Wall clock time and date at job start Mon Mar 30 2020 01:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47518 * 2 1 4 4 C 1.53006 * 109.47021 * 239.99913 * 2 1 3 5 5 C 1.50699 * 109.46866 * 65.00201 * 4 2 1 6 6 O 1.20828 * 120.00000 * 359.97438 * 5 4 2 7 7 O 1.34231 * 120.00150 * 180.02562 * 5 4 2 8 8 C 1.45196 * 117.00254 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47375 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47363 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99851 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99913 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00356 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99604 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47179 * 90.00024 * 14 12 10 16 16 H 1.48502 * 109.46840 * 209.99393 * 14 12 10 17 17 H 1.48499 * 109.47294 * 329.99501 * 14 12 10 18 18 C 1.52999 * 109.47148 * 120.00339 * 2 1 3 19 19 C 1.52996 * 109.47179 * 299.99730 * 18 2 1 20 20 C 1.53003 * 109.47531 * 179.97438 * 19 18 2 21 21 C 1.53000 * 109.46789 * 59.99842 * 20 19 18 22 22 C 1.52996 * 109.47375 * 299.99994 * 21 20 19 23 23 C 1.53003 * 109.47157 * 60.00231 * 22 21 20 24 24 H 1.08992 * 109.47518 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46905 * 300.00035 * 1 2 3 26 26 H 1.09004 * 109.47446 * 59.99546 * 1 2 3 27 27 H 1.08993 * 109.46955 * 185.00420 * 4 2 1 28 28 H 1.09000 * 109.47050 * 305.00249 * 4 2 1 29 29 H 1.09001 * 109.46603 * 299.99750 * 8 7 5 30 30 H 1.08995 * 109.47244 * 59.99281 * 8 7 5 31 31 H 1.09002 * 109.46566 * 300.00007 * 9 8 7 32 32 H 1.09000 * 109.47303 * 59.99035 * 9 8 7 33 33 H 0.96993 * 120.00119 * 180.02562 * 13 12 10 34 34 H 1.09009 * 109.47170 * 59.99770 * 18 2 1 35 35 H 1.09001 * 109.47244 * 300.00397 * 19 18 2 36 36 H 1.09001 * 109.47165 * 59.99753 * 19 18 2 37 37 H 1.08996 * 109.46762 * 300.00292 * 20 19 18 38 38 H 1.09002 * 109.47262 * 179.97438 * 20 19 18 39 39 H 1.08995 * 109.47209 * 180.02562 * 21 20 19 40 40 H 1.08992 * 109.47346 * 60.00198 * 21 20 19 41 41 H 1.09003 * 109.47406 * 300.00706 * 22 21 20 42 42 H 1.08997 * 109.47395 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47786 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47183 * 59.99532 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 8 1.0133 1.0831 -2.3637 7 8 1.9830 -0.3900 -3.6953 8 6 1.5659 0.4110 -4.8322 9 6 2.0432 -0.2520 -6.1258 10 6 1.6098 0.5791 -7.3058 11 1 1.0496 1.4890 -7.1488 12 6 1.9276 0.1773 -8.5859 13 7 2.6094 -0.9310 -8.7771 14 14 1.3898 1.2072 -10.0486 15 1 2.4436 2.2040 -10.3664 16 1 1.1734 0.3242 -11.2229 17 1 0.1248 1.9119 -9.7195 18 6 2.0400 -0.7213 1.2492 19 6 1.5301 -0.0001 2.4985 20 6 2.0395 -0.7218 3.7477 21 6 3.5695 -0.7224 3.7480 22 6 4.0795 -1.4436 2.4988 23 6 3.5700 -0.7220 1.2495 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 3.1262 -0.7996 -1.2056 28 1 1.6053 -1.7198 -1.2952 29 1 0.4787 0.4884 -4.8428 30 1 2.0003 1.4076 -4.7534 31 1 3.1304 -0.3290 -6.1148 32 1 1.6092 -1.2488 -6.2048 33 1 2.8332 -1.2134 -9.6776 34 1 1.6766 -1.7491 1.2492 35 1 1.8934 1.0275 2.4985 36 1 0.4400 -0.0001 2.4985 37 1 1.6758 -1.7493 3.7474 38 1 1.6766 -0.2077 4.6377 39 1 3.9325 -1.2368 4.6377 40 1 3.9333 0.3050 3.7482 41 1 3.7157 -2.4712 2.4984 42 1 5.1694 -1.4437 2.4987 43 1 3.9329 -1.2360 0.3594 44 1 3.9337 0.3056 1.2497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171329111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:06 Heat of formation + Delta-G solvation = -141.767392 kcal Electronic energy + Delta-G solvation = -20512.568713 eV Core-core repulsion = 17427.831971 eV Total energy + Delta-G solvation = -3084.736743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.22922 -39.05227 -36.32485 -34.75119 -33.33530 -31.17141 -30.46418 -29.67197 -27.96875 -25.02638 -23.60881 -22.63523 -21.33062 -20.62923 -20.00213 -19.66225 -17.37863 -16.32457 -16.16548 -15.87434 -15.34725 -14.85302 -14.48620 -14.37459 -14.08205 -13.85658 -13.45775 -13.29032 -12.81526 -12.56087 -12.35661 -12.19110 -11.98768 -11.61807 -11.36695 -11.32038 -11.28692 -11.09120 -11.02290 -10.82688 -10.72149 -10.66684 -10.56023 -10.25855 -10.06579 -9.98037 -9.60928 -9.53766 -9.28107 -8.44030 -6.10061 -4.14357 2.64970 3.24780 3.28692 3.35001 3.40197 4.38229 4.42581 4.44171 4.53335 4.76054 4.87800 5.01372 5.10528 5.14402 5.25954 5.26452 5.30800 5.32698 5.41891 5.45700 5.54557 5.63339 5.68744 5.72113 5.78464 5.88981 5.92999 5.95758 5.97890 6.03617 6.10622 6.11627 6.16563 6.20114 6.36759 6.42796 6.66094 7.08877 7.57565 7.63491 7.87899 8.21945 8.32317 8.91333 9.50007 11.01528 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.047441 B = 0.002837 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.066527 B = 9867.838773 C =10236.818173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.074 4.074 3 H 0.079 0.921 4 C -0.115 4.115 5 C 0.454 3.546 6 O -0.517 6.517 7 O -0.360 6.360 8 C 0.075 3.925 9 C 0.024 3.976 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.081 4.081 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.122 4.122 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 -1.647 24.517 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.092 4.092 3 H 0.097 0.903 4 C -0.153 4.153 5 C 0.297 3.703 6 O -0.407 6.407 7 O -0.276 6.276 8 C 0.003 3.997 9 C -0.013 4.013 10 C -0.564 4.564 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.099 4.099 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.159 4.159 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.488 -1.455 24.353 24.401 hybrid contribution -0.277 0.594 -0.954 1.158 sum 0.211 -0.861 23.399 23.415 Atomic orbital electron populations 1.22026 0.94671 1.01600 1.03097 1.20991 0.96582 0.99844 0.91800 0.90280 1.21552 1.03826 1.00139 0.89765 1.23623 0.76578 0.84321 0.85775 1.90585 1.37719 1.24878 1.87523 1.86528 1.71952 1.53711 1.15445 1.23597 0.99156 0.93961 0.83010 1.19162 0.97759 0.96827 0.87537 1.20989 1.36190 1.08734 0.90520 0.92285 1.24987 0.94941 0.95179 0.99067 1.69970 1.38647 1.22305 1.21973 0.86474 0.79122 0.79977 0.81757 1.20469 1.21039 1.19723 1.21194 0.95205 0.99693 0.93816 1.21628 1.00588 0.99350 0.93701 1.21537 0.95646 1.00714 0.97787 1.21542 0.95799 1.00713 0.97725 1.21529 1.00108 0.99406 0.94630 1.21714 0.95225 1.01062 0.97904 0.93191 0.92533 0.90771 0.87793 0.88060 0.92435 0.92440 0.95407 0.95400 0.92711 0.90993 0.91968 0.91574 0.92104 0.92286 0.92394 0.92107 0.92041 0.92142 0.91430 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.58 37.16 0.32 -1.45 16 2 C -0.07 -0.80 1.62 -90.62 -0.15 -0.94 16 3 H 0.08 0.96 7.96 -51.93 -0.41 0.54 16 4 C -0.12 -1.39 5.07 -27.88 -0.14 -1.53 16 5 C 0.45 7.83 7.68 36.01 0.28 8.11 16 6 O -0.52 -10.02 13.72 -18.75 -0.26 -10.28 16 7 O -0.36 -7.31 10.22 -39.26 -0.40 -7.71 16 8 C 0.08 1.71 5.40 37.16 0.20 1.91 16 9 C 0.02 0.64 5.35 -27.89 -0.15 0.50 16 10 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 14 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 18 C -0.08 -0.69 1.77 -90.62 -0.16 -0.85 16 19 C -0.12 -0.92 4.85 -26.73 -0.13 -1.04 16 20 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 21 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 22 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 23 C -0.12 -1.00 4.86 -26.73 -0.13 -1.13 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 26 H 0.07 1.05 5.96 -51.93 -0.31 0.74 16 27 H 0.10 1.10 6.17 -51.93 -0.32 0.78 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 30 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.55 6.32 -51.93 -0.33 0.22 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -30.63 343.04 -8.64 -39.27 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -7.92 Total: -4.03 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -0.95 Total: -13.10 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.74 Total: -25.85 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.66 Total: -17.98 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.63 -8.64 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171329111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.494 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds