Wall clock time and date at job start Mon Mar 30 2020 01:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99883 * 2 1 4 4 H 1.48499 * 109.47058 * 270.00079 * 3 2 1 5 5 H 1.48499 * 109.47179 * 29.99754 * 3 2 1 6 6 H 1.48500 * 109.47468 * 149.99739 * 3 2 1 7 7 C 1.37876 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00199 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47207 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47290 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46974 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99869 * 180.02562 * 12 11 10 14 14 O 1.21589 * 120.00097 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00046 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99965 * 180.02562 * 15 13 12 17 17 C 1.54065 * 108.87405 * 277.96907 * 16 15 13 18 18 C 1.54066 * 112.81762 * 197.50625 * 17 16 15 19 19 C 1.50470 * 112.49875 * 318.28617 * 18 17 16 20 20 C 1.54246 * 108.51998 * 94.14981 * 19 18 17 21 21 C 1.45537 * 112.40731 * 280.01038 * 20 19 18 22 22 C 1.50473 * 108.87630 * 154.99590 * 16 15 13 23 23 H 0.96997 * 120.00149 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47736 * 59.99602 * 9 7 2 25 25 H 1.09005 * 109.47150 * 299.99560 * 9 7 2 26 26 H 1.09007 * 109.46710 * 60.00113 * 10 9 7 27 27 H 1.08991 * 109.47376 * 300.00466 * 10 9 7 28 28 H 1.08992 * 109.47284 * 60.00125 * 11 10 9 29 29 H 1.09005 * 109.47314 * 300.00071 * 11 10 9 30 30 H 0.96996 * 120.00276 * 359.97438 * 12 11 10 31 31 H 0.96996 * 120.00099 * 359.97438 * 15 13 12 32 32 H 1.08996 * 108.77304 * 36.48071 * 16 15 13 33 33 H 1.09005 * 108.81720 * 318.37164 * 17 16 15 34 34 H 1.09004 * 108.81387 * 76.75411 * 17 16 15 35 35 H 1.08997 * 108.87949 * 197.51000 * 18 17 16 36 36 H 1.09001 * 108.87760 * 79.06417 * 18 17 16 37 37 H 1.09003 * 109.63195 * 334.43897 * 19 18 17 38 38 H 1.09001 * 109.62960 * 213.85940 * 19 18 17 39 39 H 1.09001 * 108.89247 * 40.76541 * 20 19 18 40 40 H 1.09004 * 108.89281 * 159.35535 * 20 19 18 41 41 H 1.09000 * 108.89458 * 182.68905 * 21 20 19 42 42 H 1.08998 * 108.89747 * 301.18352 * 21 20 19 43 43 H 1.09006 * 109.62936 * 95.21532 * 22 16 15 44 44 H 1.08998 * 109.78811 * 334.73047 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4324 -6.1005 0.0018 13 6 1.9832 -7.3712 0.0019 14 8 0.7878 -7.5935 0.0020 15 7 2.8590 -8.3956 0.0030 16 6 2.3707 -9.7769 0.0025 17 6 2.0123 -10.1793 1.4459 18 6 1.9028 -11.7048 1.6311 19 6 1.1931 -12.3744 0.4856 20 6 2.2493 -12.8614 -0.5276 21 6 2.7266 -11.7902 -1.3895 22 6 3.4256 -10.6660 -0.5980 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8720 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8893 28 1 0.8535 -5.0451 -0.8885 29 1 0.8540 -5.0446 0.8914 30 1 3.3860 -5.9233 0.0014 31 1 3.8126 -8.2184 0.0033 32 1 1.4721 -9.8311 -0.6120 33 1 2.7808 -9.7978 2.1183 34 1 1.0574 -9.7251 1.7107 35 1 1.3572 -11.9100 2.5522 36 1 2.9058 -12.1226 1.7172 37 1 0.5237 -11.6623 0.0030 38 1 0.6215 -13.2254 0.8562 39 1 3.0955 -13.2790 0.0180 40 1 1.8096 -13.6424 -1.1479 41 1 3.4309 -12.2048 -2.1107 42 1 1.8792 -11.3675 -1.9293 43 1 4.0335 -11.1005 0.1957 44 1 4.0594 -10.0857 -1.2685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170887285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:27 Heat of formation + Delta-G solvation = -69.322345 kcal Electronic energy + Delta-G solvation = -20328.957982 eV Core-core repulsion = 17279.655444 eV Total energy + Delta-G solvation = -3049.302539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.22341 -38.68124 -35.50216 -34.51400 -33.27465 -32.58466 -31.41998 -30.11499 -26.61003 -25.19430 -24.35100 -22.87744 -21.14038 -20.69287 -20.27676 -19.59335 -17.92512 -16.79769 -16.25886 -15.75576 -15.20473 -14.99417 -14.69335 -14.43702 -14.17251 -13.88803 -13.83183 -13.68833 -13.31421 -12.48911 -12.28242 -12.20103 -11.79632 -11.74467 -11.60348 -11.21914 -10.99410 -10.88975 -10.69912 -10.65769 -10.64370 -10.57654 -10.48101 -10.01316 -9.83420 -9.41373 -9.10784 -9.09560 -8.54467 -8.35795 -6.00409 -4.03453 2.88244 3.31566 3.37878 3.40710 3.43745 4.29736 4.33776 4.44989 4.50180 4.70351 4.82911 4.88048 4.96924 5.09624 5.16227 5.26061 5.35283 5.48532 5.57046 5.67956 5.72192 5.77999 5.81800 5.84807 5.88798 5.93733 6.01112 6.06560 6.14606 6.21960 6.23466 6.57933 6.59537 6.65521 6.85834 7.05498 7.14690 7.65691 7.78846 7.98745 8.22435 8.39726 8.83015 9.03340 9.60573 11.10930 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.055672 B = 0.002576 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.821954 B =10865.627659 C =11015.833865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.743 5.743 13 C 0.699 3.301 14 O -0.593 6.593 15 N -0.751 5.751 16 C 0.167 3.833 17 C -0.130 4.130 18 C -0.114 4.114 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.126 4.126 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.393 0.607 31 H 0.392 0.608 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.457 -25.677 0.106 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.397 5.397 13 C 0.398 3.602 14 O -0.471 6.471 15 N -0.406 5.406 16 C 0.062 3.938 17 C -0.169 4.169 18 C -0.152 4.152 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.164 4.164 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.226 0.774 31 H 0.226 0.774 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.159 -25.732 0.107 26.710 hybrid contribution 1.346 1.209 0.054 1.810 sum 8.505 -24.524 0.160 25.957 Atomic orbital electron populations 1.69966 1.06055 1.26672 1.50596 1.25033 0.94859 0.99297 0.95317 0.86581 0.79788 0.83456 0.78079 1.20668 1.21211 1.19916 1.21206 0.92977 0.90962 1.50868 0.92670 1.19030 0.93866 0.90815 0.97684 1.21884 0.99767 0.93379 1.00772 1.21490 0.91314 0.84200 1.01806 1.45402 1.10359 1.04548 1.79423 1.16077 0.85436 0.80806 0.77833 1.90906 1.14162 1.84111 1.57955 1.45450 1.08692 1.05319 1.81188 1.20632 0.97652 0.79080 0.96470 1.22345 1.02597 0.95476 0.96434 1.21289 1.00591 0.94815 0.98466 1.21401 0.97990 1.00246 0.96416 1.20511 0.98796 0.98171 0.98109 1.20422 1.00506 0.96161 0.98271 1.21666 0.97799 0.96978 0.99925 0.92929 0.96258 0.96244 0.92817 0.92806 0.92031 0.92039 0.77415 0.77406 0.89763 0.92113 0.91352 0.92226 0.92185 0.91217 0.91943 0.92172 0.92289 0.91955 0.91741 0.91017 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 12 N -0.74 -11.07 5.56 -65.23 -0.36 -11.43 16 13 C 0.70 10.93 8.48 -86.92 -0.74 10.19 16 14 O -0.59 -11.84 16.01 5.29 0.08 -11.75 16 15 N -0.75 -8.35 4.95 -59.37 -0.29 -8.65 16 16 C 0.17 1.69 1.94 -68.64 -0.13 1.56 16 17 C -0.13 -1.30 5.37 -25.62 -0.14 -1.44 16 18 C -0.11 -0.89 5.31 -27.44 -0.15 -1.04 16 19 C -0.12 -0.93 5.61 -27.34 -0.15 -1.08 16 20 C -0.12 -0.77 5.26 -29.60 -0.16 -0.92 16 21 C -0.12 -0.80 5.26 -29.60 -0.16 -0.95 16 22 C -0.13 -0.92 5.17 -27.34 -0.14 -1.06 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.39 4.65 8.49 -40.82 -0.35 4.31 16 31 H 0.39 3.21 8.49 -40.82 -0.35 2.86 16 32 H 0.08 1.06 6.08 -51.93 -0.32 0.74 16 33 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.41 6.63 -51.93 -0.34 0.07 16 37 H 0.07 0.63 6.98 -51.93 -0.36 0.26 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.36 7.47 -51.93 -0.39 -0.03 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 43 H 0.07 0.46 6.98 -51.93 -0.36 0.10 16 44 H 0.07 0.49 7.86 -51.93 -0.41 0.08 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -32.78 343.73 -10.02 -42.80 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.88 Total: 1.39 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -2.47 Total: -7.82 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.08 Total: -46.38 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.78 -10.02 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.518 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds