Wall clock time and date at job start Mon Mar 30 2020 01:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46862 * 2 1 4 4 C 1.52999 * 109.46954 * 240.00138 * 2 1 3 5 5 C 1.52993 * 109.47213 * 65.56997 * 4 2 1 6 6 C 1.53004 * 109.47233 * 185.90261 * 5 4 2 7 7 C 1.52996 * 109.47290 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46983 * 60.00075 * 7 6 5 9 9 C 1.52998 * 109.47267 * 299.99890 * 8 7 6 10 10 C 1.52998 * 109.47655 * 65.89754 * 5 4 2 11 11 C 1.50692 * 109.46958 * 119.99766 * 2 1 3 12 12 O 1.20835 * 119.99961 * 120.00073 * 11 2 1 13 13 O 1.34231 * 120.00539 * 300.00266 * 11 2 1 14 14 C 1.45205 * 117.00312 * 180.02562 * 13 11 2 15 15 C 1.53001 * 109.46882 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.46700 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00365 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00023 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00103 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00104 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47382 * 60.00282 * 20 18 16 22 22 H 1.48505 * 109.46809 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46997 * 299.99812 * 20 18 16 24 24 H 1.09001 * 109.47191 * 294.38463 * 1 2 3 25 25 H 1.09007 * 109.46975 * 54.38576 * 1 2 3 26 26 H 1.08994 * 109.47360 * 174.38259 * 1 2 3 27 27 H 1.08993 * 109.47255 * 305.56166 * 4 2 1 28 28 H 1.09003 * 109.46697 * 185.56276 * 4 2 1 29 29 H 1.09005 * 109.46969 * 305.89742 * 5 4 2 30 30 H 1.09005 * 109.47086 * 59.99580 * 6 5 4 31 31 H 1.09003 * 109.47113 * 299.99990 * 6 5 4 32 32 H 1.08995 * 109.47301 * 299.99682 * 7 6 5 33 33 H 1.09006 * 109.46905 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.47312 * 59.99651 * 8 7 6 35 35 H 1.09003 * 109.47222 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.47120 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.46759 * 300.00100 * 9 8 7 38 38 H 1.09004 * 109.46619 * 60.00680 * 10 5 4 39 39 H 1.08996 * 109.47472 * 300.00164 * 10 5 4 40 40 H 1.09004 * 109.46390 * 299.99977 * 14 13 11 41 41 H 1.08999 * 109.47187 * 59.99492 * 14 13 11 42 42 H 1.08997 * 109.47086 * 299.99601 * 15 14 13 43 43 H 1.09002 * 109.47161 * 60.00164 * 15 14 13 44 44 H 0.96998 * 120.00411 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6475 0.0763 -2.4945 6 6 2.0267 -0.7154 -3.7477 7 6 1.6337 0.0819 -4.9930 8 6 2.3711 1.4225 -4.9940 9 6 1.9919 2.2141 -3.7409 10 6 2.3852 1.4167 -2.4953 11 6 2.0323 -0.7103 1.2304 12 8 2.7270 -1.6928 1.1196 13 8 1.7080 -0.2518 2.4496 14 6 2.2276 -0.9857 3.5897 15 6 1.7565 -0.3185 4.8834 16 6 2.2952 -1.0805 6.0666 17 1 2.9124 -1.9532 5.9114 18 6 2.0013 -0.6631 7.3474 19 7 1.2502 0.3998 7.5365 20 14 2.6697 -1.6073 8.8141 21 1 4.1540 -1.6067 8.7685 22 1 2.2123 -0.9597 10.0698 23 1 2.1736 -3.0063 8.7700 24 1 -0.3633 0.4243 0.9360 25 1 -0.3633 0.5985 -0.8355 26 1 -0.3634 -1.0227 -0.1006 27 1 1.5976 -1.7160 -1.3005 28 1 3.1254 -0.8083 -1.2008 29 1 0.5720 0.2535 -2.4884 30 1 1.5011 -1.6703 -3.7471 31 1 3.1022 -0.8927 -3.7538 32 1 0.5582 0.2588 -4.9867 33 1 1.9043 -0.4820 -5.8857 34 1 3.4467 1.2455 -5.0003 35 1 2.0915 1.9903 -5.8814 36 1 2.5169 3.1693 -3.7419 37 1 0.9163 2.3911 -3.7346 38 1 3.4607 1.2394 -2.5015 39 1 2.1150 1.9807 -1.6026 40 1 1.8642 -2.0128 3.5568 41 1 3.3171 -0.9846 3.5566 42 1 2.1203 0.7085 4.9160 43 1 0.6669 -0.3193 4.9168 44 1 1.0430 0.6933 8.4375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172052311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:08 Heat of formation + Delta-G solvation = -144.761854 kcal Electronic energy + Delta-G solvation = -20512.315908 eV Core-core repulsion = 17427.449316 eV Total energy + Delta-G solvation = -3084.866592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21351 -38.95231 -36.24338 -34.90035 -33.32736 -31.21303 -30.87057 -30.08903 -26.42820 -25.38524 -23.89135 -22.83657 -21.51649 -20.77743 -19.96990 -19.43309 -17.32948 -16.35478 -15.96303 -15.90489 -15.34786 -15.00355 -14.53483 -14.33947 -14.26227 -13.85943 -13.39400 -12.96552 -12.92546 -12.43003 -12.37494 -12.26830 -11.98778 -11.95827 -11.39437 -11.34532 -11.20288 -11.14397 -11.01626 -10.88663 -10.71509 -10.68234 -10.54463 -10.25721 -10.12743 -10.04999 -9.61138 -9.54767 -9.29345 -8.43553 -6.09773 -4.14176 2.64128 3.22019 3.30389 3.34341 3.38840 4.38330 4.42671 4.45299 4.53620 4.77428 4.85964 4.99766 5.04974 5.11037 5.21110 5.26601 5.30055 5.30870 5.32761 5.41867 5.48695 5.63022 5.75287 5.78223 5.80389 5.82307 5.92655 5.93717 5.98131 6.06208 6.07264 6.11520 6.14075 6.17661 6.25373 6.36624 6.66025 7.06087 7.57124 7.63601 7.87838 8.21833 8.31408 8.91208 9.50107 11.01742 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.050326 B = 0.002831 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.238687 B = 9887.038741 C =10071.415010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.107 0.893 4 C -0.100 4.100 5 C -0.087 4.087 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.120 4.120 11 C 0.457 3.543 12 O -0.520 6.520 13 O -0.357 6.357 14 C 0.075 3.925 15 C 0.025 3.975 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 2.548 -24.271 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.125 0.875 4 C -0.137 4.137 5 C -0.106 4.106 6 C -0.152 4.152 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.157 4.157 11 C 0.300 3.700 12 O -0.410 6.410 13 O -0.273 6.273 14 C 0.002 3.998 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.733 2.365 -24.101 24.228 hybrid contribution 0.474 -0.587 0.970 1.229 sum -0.259 1.778 -23.130 23.200 Atomic orbital electron populations 1.21811 0.92286 1.02765 1.03408 1.21079 0.98228 1.01027 0.90165 0.87539 1.21539 1.01986 0.98795 0.91399 1.21219 1.00570 0.94888 0.93882 1.21573 1.01490 0.98262 0.93857 1.21529 1.00272 0.96088 0.97761 1.21544 1.00363 0.96158 0.97713 1.21537 1.01250 0.98264 0.94633 1.21693 1.00451 0.95729 0.97855 1.23641 0.77574 0.82951 0.85864 1.90613 1.36233 1.26328 1.87794 1.86520 1.69357 1.56265 1.15148 1.23615 0.98011 0.95243 0.82931 1.19153 0.97801 0.96768 0.87464 1.20953 1.32487 1.12697 0.90378 0.92344 1.24982 0.94993 0.95102 0.99064 1.69962 1.36896 1.23977 1.22068 0.86532 0.79392 0.79987 0.81383 1.20063 1.21108 1.20067 0.90866 0.91258 0.92192 0.91094 0.90967 0.90646 0.91960 0.91925 0.92071 0.92261 0.92107 0.92368 0.92155 0.92035 0.91864 0.91566 0.92447 0.92456 0.95397 0.95393 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.80 37.16 0.33 -1.27 16 2 C -0.09 -1.08 2.71 -91.78 -0.25 -1.33 16 3 H 0.11 1.20 6.36 -51.92 -0.33 0.87 16 4 C -0.10 -1.10 3.49 -26.74 -0.09 -1.20 16 5 C -0.09 -0.75 2.07 -90.62 -0.19 -0.94 16 6 C -0.11 -0.91 5.20 -26.73 -0.14 -1.05 16 7 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 8 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 9 C -0.12 -0.87 5.92 -26.71 -0.16 -1.02 16 10 C -0.12 -0.99 4.98 -26.71 -0.13 -1.13 16 11 C 0.46 8.11 7.26 36.00 0.26 8.38 16 12 O -0.52 -10.53 15.66 -18.76 -0.29 -10.82 16 13 O -0.36 -7.29 10.02 -39.26 -0.39 -7.68 16 14 C 0.07 1.70 5.40 37.16 0.20 1.91 16 15 C 0.03 0.67 5.35 -27.88 -0.15 0.52 16 16 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 17 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 20 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.07 0.89 7.98 -51.93 -0.41 0.48 16 25 H 0.07 0.59 6.73 -51.93 -0.35 0.24 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 29 H 0.08 0.62 6.45 -51.93 -0.33 0.28 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.55 6.48 -51.93 -0.34 0.22 16 40 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 41 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -30.87 347.53 -8.84 -39.71 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -8.06 Total: -4.36 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.05 Total: -12.79 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.69 Total: -18.50 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.87 -8.84 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172052311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.050 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds