Wall clock time and date at job start Mon Mar 30 2020 01:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00376 * 180.02562 * 12 11 10 14 14 O 1.21591 * 119.99538 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00462 * 180.02562 * 13 12 11 16 16 C 1.46970 * 120.36094 * 359.71835 * 15 13 12 17 17 C 1.52838 * 108.83421 * 68.62445 * 16 15 13 18 18 C 1.53800 * 109.25588 * 72.59936 * 17 16 15 19 19 C 1.52447 * 109.40363 * 282.12915 * 18 17 16 20 20 C 1.53954 * 110.73688 * 113.72476 * 19 18 17 21 21 C 1.52879 * 109.72831 * 315.63534 * 20 19 18 22 22 C 1.45332 * 120.36987 * 179.97438 * 15 13 12 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 25 25 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 28 28 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 29 29 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 30 30 H 0.97004 * 119.99396 * 0.02562 * 12 11 10 31 31 H 1.08993 * 109.53032 * 188.26920 * 16 15 13 32 32 H 1.09000 * 109.53384 * 308.50075 * 16 15 13 33 33 H 1.09005 * 109.51369 * 312.64575 * 17 16 15 34 34 H 1.08994 * 109.44483 * 192.51102 * 17 16 15 35 35 H 1.09001 * 109.48782 * 162.14519 * 18 17 16 36 36 H 1.09000 * 109.48164 * 42.09950 * 18 17 16 37 37 H 1.09003 * 109.22638 * 353.39783 * 19 18 17 38 38 H 1.09005 * 109.18681 * 234.02673 * 19 18 17 39 39 H 1.08994 * 109.42726 * 195.55211 * 20 19 18 40 40 H 1.08998 * 109.42725 * 75.71071 * 20 19 18 41 41 H 1.08992 * 109.48491 * 167.12969 * 21 20 19 42 42 H 1.08997 * 109.48639 * 47.07557 * 21 20 19 43 43 H 1.09004 * 109.67418 * 343.05008 * 22 15 13 44 44 H 1.08998 * 109.67218 * 103.55243 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 1.9832 -7.3713 0.0019 14 8 0.7878 -7.5935 0.0010 15 7 2.8590 -8.3957 0.0030 16 6 4.3056 -8.1363 -0.0022 17 6 4.7021 -7.5255 1.3416 18 6 4.6498 -8.6127 2.4281 19 6 3.2000 -8.8557 2.8320 20 6 2.7504 -10.2706 2.4244 21 6 3.2248 -10.5733 1.0029 22 6 2.3833 -9.7690 0.0037 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8902 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8905 28 1 0.8540 -5.0446 0.8914 29 1 0.8534 -5.0452 -0.8885 30 1 3.3861 -5.9233 0.0021 31 1 4.8432 -9.0731 -0.1481 32 1 4.5491 -7.4454 -0.8093 33 1 4.0093 -6.7231 1.5954 34 1 5.7141 -7.1264 1.2742 35 1 5.2195 -8.2853 3.2979 36 1 5.0784 -9.5363 2.0392 37 1 2.5624 -8.1209 2.3404 38 1 3.1060 -8.7465 3.9125 39 1 1.6629 -10.3310 2.4644 40 1 3.1788 -10.9994 3.1125 41 1 3.1104 -11.6381 0.8006 42 1 4.2737 -10.2945 0.9025 43 1 1.3354 -9.7943 0.3024 44 1 2.4910 -10.1951 -0.9938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170887268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:06 Heat of formation + Delta-G solvation = -65.802221 kcal Electronic energy + Delta-G solvation = -21347.428151 eV Core-core repulsion = 18298.278256 eV Total energy + Delta-G solvation = -3049.149895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73504 -38.92960 -37.02842 -35.44251 -35.04144 -34.06619 -32.72887 -29.57648 -28.37946 -27.23948 -25.20507 -23.73157 -23.15633 -22.27764 -21.11272 -20.20002 -18.79043 -18.42736 -17.72399 -17.07978 -16.53644 -16.34802 -16.03935 -15.35835 -15.30898 -15.16880 -14.74401 -14.31408 -14.25612 -14.02616 -13.73439 -13.45415 -13.05187 -12.82487 -12.71216 -12.56277 -12.51830 -12.37429 -11.94849 -11.93035 -11.67920 -11.61145 -11.49528 -11.42896 -11.28731 -11.13255 -11.08711 -10.54600 -10.15750 -9.34580 -8.18826 -6.30780 1.41904 1.45402 1.53165 1.71774 2.14965 2.42459 3.01128 3.14724 3.73182 3.91999 3.99136 4.08180 4.14535 4.15039 4.20777 4.26220 4.50973 4.53019 4.54536 4.67536 4.71000 4.80065 4.86512 4.93930 4.96728 5.02977 5.05470 5.14881 5.15673 5.19098 5.26269 5.38707 5.41945 5.47361 5.53936 5.58307 5.68347 5.70033 5.83800 6.02169 6.22438 6.85956 6.99515 7.38779 7.58726 8.93251 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033417 B = 0.003509 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.699149 B = 7978.546778 C = 8309.971525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.025 3.975 10 C -0.098 4.098 11 C 0.148 3.852 12 N -0.731 5.731 13 C 0.699 3.301 14 O -0.645 6.645 15 N -0.616 5.616 16 C 0.100 3.900 17 C -0.151 4.151 18 C -0.114 4.114 19 C -0.125 4.125 20 C -0.115 4.115 21 C -0.135 4.135 22 C 0.123 3.877 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.009 1.009 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.409 0.591 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.032 0.968 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.985 -22.428 2.434 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.013 4.013 10 C -0.136 4.136 11 C 0.023 3.977 12 N -0.388 5.388 13 C 0.400 3.600 14 O -0.527 6.527 15 N -0.353 5.353 16 C -0.022 4.022 17 C -0.190 4.190 18 C -0.151 4.151 19 C -0.163 4.163 20 C -0.153 4.153 21 C -0.172 4.172 22 C 0.000 4.000 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.247 0.753 31 H 0.138 0.862 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.985 -22.486 2.429 26.591 hybrid contribution -0.232 1.298 0.103 1.322 sum 13.753 -21.188 2.532 25.387 Atomic orbital electron populations 1.70111 1.08012 1.27880 1.51605 1.26045 0.95745 1.03621 0.94726 0.85449 0.78172 0.77788 0.79319 1.18926 1.21201 1.18956 1.21646 0.93768 0.91923 1.50624 0.91427 1.18930 0.94409 0.92962 0.95016 1.21573 0.98415 0.91644 1.02003 1.21060 0.91471 0.84938 1.00184 1.45275 1.10653 1.03702 1.79167 1.16109 0.84781 0.81483 0.77616 1.90864 1.16552 1.84639 1.60646 1.47049 1.06357 1.04835 1.77043 1.22017 0.79064 1.03590 0.97501 1.22390 1.02893 0.98452 0.95257 1.21721 0.95340 0.99527 0.98495 1.21740 0.97468 0.97391 0.99730 1.21706 0.99864 0.96394 0.97289 1.22278 1.01118 1.00432 0.93359 1.21440 0.99023 0.79662 0.99916 0.92807 0.98993 0.99076 0.91343 0.91498 0.93924 0.93696 0.75278 0.86192 0.90452 0.93193 0.88227 0.91664 0.89066 0.94907 0.93315 0.93996 0.90471 0.88884 0.88335 0.92319 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.29 21.45 0.28 -57.59 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 11 C 0.15 5.66 5.67 86.38 0.49 6.15 16 12 N -0.73 -22.46 4.74 -478.54 -2.27 -24.73 16 13 C 0.70 22.77 6.75 179.06 1.21 23.98 16 14 O -0.64 -27.47 15.78 -4.00 -0.06 -27.53 16 15 N -0.62 -13.75 1.67 -841.08 -1.41 -15.15 16 16 C 0.10 1.38 4.98 86.24 0.43 1.81 16 17 C -0.15 -2.14 5.18 30.81 0.16 -1.98 16 18 C -0.11 -1.53 5.49 30.68 0.17 -1.36 16 19 C -0.13 -2.43 5.40 30.73 0.17 -2.26 16 20 C -0.12 -1.86 5.75 30.88 0.18 -1.68 16 21 C -0.13 -1.67 5.45 30.69 0.17 -1.51 16 22 C 0.12 2.40 6.01 86.74 0.52 2.92 16 23 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 24 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.41 9.96 5.53 -92.71 -0.51 9.45 16 31 H 0.12 0.95 6.07 -2.39 -0.01 0.93 16 32 H 0.08 0.99 7.61 -2.39 -0.02 0.97 16 33 H 0.05 1.01 5.64 -2.38 -0.01 0.99 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 0.84 5.48 -2.39 -0.01 0.83 16 37 H 0.03 0.87 5.38 -2.39 -0.01 0.86 16 38 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.04 0.85 7.87 -2.39 -0.02 0.83 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 0.87 3.35 -2.39 -0.01 0.87 16 43 H 0.06 1.54 6.79 -2.39 -0.02 1.53 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -73.95 329.31 3.53 -70.42 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.47 Total: 14.90 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 4.49 Total: -6.33 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -3.39 Total: -97.46 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.06 Total: -27.53 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -73.95 3.53 -70.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.615 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds