Wall clock time and date at job start Mon Mar 30 2020 01:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46828 * 2 1 4 4 C 1.52996 * 109.47352 * 119.99892 * 2 1 3 5 5 C 1.53004 * 109.47336 * 295.00605 * 4 2 1 6 6 C 1.53005 * 109.46566 * 294.99953 * 5 4 2 7 7 C 1.53005 * 109.46909 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46898 * 59.99466 * 7 6 5 9 9 C 1.52992 * 109.47358 * 300.00101 * 8 7 6 10 10 C 1.52993 * 109.47268 * 174.99936 * 5 4 2 11 11 C 1.50697 * 109.47194 * 240.00529 * 2 1 3 12 12 O 1.20833 * 119.99747 * 240.00031 * 11 2 1 13 13 O 1.34230 * 120.00262 * 59.71653 * 11 2 1 14 14 C 1.45202 * 116.99836 * 180.27336 * 13 11 2 15 15 C 1.52994 * 109.46919 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47473 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99561 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00335 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00015 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99790 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46972 * 60.00315 * 20 18 16 22 22 H 1.48502 * 109.47205 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47336 * 299.99813 * 20 18 16 24 24 H 1.09001 * 109.47378 * 60.00060 * 1 2 3 25 25 H 1.09004 * 109.46828 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47167 * 299.99666 * 1 2 3 27 27 H 1.09000 * 109.47046 * 55.00126 * 4 2 1 28 28 H 1.08999 * 109.47456 * 175.00152 * 4 2 1 29 29 H 1.09002 * 109.47073 * 54.99439 * 5 4 2 30 30 H 1.09002 * 109.47005 * 299.99528 * 6 5 4 31 31 H 1.08993 * 109.47582 * 59.99931 * 6 5 4 32 32 H 1.08995 * 109.46632 * 299.99888 * 7 6 5 33 33 H 1.08997 * 109.46805 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.46808 * 179.97438 * 8 7 6 35 35 H 1.08995 * 109.47134 * 60.00730 * 8 7 6 36 36 H 1.08996 * 109.47475 * 299.99843 * 9 8 7 37 37 H 1.09007 * 109.47129 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47387 * 299.99673 * 10 5 4 39 39 H 1.09002 * 109.47480 * 59.99752 * 10 5 4 40 40 H 1.08998 * 109.47630 * 300.00638 * 14 13 11 41 41 H 1.09004 * 109.46770 * 60.01042 * 14 13 11 42 42 H 1.08997 * 109.47687 * 300.00275 * 15 14 13 43 43 H 1.09002 * 109.47633 * 60.00402 * 15 14 13 44 44 H 0.97002 * 119.99980 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0689 2.4954 6 6 2.3448 1.4245 2.4925 7 6 1.9405 2.2144 3.7389 8 6 2.3411 1.4315 4.9909 9 6 1.6316 0.0761 4.9937 10 6 2.0354 -0.7136 3.7477 11 6 2.0324 -0.7103 -1.2305 12 8 2.7271 -1.6927 -1.1197 13 8 1.7035 -0.2549 -2.4496 14 6 2.2180 -0.9925 -3.5897 15 6 1.7421 -0.3287 -4.8833 16 6 2.2755 -1.0944 -6.0666 17 1 2.8920 -1.9675 -5.9114 18 6 1.9766 -0.6804 -7.3473 19 7 1.2264 0.3831 -7.5363 20 14 2.6384 -1.6293 -8.8140 21 1 2.1415 -3.0278 -8.7639 22 1 2.1765 -0.9851 -10.0697 23 1 4.1229 -1.6296 -8.7744 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6055 -1.7198 1.2951 28 1 3.1264 -0.7994 1.2056 29 1 0.5563 0.2236 2.4928 30 1 3.4238 1.2698 2.4950 31 1 2.0598 1.9819 1.6003 32 1 0.8616 2.3690 3.7368 33 1 2.4464 3.1798 3.7370 34 1 2.0535 1.9945 5.8789 35 1 3.4201 1.2769 4.9930 36 1 0.5526 0.2307 4.9917 37 1 1.9167 -0.4814 5.8860 38 1 1.5299 -1.6793 3.7497 39 1 3.1144 -0.8683 3.7502 40 1 3.3076 -0.9921 -3.5610 41 1 1.8538 -2.0192 -3.5525 42 1 0.6525 -0.3287 -4.9123 43 1 2.1065 0.6980 -4.9204 44 1 1.0158 0.6741 -8.4374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172052307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:05 Heat of formation + Delta-G solvation = -159.102370 kcal Electronic energy + Delta-G solvation = -20515.625352 eV Core-core repulsion = 17430.136909 eV Total energy + Delta-G solvation = -3085.488444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64554 -39.76903 -37.80185 -35.91897 -35.45007 -32.47167 -31.73743 -31.40561 -27.31769 -27.25165 -25.18575 -23.50955 -22.99670 -22.19575 -20.83208 -20.35767 -18.96061 -18.16150 -17.65822 -17.31603 -16.53958 -16.10226 -15.96852 -15.18757 -15.01393 -14.86443 -14.54524 -14.37905 -14.26070 -14.06846 -13.30273 -13.15822 -13.05740 -13.01559 -12.78515 -12.72264 -12.59957 -12.57206 -12.19865 -12.03324 -11.92895 -11.81115 -11.60751 -11.52823 -11.47946 -11.30563 -11.10340 -10.88037 -10.75377 -10.62584 -8.28566 -6.42211 1.18362 1.39674 1.43530 1.51362 1.77842 2.39136 3.05573 3.57351 3.65792 3.78933 3.95011 4.01407 4.10913 4.19070 4.21742 4.29245 4.36740 4.51199 4.55061 4.65324 4.66887 4.68068 4.71494 4.80014 4.87830 4.90930 4.95164 5.12135 5.18568 5.21612 5.25438 5.29115 5.33198 5.37996 5.42871 5.44206 5.46179 5.52942 5.58132 5.68530 5.73362 6.04740 6.69671 6.75599 7.27614 8.83920 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.050557 B = 0.002832 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.695315 B = 9884.376507 C =10076.598121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 H 0.124 0.876 4 C -0.093 4.093 5 C -0.079 4.079 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.121 4.121 9 C -0.117 4.117 10 C -0.115 4.115 11 C 0.452 3.548 12 O -0.546 6.546 13 O -0.364 6.364 14 C 0.089 3.911 15 C 0.032 3.968 16 C -0.553 4.553 17 H 0.064 0.936 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.974 3.026 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.266 1.266 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.007 0.993 43 H 0.006 0.994 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 2.533 25.282 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 H 0.142 0.858 4 C -0.131 4.131 5 C -0.097 4.097 6 C -0.159 4.159 7 C -0.155 4.155 8 C -0.158 4.158 9 C -0.154 4.154 10 C -0.152 4.152 11 C 0.297 3.703 12 O -0.437 6.437 13 O -0.281 6.281 14 C 0.016 3.984 15 C -0.005 4.005 16 C -0.591 4.591 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.797 3.203 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.191 1.191 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.858 2.350 25.140 25.264 hybrid contribution 0.513 -0.552 -1.214 1.429 sum -0.344 1.798 23.926 23.996 Atomic orbital electron populations 1.21838 0.90682 1.03071 1.04353 1.21277 0.99381 1.01300 0.87698 0.85795 1.21504 1.00921 0.98852 0.91827 1.21182 1.01232 0.94649 0.92679 1.21704 1.00092 0.95558 0.98574 1.21523 1.01603 0.98293 0.94091 1.21551 1.00160 0.96131 0.97978 1.21504 1.00679 0.95912 0.97301 1.21558 1.01036 0.98531 0.94112 1.24785 0.76738 0.82813 0.85956 1.90597 1.37506 1.27684 1.87893 1.86525 1.69628 1.56200 1.15728 1.23130 0.97784 0.94722 0.82758 1.18960 0.96252 0.95840 0.89432 1.21348 1.33081 1.13168 0.91474 0.91827 1.25968 0.94972 0.96010 1.02289 1.70084 1.37848 1.25500 1.23111 0.85374 0.78997 0.78683 0.77248 1.19050 1.20322 1.19059 0.91998 0.92532 0.87931 0.91811 0.92397 0.89439 0.92641 0.91509 0.91399 0.91828 0.91446 0.92578 0.91503 0.91680 0.91887 0.92651 0.92511 0.92495 0.97497 0.97535 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.88 71.98 0.64 -2.25 16 2 C -0.08 -1.86 2.69 -11.54 -0.03 -1.90 16 3 H 0.12 2.58 6.34 -2.38 -0.02 2.57 16 4 C -0.09 -1.97 3.50 30.59 0.11 -1.86 16 5 C -0.08 -1.20 2.06 -10.79 -0.02 -1.22 16 6 C -0.12 -1.79 4.97 30.60 0.15 -1.64 16 7 C -0.12 -1.44 5.92 30.60 0.18 -1.26 16 8 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 9 C -0.12 -1.37 5.92 30.57 0.18 -1.19 16 10 C -0.11 -1.64 5.20 30.57 0.16 -1.48 16 11 C 0.45 16.06 7.26 71.23 0.52 16.58 16 12 O -0.55 -22.27 15.67 21.94 0.34 -21.93 16 13 O -0.36 -15.08 10.11 -51.41 -0.52 -15.60 16 14 C 0.09 4.17 5.40 71.98 0.39 4.56 16 15 C 0.03 1.77 5.35 29.85 0.16 1.93 16 16 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 17 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 18 C 0.01 0.38 5.46 84.65 0.46 0.85 16 19 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 20 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 24 H 0.06 1.41 8.11 -2.39 -0.02 1.39 16 25 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.10 1.42 6.46 -2.39 -0.02 1.41 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.39 7.96 -2.39 -0.02 1.37 16 29 H 0.09 1.15 6.34 -2.39 -0.02 1.14 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.97 6.46 -2.39 -0.02 0.96 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 2.63 8.13 -2.39 -0.02 2.61 16 41 H 0.06 2.63 8.13 -2.38 -0.02 2.61 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -66.42 347.42 6.38 -60.04 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.94 Total: 8.90 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 3.31 Total: -21.77 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.28 Total: -55.63 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.18 Total: -37.53 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.42 6.38 -60.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172052307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.060 kcal (2) G-P(sol) polarization free energy of solvation -66.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds