Wall clock time and date at job start Mon Mar 30 2020 01:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46862 * 2 1 4 4 C 1.52999 * 109.46954 * 240.00138 * 2 1 3 5 5 C 1.52993 * 109.47213 * 65.56997 * 4 2 1 6 6 C 1.53004 * 109.47233 * 185.90261 * 5 4 2 7 7 C 1.52996 * 109.47290 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46983 * 60.00075 * 7 6 5 9 9 C 1.52998 * 109.47267 * 299.99890 * 8 7 6 10 10 C 1.52998 * 109.47655 * 65.89754 * 5 4 2 11 11 C 1.50692 * 109.46958 * 119.99766 * 2 1 3 12 12 O 1.20835 * 119.99961 * 120.00073 * 11 2 1 13 13 O 1.34231 * 120.00539 * 300.00266 * 11 2 1 14 14 C 1.45205 * 117.00312 * 180.02562 * 13 11 2 15 15 C 1.53001 * 109.46882 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.46700 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00365 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00023 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00103 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00104 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47382 * 60.00282 * 20 18 16 22 22 H 1.48505 * 109.46809 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46997 * 299.99812 * 20 18 16 24 24 H 1.09001 * 109.47191 * 294.38463 * 1 2 3 25 25 H 1.09007 * 109.46975 * 54.38576 * 1 2 3 26 26 H 1.08994 * 109.47360 * 174.38259 * 1 2 3 27 27 H 1.08993 * 109.47255 * 305.56166 * 4 2 1 28 28 H 1.09003 * 109.46697 * 185.56276 * 4 2 1 29 29 H 1.09005 * 109.46969 * 305.89742 * 5 4 2 30 30 H 1.09005 * 109.47086 * 59.99580 * 6 5 4 31 31 H 1.09003 * 109.47113 * 299.99990 * 6 5 4 32 32 H 1.08995 * 109.47301 * 299.99682 * 7 6 5 33 33 H 1.09006 * 109.46905 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.47312 * 59.99651 * 8 7 6 35 35 H 1.09003 * 109.47222 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.47120 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.46759 * 300.00100 * 9 8 7 38 38 H 1.09004 * 109.46619 * 60.00680 * 10 5 4 39 39 H 1.08996 * 109.47472 * 300.00164 * 10 5 4 40 40 H 1.09004 * 109.46390 * 299.99977 * 14 13 11 41 41 H 1.08999 * 109.47187 * 59.99492 * 14 13 11 42 42 H 1.08997 * 109.47086 * 299.99601 * 15 14 13 43 43 H 1.09002 * 109.47161 * 60.00164 * 15 14 13 44 44 H 0.96998 * 120.00411 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6475 0.0763 -2.4945 6 6 2.0267 -0.7154 -3.7477 7 6 1.6337 0.0819 -4.9930 8 6 2.3711 1.4225 -4.9940 9 6 1.9919 2.2141 -3.7409 10 6 2.3852 1.4167 -2.4953 11 6 2.0323 -0.7103 1.2304 12 8 2.7270 -1.6928 1.1196 13 8 1.7080 -0.2518 2.4496 14 6 2.2276 -0.9857 3.5897 15 6 1.7565 -0.3185 4.8834 16 6 2.2952 -1.0805 6.0666 17 1 2.9124 -1.9532 5.9114 18 6 2.0013 -0.6631 7.3474 19 7 1.2502 0.3998 7.5365 20 14 2.6697 -1.6073 8.8141 21 1 4.1540 -1.6067 8.7685 22 1 2.2123 -0.9597 10.0698 23 1 2.1736 -3.0063 8.7700 24 1 -0.3633 0.4243 0.9360 25 1 -0.3633 0.5985 -0.8355 26 1 -0.3634 -1.0227 -0.1006 27 1 1.5976 -1.7160 -1.3005 28 1 3.1254 -0.8083 -1.2008 29 1 0.5720 0.2535 -2.4884 30 1 1.5011 -1.6703 -3.7471 31 1 3.1022 -0.8927 -3.7538 32 1 0.5582 0.2588 -4.9867 33 1 1.9043 -0.4820 -5.8857 34 1 3.4467 1.2455 -5.0003 35 1 2.0915 1.9903 -5.8814 36 1 2.5169 3.1693 -3.7419 37 1 0.9163 2.3911 -3.7346 38 1 3.4607 1.2394 -2.5015 39 1 2.1150 1.9807 -1.6026 40 1 1.8642 -2.0128 3.5568 41 1 3.3171 -0.9846 3.5566 42 1 2.1203 0.7085 4.9160 43 1 0.6669 -0.3193 4.9168 44 1 1.0430 0.6933 8.4375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172052311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:08 Heat of formation + Delta-G solvation = -159.427534 kcal Electronic energy + Delta-G solvation = -20512.951859 eV Core-core repulsion = 17427.449316 eV Total energy + Delta-G solvation = -3085.502544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64376 -39.76050 -37.80094 -35.91686 -35.44946 -32.47232 -31.73391 -31.41271 -27.31199 -27.24848 -25.18120 -23.50865 -22.99562 -22.19382 -20.82583 -20.37224 -18.95872 -18.15963 -17.65607 -17.31822 -16.53888 -16.09521 -15.97209 -15.17885 -15.01174 -14.86682 -14.54514 -14.37854 -14.25772 -14.06279 -13.30094 -13.15839 -13.05933 -13.01553 -12.77968 -12.71964 -12.59987 -12.57111 -12.20368 -12.03666 -11.93205 -11.81140 -11.60650 -11.52786 -11.47988 -11.30366 -11.11293 -10.87763 -10.75624 -10.62559 -8.28545 -6.42203 1.18424 1.39670 1.43533 1.51367 1.77721 2.39141 3.05562 3.57810 3.65624 3.79071 3.95024 4.01464 4.10804 4.19069 4.21769 4.29338 4.36898 4.51529 4.55243 4.65996 4.66888 4.68039 4.71233 4.80295 4.87004 4.91495 4.95231 5.11875 5.18518 5.21782 5.25365 5.29224 5.33153 5.37826 5.42654 5.44214 5.46113 5.52949 5.58065 5.68437 5.73379 6.04738 6.69684 6.75641 7.27612 8.83933 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.050326 B = 0.002831 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.238687 B = 9887.038741 C =10071.415010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 H 0.124 0.876 4 C -0.093 4.093 5 C -0.079 4.079 6 C -0.115 4.115 7 C -0.116 4.116 8 C -0.121 4.121 9 C -0.118 4.118 10 C -0.122 4.122 11 C 0.452 3.548 12 O -0.546 6.546 13 O -0.365 6.365 14 C 0.089 3.911 15 C 0.032 3.968 16 C -0.553 4.553 17 H 0.064 0.936 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.974 3.026 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.266 1.266 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.006 0.994 43 H 0.007 0.993 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 2.491 -25.279 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 H 0.142 0.858 4 C -0.131 4.131 5 C -0.097 4.097 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.158 4.158 9 C -0.155 4.155 10 C -0.159 4.159 11 C 0.297 3.703 12 O -0.437 6.437 13 O -0.281 6.281 14 C 0.016 3.984 15 C -0.005 4.005 16 C -0.591 4.591 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.797 3.203 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.191 1.191 24 H 0.078 0.922 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.881 2.308 -25.136 25.258 hybrid contribution 0.516 -0.547 1.213 1.427 sum -0.365 1.761 -23.924 23.991 Atomic orbital electron populations 1.21836 0.90664 1.03346 1.04105 1.21278 0.99396 1.01281 0.87701 0.85801 1.21513 1.00939 0.98821 0.91827 1.21172 1.01209 0.94659 0.92684 1.21572 1.01094 0.98465 0.94111 1.21515 1.00597 0.95972 0.97311 1.21553 1.00103 0.96204 0.97961 1.21529 1.01668 0.98220 0.94093 1.21707 0.99982 0.95659 0.98564 1.24785 0.76746 0.82802 0.85960 1.90597 1.37481 1.27707 1.87895 1.86524 1.69621 1.56225 1.15730 1.23133 0.97718 0.94786 0.82750 1.18961 0.96268 0.95821 0.89429 1.21348 1.33011 1.13239 0.91472 0.91825 1.25970 0.94997 0.95985 1.02289 1.70083 1.37883 1.25468 1.23112 0.85374 0.78998 0.78682 0.77249 1.19058 1.20322 1.19051 0.92198 0.87981 0.92250 0.91775 0.92427 0.89454 0.91877 0.92655 0.91489 0.91680 0.92582 0.91443 0.91838 0.91400 0.92652 0.91547 0.92492 0.92512 0.97535 0.97496 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.80 71.98 0.63 -2.25 16 2 C -0.08 -1.86 2.71 -11.54 -0.03 -1.89 16 3 H 0.12 2.58 6.36 -2.38 -0.02 2.57 16 4 C -0.09 -1.97 3.49 30.59 0.11 -1.86 16 5 C -0.08 -1.20 2.07 -10.80 -0.02 -1.22 16 6 C -0.11 -1.64 5.20 30.59 0.16 -1.48 16 7 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 8 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 9 C -0.12 -1.44 5.92 30.61 0.18 -1.26 16 10 C -0.12 -1.79 4.98 30.61 0.15 -1.64 16 11 C 0.45 16.06 7.26 71.23 0.52 16.57 16 12 O -0.55 -22.27 15.66 21.94 0.34 -21.92 16 13 O -0.36 -15.09 10.02 -51.43 -0.52 -15.60 16 14 C 0.09 4.17 5.40 71.98 0.39 4.56 16 15 C 0.03 1.78 5.35 29.85 0.16 1.94 16 16 C -0.55 -31.90 9.11 25.60 0.23 -31.66 16 17 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 18 C 0.01 0.38 5.46 84.65 0.46 0.85 16 19 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 20 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H 0.06 1.40 7.98 -2.39 -0.02 1.38 16 25 H 0.10 1.41 6.73 -2.38 -0.02 1.40 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.39 7.94 -2.39 -0.02 1.37 16 29 H 0.09 1.15 6.45 -2.38 -0.02 1.14 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.07 0.97 6.48 -2.39 -0.02 0.96 16 40 H 0.06 2.63 8.13 -2.39 -0.02 2.62 16 41 H 0.06 2.63 8.13 -2.39 -0.02 2.61 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -66.42 347.53 6.38 -60.04 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.94 Total: 8.92 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 3.30 Total: -21.78 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.28 Total: -55.63 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.17 Total: -37.52 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.42 6.38 -60.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172052311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.389 kcal (2) G-P(sol) polarization free energy of solvation -66.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds