Wall clock time and date at job start Mon Mar 30 2020 01:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46828 * 2 1 4 4 C 1.52996 * 109.47352 * 119.99892 * 2 1 3 5 5 C 1.53004 * 109.47336 * 295.00605 * 4 2 1 6 6 C 1.53005 * 109.46566 * 294.99953 * 5 4 2 7 7 C 1.53005 * 109.46909 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46898 * 59.99466 * 7 6 5 9 9 C 1.52992 * 109.47358 * 300.00101 * 8 7 6 10 10 C 1.52993 * 109.47268 * 174.99936 * 5 4 2 11 11 C 1.50697 * 109.47194 * 240.00529 * 2 1 3 12 12 O 1.20833 * 119.99747 * 240.00031 * 11 2 1 13 13 O 1.34230 * 120.00262 * 59.71653 * 11 2 1 14 14 C 1.45202 * 116.99836 * 180.27336 * 13 11 2 15 15 C 1.52994 * 109.46919 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47473 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99561 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00335 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00015 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99790 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46972 * 60.00315 * 20 18 16 22 22 H 1.48502 * 109.47205 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47336 * 299.99813 * 20 18 16 24 24 H 1.09001 * 109.47378 * 60.00060 * 1 2 3 25 25 H 1.09004 * 109.46828 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47167 * 299.99666 * 1 2 3 27 27 H 1.09000 * 109.47046 * 55.00126 * 4 2 1 28 28 H 1.08999 * 109.47456 * 175.00152 * 4 2 1 29 29 H 1.09002 * 109.47073 * 54.99439 * 5 4 2 30 30 H 1.09002 * 109.47005 * 299.99528 * 6 5 4 31 31 H 1.08993 * 109.47582 * 59.99931 * 6 5 4 32 32 H 1.08995 * 109.46632 * 299.99888 * 7 6 5 33 33 H 1.08997 * 109.46805 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.46808 * 179.97438 * 8 7 6 35 35 H 1.08995 * 109.47134 * 60.00730 * 8 7 6 36 36 H 1.08996 * 109.47475 * 299.99843 * 9 8 7 37 37 H 1.09007 * 109.47129 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47387 * 299.99673 * 10 5 4 39 39 H 1.09002 * 109.47480 * 59.99752 * 10 5 4 40 40 H 1.08998 * 109.47630 * 300.00638 * 14 13 11 41 41 H 1.09004 * 109.46770 * 60.01042 * 14 13 11 42 42 H 1.08997 * 109.47687 * 300.00275 * 15 14 13 43 43 H 1.09002 * 109.47633 * 60.00402 * 15 14 13 44 44 H 0.97002 * 119.99980 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0689 2.4954 6 6 2.3448 1.4245 2.4925 7 6 1.9405 2.2144 3.7389 8 6 2.3411 1.4315 4.9909 9 6 1.6316 0.0761 4.9937 10 6 2.0354 -0.7136 3.7477 11 6 2.0324 -0.7103 -1.2305 12 8 2.7271 -1.6927 -1.1197 13 8 1.7035 -0.2549 -2.4496 14 6 2.2180 -0.9925 -3.5897 15 6 1.7421 -0.3287 -4.8833 16 6 2.2755 -1.0944 -6.0666 17 1 2.8920 -1.9675 -5.9114 18 6 1.9766 -0.6804 -7.3473 19 7 1.2264 0.3831 -7.5363 20 14 2.6384 -1.6293 -8.8140 21 1 2.1415 -3.0278 -8.7639 22 1 2.1765 -0.9851 -10.0697 23 1 4.1229 -1.6296 -8.7744 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6055 -1.7198 1.2951 28 1 3.1264 -0.7994 1.2056 29 1 0.5563 0.2236 2.4928 30 1 3.4238 1.2698 2.4950 31 1 2.0598 1.9819 1.6003 32 1 0.8616 2.3690 3.7368 33 1 2.4464 3.1798 3.7370 34 1 2.0535 1.9945 5.8789 35 1 3.4201 1.2769 4.9930 36 1 0.5526 0.2307 4.9917 37 1 1.9167 -0.4814 5.8860 38 1 1.5299 -1.6793 3.7497 39 1 3.1144 -0.8683 3.7502 40 1 3.3076 -0.9921 -3.5610 41 1 1.8538 -2.0192 -3.5525 42 1 0.6525 -0.3287 -4.9123 43 1 2.1065 0.6980 -4.9204 44 1 1.0158 0.6741 -8.4374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172052307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:06 Heat of formation + Delta-G solvation = -144.416091 kcal Electronic energy + Delta-G solvation = -20514.988507 eV Core-core repulsion = 17430.136909 eV Total energy + Delta-G solvation = -3084.851599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21642 -38.95921 -36.24407 -34.90307 -33.32748 -31.21401 -30.86714 -30.08690 -26.43570 -25.38576 -23.89747 -22.83762 -21.51718 -20.77638 -19.97891 -19.41758 -17.33185 -16.35625 -15.96380 -15.90670 -15.34822 -15.00638 -14.53534 -14.34116 -14.26097 -13.86327 -13.40668 -12.95629 -12.92724 -12.43189 -12.37345 -12.26876 -11.99669 -11.96485 -11.38400 -11.34430 -11.19980 -11.14343 -11.01180 -10.88907 -10.71513 -10.68220 -10.54064 -10.25834 -10.12595 -10.04824 -9.61095 -9.54832 -9.29276 -8.43555 -6.09769 -4.14156 2.64130 3.22194 3.30401 3.34361 3.38859 4.38329 4.42664 4.45085 4.53658 4.77464 4.85674 4.99484 5.04841 5.11025 5.20824 5.26637 5.30230 5.30963 5.32763 5.41712 5.48818 5.62580 5.75252 5.77659 5.80341 5.83083 5.92575 5.93842 5.98235 6.06289 6.07086 6.11541 6.13957 6.17692 6.25432 6.36686 6.66094 7.06102 7.57169 7.63623 7.87864 8.21861 8.31436 8.91229 9.50133 11.01753 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.050557 B = 0.002832 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.695315 B = 9884.376507 C =10076.598121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.107 0.893 4 C -0.100 4.100 5 C -0.087 4.087 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.114 4.114 11 C 0.457 3.543 12 O -0.520 6.520 13 O -0.357 6.357 14 C 0.075 3.925 15 C 0.025 3.975 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 2.592 24.279 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.124 0.876 4 C -0.137 4.137 5 C -0.106 4.106 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.152 4.152 11 C 0.300 3.700 12 O -0.410 6.410 13 O -0.273 6.273 14 C 0.002 3.998 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.712 2.408 24.109 24.240 hybrid contribution 0.471 -0.592 -0.973 1.233 sum -0.241 1.816 23.136 23.208 Atomic orbital electron populations 1.21811 0.92289 1.02891 1.03268 1.21079 0.98226 1.01034 0.90162 0.87552 1.21530 1.01935 0.98862 0.91392 1.21229 1.00605 0.94858 0.93886 1.21690 1.00547 0.95651 0.97861 1.21531 1.01191 0.98327 0.94635 1.21542 1.00419 0.96091 0.97725 1.21518 1.00353 0.96023 0.97756 1.21559 1.01432 0.98334 0.93854 1.23642 0.77570 0.82956 0.85860 1.90612 1.36263 1.26303 1.87792 1.86522 1.69353 1.56248 1.15147 1.23611 0.98086 0.95168 0.82940 1.19153 0.97779 0.96794 0.87468 1.20953 1.32556 1.12626 0.90379 0.92346 1.24980 0.94986 0.95111 0.99064 1.69963 1.36868 1.24003 1.22065 0.86531 0.79375 0.80006 0.81382 1.20067 1.21108 1.20060 0.90904 0.92217 0.91207 0.91090 0.90972 0.90622 0.91870 0.91540 0.92032 0.92151 0.92368 0.92108 0.92081 0.92258 0.91953 0.91931 0.92455 0.92450 0.95395 0.95396 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.88 37.16 0.33 -1.27 16 2 C -0.09 -1.08 2.69 -91.77 -0.25 -1.33 16 3 H 0.11 1.20 6.34 -51.93 -0.33 0.87 16 4 C -0.10 -1.10 3.50 -26.73 -0.09 -1.20 16 5 C -0.09 -0.75 2.06 -90.62 -0.19 -0.93 16 6 C -0.12 -0.99 4.97 -26.73 -0.13 -1.12 16 7 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 8 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 9 C -0.12 -0.83 5.92 -26.76 -0.16 -0.99 16 10 C -0.11 -0.91 5.20 -26.76 -0.14 -1.05 16 11 C 0.46 8.12 7.26 36.00 0.26 8.38 16 12 O -0.52 -10.53 15.67 -18.76 -0.29 -10.82 16 13 O -0.36 -7.28 10.11 -39.26 -0.40 -7.68 16 14 C 0.07 1.70 5.40 37.15 0.20 1.90 16 15 C 0.03 0.67 5.35 -27.89 -0.15 0.52 16 16 C -0.53 -15.02 9.11 -34.44 -0.31 -15.33 16 17 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 20 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.60 6.46 -51.93 -0.34 0.26 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.88 7.96 -51.93 -0.41 0.46 16 29 H 0.08 0.62 6.34 -51.93 -0.33 0.29 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.55 6.46 -51.93 -0.34 0.22 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 41 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -30.88 347.42 -8.83 -39.71 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -8.05 Total: -4.36 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.04 Total: -12.78 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.85 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.69 Total: -18.50 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.88 -8.83 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172052307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.705 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds