Wall clock time and date at job start Mon Mar 30 2020 01:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46848 * 110.99361 * 45.78870 * 12 11 10 14 14 C 1.53045 * 109.52212 * 185.84617 * 13 12 11 15 15 C 1.53126 * 109.27267 * 300.82193 * 14 13 12 16 16 C 1.53111 * 109.16377 * 57.65554 * 15 14 13 17 17 H 1.08998 * 109.50742 * 62.28519 * 16 15 14 18 18 C 1.52999 * 109.50761 * 182.40413 * 16 15 14 19 19 C 1.52998 * 109.46785 * 294.80640 * 18 16 15 20 20 C 1.50703 * 109.47130 * 179.97438 * 19 18 16 21 21 N 1.34774 * 119.99918 * 179.97438 * 20 19 18 22 22 O 1.21283 * 120.00003 * 359.97438 * 20 19 18 23 23 C 1.46844 * 111.00526 * 170.00090 * 12 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.09000 * 109.46861 * 305.85669 * 13 12 11 32 32 H 1.08996 * 109.46450 * 65.82852 * 13 12 11 33 33 H 1.08996 * 109.50378 * 180.88718 * 14 13 12 34 34 H 1.08993 * 109.50521 * 60.75626 * 14 13 12 35 35 H 1.09003 * 109.52363 * 297.74473 * 15 14 13 36 36 H 1.09000 * 109.51724 * 177.56060 * 15 14 13 37 37 H 1.08997 * 109.47017 * 54.80055 * 18 16 15 38 38 H 1.08995 * 109.47570 * 174.80236 * 18 16 15 39 39 H 1.09006 * 109.47399 * 299.99371 * 19 18 16 40 40 H 1.08995 * 109.47852 * 59.99770 * 19 18 16 41 41 H 0.96998 * 120.00470 * 0.02562 * 21 20 19 42 42 H 0.97005 * 119.99818 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.45873 * 294.17853 * 23 12 11 44 44 H 1.08996 * 109.45873 * 54.15658 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 3.5039 -5.8825 0.9825 14 6 4.5539 -6.9883 0.8531 15 6 3.8892 -8.3469 1.0918 16 6 2.7482 -8.5316 0.0877 17 1 3.1513 -8.5328 -0.9251 18 6 2.0399 -9.8606 0.3578 19 6 3.0041 -11.0169 0.0852 20 6 2.3067 -12.3260 0.3519 21 7 2.9658 -13.4885 0.1770 22 8 1.1524 -12.3334 0.7239 23 6 1.7505 -7.3810 0.2392 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 3.9711 -4.9149 0.7990 32 1 3.0827 -5.8974 1.9877 33 1 5.3394 -6.8326 1.5925 34 1 4.9854 -6.9652 -0.1476 35 1 3.4916 -8.3847 2.1061 36 1 4.6243 -9.1405 0.9580 37 1 1.7164 -9.8950 1.3981 38 1 1.1721 -9.9493 -0.2956 39 1 3.3277 -10.9826 -0.9552 40 1 3.8719 -10.9283 0.7387 41 1 3.8892 -13.4826 -0.1202 42 1 2.5171 -14.3311 0.3490 43 1 1.3375 -7.3889 1.2479 44 1 0.9444 -7.5019 -0.4843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170731325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:14 Heat of formation + Delta-G solvation = -98.911199 kcal Electronic energy + Delta-G solvation = -20321.224878 eV Core-core repulsion = 17270.639270 eV Total energy + Delta-G solvation = -3050.585608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71705 -40.02197 -36.90093 -35.32276 -34.59006 -33.67708 -32.50484 -30.58374 -28.33617 -26.18743 -25.23003 -23.57999 -22.91821 -21.33545 -20.83796 -20.58067 -18.51129 -18.15917 -17.59645 -16.83858 -16.56366 -16.37251 -16.22126 -15.79072 -15.14742 -15.00043 -14.83624 -14.63404 -14.30618 -13.77262 -13.74497 -13.45107 -13.16689 -13.03392 -12.71027 -12.66621 -12.44682 -12.25271 -12.06469 -11.80540 -11.66493 -11.43620 -11.37779 -11.26048 -11.04406 -10.95735 -10.85262 -10.59400 -10.56234 -9.23850 -8.20853 -6.32226 1.39564 1.40204 1.53840 1.71600 2.40408 2.67016 3.01113 3.12138 3.76342 3.90038 3.92982 4.09215 4.16612 4.23705 4.30448 4.35751 4.48315 4.57094 4.59988 4.67391 4.69792 4.82442 4.84106 4.91961 4.96755 4.98982 5.04269 5.14763 5.15459 5.23553 5.26541 5.34127 5.46169 5.50201 5.60605 5.72083 5.83771 5.95402 6.12033 6.24200 6.27982 6.53974 6.84744 7.37055 7.42750 8.91469 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.051377 B = 0.002699 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.858267 B =10373.510044 C =10782.623312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.065 3.935 12 N -0.539 5.539 13 C 0.042 3.958 14 C -0.110 4.110 15 C -0.113 4.113 16 C -0.072 4.072 17 H 0.087 0.913 18 C -0.094 4.094 19 C -0.134 4.134 20 C 0.509 3.491 21 N -0.841 5.841 22 O -0.603 6.603 23 C 0.056 3.944 24 H 0.264 0.736 25 H -0.013 1.013 26 H -0.009 1.009 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.017 0.983 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.019 0.981 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.419 0.581 42 H 0.403 0.597 43 H 0.020 0.980 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.775 -26.229 0.203 29.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.063 4.063 12 N -0.263 5.263 13 C -0.086 4.086 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.091 4.091 17 H 0.105 0.895 18 C -0.132 4.132 19 C -0.173 4.173 20 C 0.295 3.705 21 N -0.404 5.404 22 O -0.484 6.484 23 C -0.072 4.072 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.009 0.991 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.251 0.749 42 H 0.234 0.766 43 H 0.038 0.962 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.149 -25.967 -0.039 28.669 hybrid contribution -0.640 0.879 0.817 1.360 sum 11.509 -25.088 0.778 27.613 Atomic orbital electron populations 1.70115 1.07887 1.27730 1.51797 1.26042 0.95823 1.03567 0.94739 0.85352 0.79095 0.78514 0.77799 1.18420 1.20294 1.20352 1.21703 0.93544 0.92239 1.50338 0.92096 1.18986 0.94433 0.93281 0.94603 1.21520 0.98055 0.92681 1.00813 1.22030 0.94127 0.90527 0.99568 1.62039 1.12372 1.01797 1.50090 1.22303 0.93350 1.00529 0.92400 1.21581 0.96735 0.93614 1.02889 1.21710 0.97549 0.97495 0.98294 1.21121 0.95055 0.91919 1.01010 0.89457 1.21234 0.97794 0.92627 1.01589 1.21720 0.99881 0.89556 1.06153 1.21273 0.86150 0.87818 0.75245 1.43800 1.18225 1.07917 1.70469 1.90748 1.20119 1.88683 1.48825 1.22195 0.96813 0.89340 0.98859 0.92771 0.99444 0.99061 0.92614 0.92680 0.96434 0.91581 0.91019 0.96252 0.90192 0.90883 0.92874 0.88695 0.92970 0.92749 0.86201 0.86058 0.74919 0.76597 0.96182 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.33 13.29 21.45 0.28 -58.05 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.64 9.11 25.60 0.23 -31.40 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.35 4.97 29.85 0.15 1.50 16 10 C -0.09 -4.02 4.40 30.59 0.13 -3.89 16 11 C 0.07 2.44 5.27 86.30 0.46 2.90 16 12 N -0.54 -16.52 4.81 -896.36 -4.31 -20.83 16 13 C 0.04 1.17 4.85 86.33 0.42 1.59 16 14 C -0.11 -2.15 6.09 30.65 0.19 -1.96 16 15 C -0.11 -1.80 4.98 30.67 0.15 -1.64 16 16 C -0.07 -1.33 2.35 -10.74 -0.03 -1.36 16 17 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 18 C -0.09 -1.65 3.97 30.59 0.12 -1.53 16 19 C -0.13 -1.38 5.46 29.85 0.16 -1.22 16 20 C 0.51 7.89 8.10 87.66 0.71 8.60 16 21 N -0.84 -5.70 8.87 -173.53 -1.54 -7.24 16 22 O -0.60 -16.32 16.82 -3.04 -0.05 -16.37 16 23 C 0.06 1.46 4.71 86.33 0.41 1.86 16 24 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 25 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 2.31 6.21 -2.39 -0.01 2.30 16 29 H 0.02 0.68 8.08 -2.39 -0.02 0.66 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.07 2.20 5.81 -2.39 -0.01 2.19 16 32 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 0.91 6.70 -2.39 -0.02 0.90 16 37 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 39 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.12 0.67 6.63 -2.39 -0.02 0.65 16 41 H 0.42 -0.21 8.83 -92.71 -0.82 -1.03 16 42 H 0.40 2.51 8.93 -92.70 -0.83 1.69 16 43 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 1.80 8.12 -2.39 -0.02 1.79 16 Total: -1.00 -75.81 345.50 -0.69 -76.50 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -0.67 Total: 5.23 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.57 Total: -26.35 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -5.56 Total: -86.11 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.05 Total: -16.37 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.81 -0.69 -76.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170731325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.406 kcal (2) G-P(sol) polarization free energy of solvation -75.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds