Wall clock time and date at job start Mon Mar 30 2020 01:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99675 * 2 1 3 5 5 C 1.50704 * 109.47487 * 295.00084 * 4 2 1 6 6 O 1.20826 * 119.99864 * 0.02562 * 5 4 2 7 7 O 1.34228 * 120.00314 * 179.97438 * 5 4 2 8 8 C 1.45205 * 117.00054 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46761 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.46783 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99989 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00194 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00130 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00331 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47153 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47080 * 119.99999 * 14 12 10 17 17 H 1.48499 * 109.47391 * 239.99901 * 14 12 10 18 18 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 2 1 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 2 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.53002 * 109.46891 * 299.99597 * 21 20 19 23 23 C 1.52997 * 109.46978 * 60.00410 * 22 21 20 24 24 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 25 25 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 26 26 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46920 * 54.99996 * 4 2 1 28 28 H 1.08998 * 109.47295 * 175.00289 * 4 2 1 29 29 H 1.08998 * 109.47270 * 300.00451 * 8 7 5 30 30 H 1.09001 * 109.46467 * 60.01028 * 8 7 5 31 31 H 1.08998 * 109.47205 * 300.00010 * 9 8 7 32 32 H 1.08997 * 109.47234 * 60.00480 * 9 8 7 33 33 H 0.96998 * 120.00560 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.46862 * 300.00565 * 18 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 19 18 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 19 18 2 37 37 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 39 39 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 40 40 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.47097 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47142 * 300.00176 * 22 21 20 43 43 H 1.09001 * 109.47375 * 59.99908 * 23 22 21 44 44 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0132 1.0832 2.3638 7 8 1.9830 -0.3899 3.6953 8 6 1.5660 0.4112 4.8322 9 6 2.0434 -0.2519 6.1258 10 6 1.6100 0.5791 7.3058 11 1 1.0497 1.4890 7.1489 12 6 1.9287 0.1780 8.5858 13 7 2.6114 -0.9297 8.7770 14 14 1.3909 1.2078 10.0486 15 1 0.6413 2.3964 9.5683 16 1 0.5160 0.3949 10.9313 17 1 2.5871 1.6503 10.8090 18 6 2.0400 -0.7212 -1.2492 19 6 3.5700 -0.7206 -1.2495 20 6 4.0800 -1.4413 -2.4990 21 6 3.5695 -0.7199 -3.7480 22 6 2.0395 -0.7206 -3.7477 23 6 1.5295 0.0002 -2.4982 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6053 -1.7197 1.2952 28 1 3.1263 -0.7994 1.2057 29 1 2.0003 1.4078 4.7534 30 1 0.4787 0.4884 4.8429 31 1 1.6093 -1.2486 6.2048 32 1 3.1305 -0.3289 6.1149 33 1 2.8359 -1.2118 9.6775 34 1 1.6766 -1.7488 -1.2492 35 1 3.9337 -1.2342 -0.3595 36 1 3.9329 0.3072 -1.2497 37 1 5.1700 -1.4413 -2.4990 38 1 3.7171 -2.4691 -2.4993 39 1 3.9324 0.3078 -3.7478 40 1 3.9333 -1.2331 -4.6382 41 1 1.6758 -0.2070 -4.6377 42 1 1.6766 -1.7484 -3.7479 43 1 1.8924 1.0280 -2.4980 44 1 0.4395 0.0001 -2.4982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171329108.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:03 Heat of formation + Delta-G solvation = -141.793543 kcal Electronic energy + Delta-G solvation = -20512.769876 eV Core-core repulsion = 17428.032000 eV Total energy + Delta-G solvation = -3084.737877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.22958 -39.05263 -36.32450 -34.75146 -33.33619 -31.17139 -30.46384 -29.67155 -27.96820 -25.02781 -23.60955 -22.63511 -21.33189 -20.62991 -20.00338 -19.66205 -17.37858 -16.32634 -16.16561 -15.87630 -15.34805 -14.85261 -14.48301 -14.37370 -14.08120 -13.85615 -13.45787 -13.29037 -12.81488 -12.56185 -12.36423 -12.19073 -11.98761 -11.61889 -11.36707 -11.32076 -11.28684 -11.09869 -11.01052 -10.82555 -10.72841 -10.66473 -10.56200 -10.25848 -10.06464 -9.97787 -9.61185 -9.54056 -9.26574 -8.44472 -6.10266 -4.14491 2.64994 3.24880 3.27504 3.35343 3.41081 4.38202 4.42591 4.44114 4.53343 4.76057 4.87795 5.01342 5.10488 5.14375 5.25936 5.26327 5.30831 5.32691 5.41848 5.45680 5.54550 5.63311 5.68763 5.72116 5.78478 5.88984 5.92998 5.95766 5.97893 6.03612 6.10594 6.11606 6.16552 6.20093 6.36752 6.42780 6.66016 7.08874 7.57704 7.63406 7.87849 8.21826 8.32294 8.91455 9.49966 11.01352 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.047439 B = 0.002837 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.088520 B = 9867.607305 C =10236.506609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.074 4.074 3 H 0.079 0.921 4 C -0.115 4.115 5 C 0.454 3.546 6 O -0.517 6.517 7 O -0.360 6.360 8 C 0.075 3.925 9 C 0.024 3.976 10 C -0.525 4.525 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.081 4.081 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.596 -1.637 -24.529 24.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.092 4.092 3 H 0.097 0.903 4 C -0.153 4.153 5 C 0.297 3.703 6 O -0.407 6.407 7 O -0.276 6.276 8 C 0.003 3.997 9 C -0.013 4.013 10 C -0.563 4.563 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.099 4.099 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.153 4.153 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.483 -1.439 -24.367 24.414 hybrid contribution -0.279 0.579 0.959 1.155 sum 0.205 -0.860 -23.408 23.425 Atomic orbital electron populations 1.22028 0.94672 1.01600 1.03096 1.20990 0.96583 0.99846 0.91803 0.90281 1.21551 1.03825 1.00139 0.89765 1.23623 0.76579 0.84320 0.85777 1.90585 1.37717 1.24879 1.87523 1.86529 1.71951 1.53713 1.15446 1.23600 0.99155 0.93961 0.83004 1.19170 0.97772 0.96833 0.87554 1.21026 1.36061 1.08743 0.90510 0.92232 1.24989 0.94936 0.95204 0.99085 1.69984 1.38652 1.22398 1.21865 0.86420 0.78447 0.80254 0.82225 1.19595 1.20824 1.20818 1.21191 0.95200 0.99696 0.93815 1.21711 0.95219 1.01069 0.97899 1.21527 1.00105 0.99409 0.94629 1.21542 0.95793 1.00717 0.97723 1.21536 0.95642 1.00720 0.97785 1.21629 1.00585 0.99353 0.93701 0.90771 0.92532 0.93192 0.88061 0.87794 0.92435 0.92434 0.95401 0.95391 0.92769 0.90986 0.91427 0.91837 0.92144 0.92047 0.92112 0.92393 0.92289 0.92110 0.91973 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.58 37.16 0.32 -1.45 16 2 C -0.07 -0.80 1.62 -90.63 -0.15 -0.94 16 3 H 0.08 0.96 7.96 -51.93 -0.41 0.54 16 4 C -0.12 -1.39 5.07 -27.88 -0.14 -1.53 16 5 C 0.45 7.83 7.68 36.01 0.28 8.11 16 6 O -0.52 -10.02 13.72 -18.75 -0.26 -10.27 16 7 O -0.36 -7.31 10.22 -39.25 -0.40 -7.71 16 8 C 0.08 1.71 5.40 37.16 0.20 1.91 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 11 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 14 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C -0.08 -0.69 1.78 -90.62 -0.16 -0.85 16 19 C -0.12 -0.99 4.86 -26.73 -0.13 -1.12 16 20 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 21 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 22 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 23 C -0.12 -0.92 4.85 -26.73 -0.13 -1.04 16 24 H 0.07 1.05 5.96 -51.93 -0.31 0.74 16 25 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.10 1.10 6.17 -51.93 -0.32 0.78 16 29 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 30 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.55 6.32 -51.93 -0.33 0.22 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -30.65 343.04 -8.64 -39.29 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -7.92 Total: -4.06 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -0.95 Total: -13.10 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.66 Total: -17.98 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.65 -8.64 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171329108.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.503 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds