Wall clock time and date at job start Mon Mar 30 2020 01:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47518 * 2 1 4 4 C 1.53006 * 109.47021 * 239.99913 * 2 1 3 5 5 C 1.50699 * 109.46866 * 65.00201 * 4 2 1 6 6 O 1.20828 * 120.00000 * 359.97438 * 5 4 2 7 7 O 1.34231 * 120.00150 * 180.02562 * 5 4 2 8 8 C 1.45196 * 117.00254 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47375 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47363 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99851 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99913 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00356 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99604 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47179 * 90.00024 * 14 12 10 16 16 H 1.48502 * 109.46840 * 209.99393 * 14 12 10 17 17 H 1.48499 * 109.47294 * 329.99501 * 14 12 10 18 18 C 1.52999 * 109.47148 * 120.00339 * 2 1 3 19 19 C 1.52996 * 109.47179 * 299.99730 * 18 2 1 20 20 C 1.53003 * 109.47531 * 179.97438 * 19 18 2 21 21 C 1.53000 * 109.46789 * 59.99842 * 20 19 18 22 22 C 1.52996 * 109.47375 * 299.99994 * 21 20 19 23 23 C 1.53003 * 109.47157 * 60.00231 * 22 21 20 24 24 H 1.08992 * 109.47518 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46905 * 300.00035 * 1 2 3 26 26 H 1.09004 * 109.47446 * 59.99546 * 1 2 3 27 27 H 1.08993 * 109.46955 * 185.00420 * 4 2 1 28 28 H 1.09000 * 109.47050 * 305.00249 * 4 2 1 29 29 H 1.09001 * 109.46603 * 299.99750 * 8 7 5 30 30 H 1.08995 * 109.47244 * 59.99281 * 8 7 5 31 31 H 1.09002 * 109.46566 * 300.00007 * 9 8 7 32 32 H 1.09000 * 109.47303 * 59.99035 * 9 8 7 33 33 H 0.96993 * 120.00119 * 180.02562 * 13 12 10 34 34 H 1.09009 * 109.47170 * 59.99770 * 18 2 1 35 35 H 1.09001 * 109.47244 * 300.00397 * 19 18 2 36 36 H 1.09001 * 109.47165 * 59.99753 * 19 18 2 37 37 H 1.08996 * 109.46762 * 300.00292 * 20 19 18 38 38 H 1.09002 * 109.47262 * 179.97438 * 20 19 18 39 39 H 1.08995 * 109.47209 * 180.02562 * 21 20 19 40 40 H 1.08992 * 109.47346 * 60.00198 * 21 20 19 41 41 H 1.09003 * 109.47406 * 300.00706 * 22 21 20 42 42 H 1.08997 * 109.47395 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47786 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47183 * 59.99532 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 8 1.0133 1.0831 -2.3637 7 8 1.9830 -0.3900 -3.6953 8 6 1.5659 0.4110 -4.8322 9 6 2.0432 -0.2520 -6.1258 10 6 1.6098 0.5791 -7.3058 11 1 1.0496 1.4890 -7.1488 12 6 1.9276 0.1773 -8.5859 13 7 2.6094 -0.9310 -8.7771 14 14 1.3898 1.2072 -10.0486 15 1 2.4436 2.2040 -10.3664 16 1 1.1734 0.3242 -11.2229 17 1 0.1248 1.9119 -9.7195 18 6 2.0400 -0.7213 1.2492 19 6 1.5301 -0.0001 2.4985 20 6 2.0395 -0.7218 3.7477 21 6 3.5695 -0.7224 3.7480 22 6 4.0795 -1.4436 2.4988 23 6 3.5700 -0.7220 1.2495 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 3.1262 -0.7996 -1.2056 28 1 1.6053 -1.7198 -1.2952 29 1 0.4787 0.4884 -4.8428 30 1 2.0003 1.4076 -4.7534 31 1 3.1304 -0.3290 -6.1148 32 1 1.6092 -1.2488 -6.2048 33 1 2.8332 -1.2134 -9.6776 34 1 1.6766 -1.7491 1.2492 35 1 1.8934 1.0275 2.4985 36 1 0.4400 -0.0001 2.4985 37 1 1.6758 -1.7493 3.7474 38 1 1.6766 -0.2077 4.6377 39 1 3.9325 -1.2368 4.6377 40 1 3.9333 0.3050 3.7482 41 1 3.7157 -2.4712 2.4984 42 1 5.1694 -1.4437 2.4987 43 1 3.9329 -1.2360 0.3594 44 1 3.9337 0.3056 1.2497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171329111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:05 Heat of formation + Delta-G solvation = -156.415964 kcal Electronic energy + Delta-G solvation = -20513.203923 eV Core-core repulsion = 17427.831971 eV Total energy + Delta-G solvation = -3085.371952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58880 -39.90039 -37.80938 -35.68578 -35.45897 -32.44444 -31.74857 -30.57212 -28.99103 -26.97652 -24.55089 -23.32234 -23.00044 -22.03376 -20.69285 -20.59815 -18.97860 -18.15128 -17.65428 -17.34400 -16.55774 -16.14900 -15.81123 -15.11901 -15.04426 -14.75345 -14.49982 -14.40931 -14.24516 -14.09716 -13.47243 -13.24097 -13.07573 -12.94755 -12.71677 -12.59969 -12.59326 -12.33193 -12.10137 -12.04454 -11.90909 -11.79096 -11.59221 -11.50682 -11.43614 -11.27626 -11.17680 -10.77792 -10.68442 -10.62795 -8.28568 -6.42029 1.24589 1.39878 1.41909 1.53067 1.83322 2.39459 3.05665 3.62371 3.69212 3.80309 3.96878 4.02804 4.18778 4.21403 4.26238 4.38758 4.46924 4.48604 4.54958 4.67289 4.68618 4.71749 4.72356 4.77208 4.83781 4.90426 5.01453 5.09053 5.20668 5.24882 5.29357 5.33742 5.36384 5.37933 5.43039 5.44917 5.48479 5.58367 5.63049 5.69292 5.77399 6.05196 6.70840 6.81534 7.27877 8.84178 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.047441 B = 0.002837 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.066527 B = 9867.838773 C =10236.818173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.068 4.068 3 H 0.063 0.937 4 C -0.107 4.107 5 C 0.449 3.551 6 O -0.539 6.539 7 O -0.370 6.370 8 C 0.091 3.909 9 C 0.031 3.969 10 C -0.552 4.552 11 H 0.064 0.936 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.974 3.026 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.264 1.264 18 C -0.072 4.072 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.123 4.123 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 -1.716 25.512 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.087 4.087 3 H 0.081 0.919 4 C -0.144 4.144 5 C 0.294 3.706 6 O -0.430 6.430 7 O -0.287 6.287 8 C 0.018 3.982 9 C -0.006 4.006 10 C -0.589 4.589 11 H 0.082 0.918 12 C -0.193 4.193 13 N -0.566 5.566 14 Si 0.797 3.203 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.188 1.188 18 C -0.090 4.090 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.161 4.161 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.307 -1.522 25.376 25.424 hybrid contribution -0.211 0.598 -1.181 1.340 sum 0.096 -0.923 24.195 24.213 Atomic orbital electron populations 1.21993 0.95020 1.02111 1.02095 1.20970 0.96241 0.99206 0.92277 0.91866 1.21756 1.05179 1.00306 0.87204 1.24699 0.75691 0.84440 0.85725 1.90582 1.38709 1.26131 1.87552 1.86527 1.72459 1.53616 1.16104 1.23093 0.98791 0.93557 0.82796 1.18974 0.96143 0.95938 0.89583 1.21378 1.36665 1.09258 0.91621 0.91812 1.25975 0.94664 0.96381 1.02278 1.70088 1.39514 1.23949 1.23048 0.85318 0.79057 0.78288 0.77609 1.19470 1.20259 1.18788 1.21125 0.95431 0.99815 0.92672 1.21622 1.00673 0.99058 0.93902 1.21523 0.95648 1.00867 0.97412 1.21551 0.95758 1.00564 0.97946 1.21521 1.00336 0.99490 0.94184 1.21729 0.94886 1.00877 0.98591 0.91912 0.91281 0.93981 0.85857 0.85909 0.92484 0.92483 0.97563 0.97562 0.92273 0.90023 0.92659 0.91430 0.91649 0.91698 0.91551 0.92530 0.91574 0.91833 0.91281 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.58 71.98 0.62 -2.72 16 2 C -0.07 -1.39 1.62 -10.79 -0.02 -1.40 16 3 H 0.06 1.50 7.96 -2.39 -0.02 1.48 16 4 C -0.11 -2.42 5.07 29.85 0.15 -2.27 16 5 C 0.45 15.39 7.68 71.24 0.55 15.94 16 6 O -0.54 -21.05 13.72 21.96 0.30 -20.75 16 7 O -0.37 -15.13 10.22 -51.43 -0.53 -15.65 16 8 C 0.09 4.20 5.40 71.98 0.39 4.59 16 9 C 0.03 1.69 5.35 29.85 0.16 1.85 16 10 C -0.55 -31.77 9.11 25.60 0.23 -31.54 16 11 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 12 C 0.01 0.35 5.46 84.66 0.46 0.81 16 13 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 14 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 17 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 18 C -0.07 -1.08 1.77 -10.79 -0.02 -1.10 16 19 C -0.12 -1.62 4.85 30.59 0.15 -1.47 16 20 C -0.12 -1.38 5.92 30.60 0.18 -1.20 16 21 C -0.12 -1.43 5.92 30.59 0.18 -1.24 16 22 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 23 C -0.12 -1.79 4.86 30.60 0.15 -1.64 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 1.29 6.43 -2.39 -0.02 1.27 16 26 H 0.04 1.18 5.96 -2.38 -0.01 1.17 16 27 H 0.12 2.36 6.17 -2.39 -0.01 2.35 16 28 H 0.12 2.31 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 30 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 31 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.08 1.11 8.14 -2.38 -0.02 1.10 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.93 6.43 -2.39 -0.02 0.91 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.97 6.32 -2.39 -0.02 0.96 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -66.03 343.04 6.39 -59.64 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.94 Total: 9.13 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.36 Total: -22.68 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.22 Total: -36.40 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.03 6.39 -59.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171329111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.781 kcal (2) G-P(sol) polarization free energy of solvation -66.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds