Wall clock time and date at job start Mon Mar 30 2020 01:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00376 * 180.02562 * 12 11 10 14 14 O 1.21591 * 119.99538 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00462 * 180.02562 * 13 12 11 16 16 C 1.46970 * 120.36094 * 359.71835 * 15 13 12 17 17 C 1.52838 * 108.83421 * 68.62445 * 16 15 13 18 18 C 1.53800 * 109.25588 * 72.59936 * 17 16 15 19 19 C 1.52447 * 109.40363 * 282.12915 * 18 17 16 20 20 C 1.53954 * 110.73688 * 113.72476 * 19 18 17 21 21 C 1.52879 * 109.72831 * 315.63534 * 20 19 18 22 22 C 1.45332 * 120.36987 * 179.97438 * 15 13 12 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 25 25 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 28 28 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 29 29 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 30 30 H 0.97004 * 119.99396 * 0.02562 * 12 11 10 31 31 H 1.08993 * 109.53032 * 188.26920 * 16 15 13 32 32 H 1.09000 * 109.53384 * 308.50075 * 16 15 13 33 33 H 1.09005 * 109.51369 * 312.64575 * 17 16 15 34 34 H 1.08994 * 109.44483 * 192.51102 * 17 16 15 35 35 H 1.09001 * 109.48782 * 162.14519 * 18 17 16 36 36 H 1.09000 * 109.48164 * 42.09950 * 18 17 16 37 37 H 1.09003 * 109.22638 * 353.39783 * 19 18 17 38 38 H 1.09005 * 109.18681 * 234.02673 * 19 18 17 39 39 H 1.08994 * 109.42726 * 195.55211 * 20 19 18 40 40 H 1.08998 * 109.42725 * 75.71071 * 20 19 18 41 41 H 1.08992 * 109.48491 * 167.12969 * 21 20 19 42 42 H 1.08997 * 109.48639 * 47.07557 * 21 20 19 43 43 H 1.09004 * 109.67418 * 343.05008 * 22 15 13 44 44 H 1.08998 * 109.67218 * 103.55243 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 1.9832 -7.3713 0.0019 14 8 0.7878 -7.5935 0.0010 15 7 2.8590 -8.3957 0.0030 16 6 4.3056 -8.1363 -0.0022 17 6 4.7021 -7.5255 1.3416 18 6 4.6498 -8.6127 2.4281 19 6 3.2000 -8.8557 2.8320 20 6 2.7504 -10.2706 2.4244 21 6 3.2248 -10.5733 1.0029 22 6 2.3833 -9.7690 0.0037 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8902 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8905 28 1 0.8540 -5.0446 0.8914 29 1 0.8534 -5.0452 -0.8885 30 1 3.3861 -5.9233 0.0021 31 1 4.8432 -9.0731 -0.1481 32 1 4.5491 -7.4454 -0.8093 33 1 4.0093 -6.7231 1.5954 34 1 5.7141 -7.1264 1.2742 35 1 5.2195 -8.2853 3.2979 36 1 5.0784 -9.5363 2.0392 37 1 2.5624 -8.1209 2.3404 38 1 3.1060 -8.7465 3.9125 39 1 1.6629 -10.3310 2.4644 40 1 3.1788 -10.9994 3.1125 41 1 3.1104 -11.6381 0.8006 42 1 4.2737 -10.2945 0.9025 43 1 1.3354 -9.7943 0.3024 44 1 2.4910 -10.1951 -0.9938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170887268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:06 Heat of formation + Delta-G solvation = -46.381615 kcal Electronic energy + Delta-G solvation = -21346.586010 eV Core-core repulsion = 18298.278256 eV Total energy + Delta-G solvation = -3048.307754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67991 -37.89643 -35.48256 -34.29652 -33.64536 -32.87897 -31.00701 -28.58249 -26.89914 -26.22262 -23.68371 -22.45203 -22.43513 -20.58450 -20.06831 -19.21092 -17.65806 -16.81436 -16.29316 -16.06733 -15.11941 -14.96143 -14.50181 -14.35541 -14.13803 -13.96545 -13.89980 -13.51642 -13.03377 -12.33939 -12.27895 -12.01327 -11.80473 -11.72622 -11.68187 -11.27039 -11.23882 -10.87484 -10.76758 -10.68621 -10.68565 -10.60021 -10.41878 -9.99634 -9.83076 -9.41014 -9.11617 -8.81302 -8.35660 -8.34405 -5.99952 -4.03110 2.81023 3.32964 3.37701 3.39567 3.40224 4.08167 4.43922 4.46327 4.61819 4.68829 4.77473 4.81499 4.97575 5.16982 5.22379 5.35621 5.37354 5.42410 5.54795 5.56188 5.66469 5.73562 5.74734 5.84235 5.85156 5.89048 5.98417 6.09374 6.11239 6.22181 6.31367 6.51222 6.60825 6.65438 6.87746 7.05751 7.11463 7.65705 7.79123 7.98984 8.13758 8.39958 8.81614 9.03393 9.60834 11.11323 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033417 B = 0.003509 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.699149 B = 7978.546778 C = 8309.971525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.133 3.867 12 N -0.742 5.742 13 C 0.704 3.296 14 O -0.594 6.594 15 N -0.627 5.627 16 C 0.106 3.894 17 C -0.153 4.153 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.147 4.147 22 C 0.129 3.871 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.394 0.606 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.300 -21.472 2.606 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.010 3.990 12 N -0.398 5.398 13 C 0.405 3.595 14 O -0.472 6.472 15 N -0.365 5.365 16 C -0.017 4.017 17 C -0.191 4.191 18 C -0.156 4.156 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.184 4.184 22 C 0.006 3.994 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.229 0.771 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.223 -21.492 2.599 23.942 hybrid contribution 0.948 1.067 0.021 1.428 sum 11.171 -20.425 2.621 23.428 Atomic orbital electron populations 1.69955 1.06054 1.26781 1.50490 1.25026 0.94850 0.99264 0.95298 0.86647 0.79563 0.83135 0.78568 1.20258 1.21279 1.20254 1.21170 0.92936 0.90971 1.51023 0.92724 1.19019 0.93844 0.90778 0.97677 1.21881 0.99769 0.93404 1.00717 1.21504 0.91406 0.84296 1.01830 1.45625 1.10504 1.04498 1.79126 1.15907 0.84920 0.80796 0.77846 1.90903 1.14028 1.83874 1.58390 1.46981 1.05331 1.05429 1.78783 1.21682 0.81321 1.01580 0.97100 1.22404 1.02276 0.99081 0.95361 1.21727 0.96975 0.98638 0.98224 1.21734 0.96454 0.97527 1.00399 1.21699 1.00976 0.96718 0.95825 1.22321 1.01021 0.99697 0.95393 1.21272 1.00016 0.80006 0.98145 0.92876 0.96260 0.96253 0.92848 0.92860 0.92024 0.92029 0.77061 0.89391 0.91336 0.90503 0.90694 0.92216 0.91263 0.91318 0.92718 0.91868 0.92433 0.91175 0.90206 0.89154 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.13 2.44 5.67 -4.04 -0.02 2.42 16 12 N -0.74 -11.34 4.74 -65.23 -0.31 -11.65 16 13 C 0.70 11.24 6.75 -86.92 -0.59 10.65 16 14 O -0.59 -11.98 15.78 5.29 0.08 -11.90 16 15 N -0.63 -7.32 1.67 -179.82 -0.30 -7.62 16 16 C 0.11 0.90 4.98 -3.87 -0.02 0.88 16 17 C -0.15 -1.29 5.18 -26.40 -0.14 -1.43 16 18 C -0.12 -0.97 5.49 -26.60 -0.15 -1.11 16 19 C -0.12 -1.24 5.40 -26.52 -0.14 -1.38 16 20 C -0.11 -1.01 5.75 -26.30 -0.15 -1.16 16 21 C -0.15 -1.12 5.45 -26.58 -0.14 -1.27 16 22 C 0.13 1.34 6.01 -4.46 -0.03 1.31 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.39 5.04 5.53 -40.82 -0.23 4.81 16 31 H 0.09 0.57 6.07 -51.93 -0.32 0.25 16 32 H 0.07 0.56 7.61 -51.93 -0.40 0.16 16 33 H 0.08 0.83 5.64 -51.93 -0.29 0.53 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.48 5.48 -51.93 -0.28 0.20 16 37 H 0.07 0.89 5.38 -51.93 -0.28 0.61 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.62 7.87 -51.93 -0.41 0.22 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.54 3.35 -51.93 -0.17 0.37 16 43 H 0.09 1.14 6.79 -51.93 -0.35 0.79 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -32.52 329.31 -9.26 -41.78 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.34 Total: 0.72 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.07 Total: -6.58 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.13 Total: -45.53 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.52 -9.26 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.597 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds