16 16 C -0.08 -0.85 2.35 -90.54 -0.21 -1.06 16 17 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 18 C -0.10 -0.94 3.97 -26.73 -0.11 -1.04 16 19 C -0.14 -0.95 5.46 -27.88 -0.15 -1.10 16 20 C 0.51 4.43 8.10 -10.99 -0.09 4.34 16 21 N -0.86 -4.00 8.87 31.22 0.28 -3.73 16 22 O -0.54 -7.34 16.82 5.55 0.09 -7.25 16 23 C 0.06 0.79 4.71 -3.83 -0.02 0.77 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.05 1.03 6.21 -51.93 -0.32 0.71 16 29 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.36 5.81 -51.93 -0.30 1.06 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.45 6.70 -51.93 -0.35 0.10 16 37 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.49 6.63 -51.93 -0.34 0.15 16 41 H 0.40 0.61 8.83 -40.82 -0.36 0.25 16 42 H 0.40 1.63 8.93 -40.82 -0.36 1.27 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.95 8.12 -51.93 -0.42 0.52 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -33.87 345.50 -9.33 -43.20 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -7.92 Total: -3.37 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.58 Total: -14.90 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.11 Total: -39.82 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.09 Total: -7.25 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.87 -9.33 -43.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170731325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.983 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds