Wall clock time and date at job start Mon Mar 30 2020 01:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99675 * 2 1 3 5 5 C 1.50704 * 109.47487 * 295.00084 * 4 2 1 6 6 O 1.20826 * 119.99864 * 0.02562 * 5 4 2 7 7 O 1.34228 * 120.00314 * 179.97438 * 5 4 2 8 8 C 1.45205 * 117.00054 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46761 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.46783 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99989 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00194 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00130 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00331 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47153 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47080 * 119.99999 * 14 12 10 17 17 H 1.48499 * 109.47391 * 239.99901 * 14 12 10 18 18 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 2 1 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 2 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.53002 * 109.46891 * 299.99597 * 21 20 19 23 23 C 1.52997 * 109.46978 * 60.00410 * 22 21 20 24 24 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 25 25 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 26 26 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46920 * 54.99996 * 4 2 1 28 28 H 1.08998 * 109.47295 * 175.00289 * 4 2 1 29 29 H 1.08998 * 109.47270 * 300.00451 * 8 7 5 30 30 H 1.09001 * 109.46467 * 60.01028 * 8 7 5 31 31 H 1.08998 * 109.47205 * 300.00010 * 9 8 7 32 32 H 1.08997 * 109.47234 * 60.00480 * 9 8 7 33 33 H 0.96998 * 120.00560 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.46862 * 300.00565 * 18 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 19 18 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 19 18 2 37 37 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 39 39 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 40 40 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.47097 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47142 * 300.00176 * 22 21 20 43 43 H 1.09001 * 109.47375 * 59.99908 * 23 22 21 44 44 H 1.09000 * 109.47140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0132 1.0832 2.3638 7 8 1.9830 -0.3899 3.6953 8 6 1.5660 0.4112 4.8322 9 6 2.0434 -0.2519 6.1258 10 6 1.6100 0.5791 7.3058 11 1 1.0497 1.4890 7.1489 12 6 1.9287 0.1780 8.5858 13 7 2.6114 -0.9297 8.7770 14 14 1.3909 1.2078 10.0486 15 1 0.6413 2.3964 9.5683 16 1 0.5160 0.3949 10.9313 17 1 2.5871 1.6503 10.8090 18 6 2.0400 -0.7212 -1.2492 19 6 3.5700 -0.7206 -1.2495 20 6 4.0800 -1.4413 -2.4990 21 6 3.5695 -0.7199 -3.7480 22 6 2.0395 -0.7206 -3.7477 23 6 1.5295 0.0002 -2.4982 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6053 -1.7197 1.2952 28 1 3.1263 -0.7994 1.2057 29 1 2.0003 1.4078 4.7534 30 1 0.4787 0.4884 4.8429 31 1 1.6093 -1.2486 6.2048 32 1 3.1305 -0.3289 6.1149 33 1 2.8359 -1.2118 9.6775 34 1 1.6766 -1.7488 -1.2492 35 1 3.9337 -1.2342 -0.3595 36 1 3.9329 0.3072 -1.2497 37 1 5.1700 -1.4413 -2.4990 38 1 3.7171 -2.4691 -2.4993 39 1 3.9324 0.3078 -3.7478 40 1 3.9333 -1.2331 -4.6382 41 1 1.6758 -0.2070 -4.6377 42 1 1.6766 -1.7484 -3.7479 43 1 1.8924 1.0280 -2.4980 44 1 0.4395 0.0001 -2.4982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171329108.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:03 Heat of formation + Delta-G solvation = -156.455701 kcal Electronic energy + Delta-G solvation = -20513.405675 eV Core-core repulsion = 17428.032000 eV Total energy + Delta-G solvation = -3085.373676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58872 -39.90080 -37.80879 -35.68583 -35.45957 -32.44370 -31.74851 -30.57172 -28.99015 -26.97809 -24.55137 -23.32248 -23.00133 -22.03365 -20.69298 -20.59890 -18.97929 -18.15380 -17.65411 -17.34424 -16.55555 -16.14914 -15.81079 -15.11882 -15.04376 -14.75283 -14.49997 -14.41557 -14.24472 -14.09666 -13.47076 -13.24245 -13.08288 -12.93728 -12.71906 -12.61777 -12.58375 -12.33455 -12.10101 -12.04387 -11.90792 -11.78932 -11.59149 -11.49109 -11.43921 -11.27405 -11.17495 -10.77783 -10.68488 -10.63371 -8.28741 -6.42105 1.24640 1.39950 1.40602 1.54182 1.83339 2.39406 3.05533 3.62401 3.69207 3.80326 3.96878 4.02764 4.18790 4.21412 4.26237 4.38745 4.46945 4.48572 4.54958 4.67296 4.68592 4.71741 4.72385 4.77189 4.83782 4.90425 5.01476 5.09057 5.20700 5.24904 5.29439 5.33747 5.36381 5.37975 5.43064 5.44913 5.48483 5.58354 5.63124 5.69323 5.77425 6.05133 6.70974 6.81566 7.27871 8.84204 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.047439 B = 0.002837 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.088520 B = 9867.607305 C =10236.506609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.068 4.068 3 H 0.063 0.937 4 C -0.107 4.107 5 C 0.449 3.551 6 O -0.539 6.539 7 O -0.370 6.370 8 C 0.091 3.909 9 C 0.030 3.970 10 C -0.550 4.550 11 H 0.063 0.937 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.974 3.026 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.274 1.274 18 C -0.072 4.072 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.115 4.115 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 -1.725 -25.517 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.087 4.087 3 H 0.081 0.919 4 C -0.144 4.144 5 C 0.294 3.706 6 O -0.430 6.430 7 O -0.287 6.287 8 C 0.018 3.982 9 C -0.007 4.007 10 C -0.588 4.588 11 H 0.082 0.918 12 C -0.193 4.193 13 N -0.566 5.566 14 Si 0.798 3.202 15 H -0.187 1.187 16 H -0.200 1.200 17 H -0.199 1.199 18 C -0.090 4.090 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.153 4.153 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.302 -1.526 -25.384 25.431 hybrid contribution -0.213 0.589 1.185 1.341 sum 0.089 -0.937 -24.198 24.217 Atomic orbital electron populations 1.21995 0.95020 1.02111 1.02094 1.20969 0.96243 0.99207 0.92281 0.91868 1.21755 1.05178 1.00307 0.87202 1.24699 0.75692 0.84440 0.85727 1.90582 1.38708 1.26133 1.87552 1.86528 1.72457 1.53615 1.16105 1.23096 0.98795 0.93551 0.82794 1.18980 0.96156 0.95943 0.89592 1.21402 1.36536 1.09240 0.91614 0.91831 1.25974 0.94664 0.96407 1.02288 1.70098 1.39506 1.24026 1.22988 0.85264 0.78299 0.78610 0.78056 1.18702 1.19954 1.19946 1.21122 0.95425 0.99818 0.92670 1.21725 0.94882 1.00882 0.98586 1.21520 1.00334 0.99494 0.94183 1.21551 0.95754 1.00565 0.97945 1.21522 0.95644 1.00875 0.97411 1.21623 1.00670 0.99059 0.93903 0.93981 0.91281 0.91912 0.85909 0.85858 0.92494 0.92474 0.97552 0.97544 0.92280 0.90015 0.91277 0.92531 0.91834 0.91579 0.92536 0.91550 0.91701 0.91654 0.92666 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.58 71.98 0.62 -2.72 16 2 C -0.07 -1.39 1.62 -10.80 -0.02 -1.40 16 3 H 0.06 1.50 7.96 -2.39 -0.02 1.48 16 4 C -0.11 -2.42 5.07 29.85 0.15 -2.27 16 5 C 0.45 15.39 7.68 71.24 0.55 15.94 16 6 O -0.54 -21.05 13.72 21.96 0.30 -20.75 16 7 O -0.37 -15.12 10.22 -51.40 -0.53 -15.65 16 8 C 0.09 4.20 5.40 71.98 0.39 4.59 16 9 C 0.03 1.67 5.35 29.85 0.16 1.83 16 10 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 11 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 12 C 0.01 0.32 5.46 84.65 0.46 0.78 16 13 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 14 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 15 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 C -0.07 -1.08 1.78 -10.79 -0.02 -1.10 16 19 C -0.12 -1.79 4.86 30.59 0.15 -1.64 16 20 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 21 C -0.12 -1.43 5.92 30.59 0.18 -1.24 16 22 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 23 C -0.12 -1.62 4.85 30.60 0.15 -1.47 16 24 H 0.04 1.18 5.96 -2.38 -0.01 1.17 16 25 H 0.07 1.29 6.43 -2.39 -0.02 1.27 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.12 2.36 6.17 -2.39 -0.01 2.35 16 29 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 30 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 31 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 0.97 6.32 -2.39 -0.02 0.96 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.93 6.43 -2.39 -0.02 0.92 16 Total: -1.00 -66.05 343.04 6.39 -59.65 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.94 Total: 9.01 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 3.36 Total: -22.65 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.28 Total: -55.64 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.22 Total: -36.40 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -66.05 6.39 -59.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171329108.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.802 kcal (2) G-P(sol) polarization free energy of solvation -66.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds