Wall clock time and date at job start Mon Mar 30 2020 01:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99883 * 2 1 4 4 H 1.48499 * 109.47058 * 270.00079 * 3 2 1 5 5 H 1.48499 * 109.47179 * 29.99754 * 3 2 1 6 6 H 1.48500 * 109.47468 * 149.99739 * 3 2 1 7 7 C 1.37876 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00199 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47207 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47290 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46974 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99869 * 180.02562 * 12 11 10 14 14 O 1.21589 * 120.00097 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00046 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99965 * 180.02562 * 15 13 12 17 17 C 1.54065 * 108.87405 * 277.96907 * 16 15 13 18 18 C 1.54066 * 112.81762 * 197.50625 * 17 16 15 19 19 C 1.50470 * 112.49875 * 318.28617 * 18 17 16 20 20 C 1.54246 * 108.51998 * 94.14981 * 19 18 17 21 21 C 1.45537 * 112.40731 * 280.01038 * 20 19 18 22 22 C 1.50473 * 108.87630 * 154.99590 * 16 15 13 23 23 H 0.96997 * 120.00149 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47736 * 59.99602 * 9 7 2 25 25 H 1.09005 * 109.47150 * 299.99560 * 9 7 2 26 26 H 1.09007 * 109.46710 * 60.00113 * 10 9 7 27 27 H 1.08991 * 109.47376 * 300.00466 * 10 9 7 28 28 H 1.08992 * 109.47284 * 60.00125 * 11 10 9 29 29 H 1.09005 * 109.47314 * 300.00071 * 11 10 9 30 30 H 0.96996 * 120.00276 * 359.97438 * 12 11 10 31 31 H 0.96996 * 120.00099 * 359.97438 * 15 13 12 32 32 H 1.08996 * 108.77304 * 36.48071 * 16 15 13 33 33 H 1.09005 * 108.81720 * 318.37164 * 17 16 15 34 34 H 1.09004 * 108.81387 * 76.75411 * 17 16 15 35 35 H 1.08997 * 108.87949 * 197.51000 * 18 17 16 36 36 H 1.09001 * 108.87760 * 79.06417 * 18 17 16 37 37 H 1.09003 * 109.63195 * 334.43897 * 19 18 17 38 38 H 1.09001 * 109.62960 * 213.85940 * 19 18 17 39 39 H 1.09001 * 108.89247 * 40.76541 * 20 19 18 40 40 H 1.09004 * 108.89281 * 159.35535 * 20 19 18 41 41 H 1.09000 * 108.89458 * 182.68905 * 21 20 19 42 42 H 1.08998 * 108.89747 * 301.18352 * 21 20 19 43 43 H 1.09006 * 109.62936 * 95.21532 * 22 16 15 44 44 H 1.08998 * 109.78811 * 334.73047 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4324 -6.1005 0.0018 13 6 1.9832 -7.3712 0.0019 14 8 0.7878 -7.5935 0.0020 15 7 2.8590 -8.3956 0.0030 16 6 2.3707 -9.7769 0.0025 17 6 2.0123 -10.1793 1.4459 18 6 1.9028 -11.7048 1.6311 19 6 1.1931 -12.3744 0.4856 20 6 2.2493 -12.8614 -0.5276 21 6 2.7266 -11.7902 -1.3895 22 6 3.4256 -10.6660 -0.5980 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8720 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8893 28 1 0.8535 -5.0451 -0.8885 29 1 0.8540 -5.0446 0.8914 30 1 3.3860 -5.9233 0.0014 31 1 3.8126 -8.2184 0.0033 32 1 1.4721 -9.8311 -0.6120 33 1 2.7808 -9.7978 2.1183 34 1 1.0574 -9.7251 1.7107 35 1 1.3572 -11.9100 2.5522 36 1 2.9058 -12.1226 1.7172 37 1 0.5237 -11.6623 0.0030 38 1 0.6215 -13.2254 0.8562 39 1 3.0955 -13.2790 0.0180 40 1 1.8096 -13.6424 -1.1479 41 1 3.4309 -12.2048 -2.1107 42 1 1.8792 -11.3675 -1.9293 43 1 4.0335 -11.1005 0.1957 44 1 4.0594 -10.0857 -1.2685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170887285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:26 Heat of formation + Delta-G solvation = -90.769798 kcal Electronic energy + Delta-G solvation = -20329.888014 eV Core-core repulsion = 17279.655444 eV Total energy + Delta-G solvation = -3050.232570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31105 -39.57355 -37.00914 -35.59326 -35.17545 -33.25252 -33.06432 -31.19596 -28.41816 -25.88702 -25.44434 -24.43547 -22.30853 -22.04599 -21.37594 -20.38104 -19.14416 -18.52364 -17.60317 -16.85153 -16.56855 -16.29539 -15.97069 -15.61508 -15.31313 -15.12365 -14.71961 -14.58703 -14.25096 -13.91831 -13.73026 -13.58890 -13.15674 -12.91639 -12.74890 -12.54399 -12.37925 -12.33456 -11.99858 -11.67024 -11.63071 -11.55659 -11.36730 -11.26447 -11.23152 -11.16212 -11.06426 -10.55333 -10.33058 -9.73517 -8.19262 -6.30951 1.41777 1.43443 1.54336 1.73586 2.16392 2.42233 3.14427 3.32477 3.64760 3.82373 4.06030 4.15725 4.18427 4.19572 4.23273 4.31608 4.43160 4.52011 4.55938 4.57896 4.87070 4.89957 4.95780 4.97505 5.05217 5.11694 5.17093 5.21681 5.30798 5.32280 5.35481 5.42812 5.47441 5.50046 5.55009 5.57933 5.64379 5.71097 5.84423 6.05951 6.22816 6.86480 7.15231 7.38655 7.61568 8.93030 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.055672 B = 0.002576 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.821954 B =10865.627659 C =11015.833865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.099 4.099 11 C 0.150 3.850 12 N -0.731 5.731 13 C 0.695 3.305 14 O -0.641 6.641 15 N -0.730 5.730 16 C 0.167 3.833 17 C -0.126 4.126 18 C -0.108 4.108 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.115 4.115 22 C -0.118 4.118 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.009 1.009 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.412 0.588 31 H 0.412 0.588 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.686 -26.656 0.107 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.137 4.137 11 C 0.025 3.975 12 N -0.387 5.387 13 C 0.394 3.606 14 O -0.523 6.523 15 N -0.387 5.387 16 C 0.062 3.938 17 C -0.165 4.165 18 C -0.146 4.146 19 C -0.162 4.162 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.156 4.156 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.248 0.752 31 H 0.248 0.752 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.468 -26.746 0.106 28.722 hybrid contribution 0.292 1.463 0.055 1.493 sum 10.761 -25.283 0.161 27.478 Atomic orbital electron populations 1.70117 1.07995 1.27809 1.51719 1.26049 0.95758 1.03640 0.94792 0.85394 0.78669 0.78179 0.78469 1.19783 1.21066 1.18362 1.21680 0.93768 0.91955 1.50417 0.91451 1.18948 0.94466 0.93010 0.95039 1.21579 0.98401 0.91605 1.02129 1.21051 0.91398 0.84789 1.00257 1.45038 1.10777 1.03592 1.79278 1.16271 0.85238 0.81485 0.77574 1.90883 1.16588 1.84818 1.60020 1.45322 1.09132 1.04724 1.79501 1.20747 0.97799 0.78891 0.96321 1.22295 1.00723 0.97126 0.96323 1.21268 1.01829 0.92970 0.98563 1.21412 0.98210 0.99991 0.96636 1.20501 0.98828 0.98111 0.97891 1.20430 1.00262 0.96110 0.98519 1.21641 0.96907 0.96510 1.00519 0.92810 0.99009 0.99018 0.91350 0.91287 0.93711 0.93772 0.75187 0.75160 0.92717 0.91500 0.95041 0.92181 0.90102 0.93560 0.91068 0.90621 0.91666 0.90278 0.93524 0.89156 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 11 C 0.15 5.56 5.67 86.38 0.49 6.05 16 12 N -0.73 -21.19 5.56 -478.54 -2.66 -23.85 16 13 C 0.69 21.72 8.48 179.05 1.52 23.24 16 14 O -0.64 -26.66 16.01 -4.00 -0.06 -26.73 16 15 N -0.73 -15.42 4.95 -460.01 -2.28 -17.70 16 16 C 0.17 3.30 1.94 44.53 0.09 3.39 16 17 C -0.13 -2.50 5.37 31.31 0.17 -2.33 16 18 C -0.11 -1.56 5.31 30.14 0.16 -1.40 16 19 C -0.12 -1.78 5.61 30.20 0.17 -1.61 16 20 C -0.12 -1.25 5.26 28.74 0.15 -1.10 16 21 C -0.12 -1.37 5.26 28.74 0.15 -1.22 16 22 C -0.12 -1.43 5.17 30.20 0.16 -1.27 16 23 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H -0.01 -0.50 8.14 -2.38 -0.02 -0.51 16 26 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.41 8.80 8.49 -92.71 -0.79 8.01 16 31 H 0.41 5.64 8.49 -92.71 -0.79 4.85 16 32 H 0.05 1.44 6.08 -2.39 -0.01 1.43 16 33 H 0.07 1.23 8.12 -2.38 -0.02 1.21 16 34 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.86 6.63 -2.39 -0.02 0.84 16 37 H 0.05 0.88 6.98 -2.39 -0.02 0.86 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 0.62 7.47 -2.39 -0.02 0.60 16 40 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.05 0.73 7.47 -2.39 -0.02 0.71 16 43 H 0.09 0.81 6.98 -2.38 -0.02 0.80 16 44 H 0.08 0.86 7.86 -2.39 -0.02 0.84 16 Total: -1.00 -73.29 343.73 0.77 -72.52 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -0.60 Total: 15.80 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.06 Total: -8.59 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -4.65 Total: -99.06 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.06 Total: -26.73 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -73.29 0.77 -72.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.245 kcal (2) G-P(sol) polarization free energy of solvation -73.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds