Wall clock time and date at job start Mon Mar 30 2020 00:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47729 * 2 1 4 4 H 1.09007 * 109.46579 * 53.75031 * 3 2 1 5 5 C 1.52991 * 109.47414 * 173.75231 * 3 2 1 6 6 C 1.52997 * 109.47338 * 293.98593 * 5 3 2 7 7 C 1.54890 * 110.75727 * 175.26220 * 6 5 3 8 8 C 1.54275 * 104.31148 * 156.32223 * 7 6 5 9 9 C 1.53872 * 106.59997 * 336.32280 * 8 7 6 10 10 C 1.54267 * 106.59749 * 359.97438 * 9 8 7 11 11 C 1.50703 * 109.47078 * 293.75773 * 3 2 1 12 12 O 1.20827 * 119.99743 * 239.99670 * 11 3 2 13 13 O 1.34223 * 120.00251 * 59.99367 * 11 3 2 14 14 C 1.45207 * 117.00159 * 180.02562 * 13 11 3 15 15 C 1.53001 * 109.47097 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46952 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99864 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00119 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99908 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00122 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47427 * 89.99902 * 20 18 16 22 22 H 1.48501 * 109.47263 * 209.99936 * 20 18 16 23 23 H 1.48504 * 109.47426 * 330.00036 * 20 18 16 24 24 H 1.08994 * 109.47473 * 186.99875 * 1 2 3 25 25 H 1.09006 * 109.46903 * 306.99955 * 1 2 3 26 26 H 1.09006 * 109.47054 * 66.99203 * 1 2 3 27 27 H 1.09002 * 109.46745 * 239.99839 * 2 1 3 28 28 H 1.09004 * 109.46833 * 120.00471 * 2 1 3 29 29 H 1.08999 * 109.47388 * 173.98179 * 5 3 2 30 30 H 1.08998 * 109.46992 * 53.98379 * 5 3 2 31 31 H 1.08997 * 110.81834 * 51.92334 * 6 5 3 32 32 H 1.08999 * 110.48506 * 37.57893 * 7 6 5 33 33 H 1.09001 * 110.48567 * 275.06480 * 7 6 5 34 34 H 1.08995 * 110.02995 * 95.60732 * 8 7 6 35 35 H 1.09003 * 110.02640 * 217.03445 * 8 7 6 36 36 H 1.09000 * 110.03280 * 119.28157 * 9 8 7 37 37 H 1.09001 * 110.03379 * 240.66852 * 9 8 7 38 38 H 1.09004 * 110.48754 * 142.28815 * 10 9 8 39 39 H 1.09001 * 110.48786 * 264.79722 * 10 9 8 40 40 H 1.09000 * 109.46535 * 300.00151 * 14 13 11 41 41 H 1.08991 * 109.46825 * 59.99825 * 14 13 11 42 42 H 1.09005 * 109.46795 * 299.99908 * 15 14 13 43 43 H 1.08995 * 109.47403 * 59.99322 * 15 14 13 44 44 H 0.96995 * 120.00260 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5883 1.9875 0.8288 5 6 3.5620 1.4452 0.1570 6 6 3.9330 0.9079 1.5406 7 6 5.4700 0.7862 1.6882 8 6 5.7128 0.8442 3.2106 9 6 4.5027 1.5726 3.8213 10 6 3.5671 1.9323 2.6486 11 6 1.6680 2.1069 -1.3004 12 8 2.5315 2.5383 -2.0272 13 8 0.3773 2.2193 -1.6514 14 6 0.0928 2.8701 -2.9179 15 6 -1.4199 2.9055 -3.1447 16 6 -1.7151 3.5815 -4.4588 17 1 -0.9049 3.9495 -5.0708 18 6 -3.0196 3.7301 -4.8798 19 7 -4.0062 3.2815 -4.1348 20 14 -3.3855 4.5674 -6.5090 21 1 -3.4133 3.5520 -7.5922 22 1 -4.7046 5.2451 -6.4320 23 1 -2.3297 5.5708 -6.7981 24 1 -0.3634 -1.0199 0.1252 25 1 -0.3633 0.6185 0.8208 26 1 -0.3633 0.4017 -0.9460 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9365 2.4632 0.0501 30 1 4.0075 0.8118 -0.6101 31 1 3.4499 -0.0514 1.7260 32 1 5.9681 1.6182 1.1905 33 1 5.8182 -0.1637 1.2824 34 1 5.7846 -0.1650 3.6160 35 1 6.6276 1.3979 3.4219 36 1 3.9872 0.9168 4.5229 37 1 4.8302 2.4794 4.3297 38 1 2.5241 1.8177 2.9436 39 1 3.7565 2.9503 2.3079 40 1 0.4808 3.8885 -2.8982 41 1 0.5690 2.3155 -3.7264 42 1 -1.8082 1.8871 -3.1641 43 1 -1.8957 3.4602 -2.3361 44 1 -4.9239 3.3864 -4.4308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172052543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:00 Heat of formation + Delta-G solvation = -139.327924 kcal Electronic energy + Delta-G solvation = -20736.449925 eV Core-core repulsion = 17651.818965 eV Total energy + Delta-G solvation = -3084.630959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25119 -38.59592 -36.18805 -35.25103 -33.31582 -31.19707 -30.23132 -28.90653 -27.78025 -25.20495 -23.61681 -22.72270 -20.95731 -20.57624 -20.24925 -19.30949 -17.34153 -16.44670 -16.15785 -16.03096 -15.63140 -14.86833 -14.49201 -14.34402 -13.97495 -13.70730 -13.45691 -13.03555 -12.84298 -12.52917 -12.35877 -11.99918 -11.54986 -11.41602 -11.30174 -11.28400 -11.15090 -10.95487 -10.91275 -10.73495 -10.69704 -10.69295 -10.63960 -10.52682 -10.34549 -10.04184 -9.58726 -9.55052 -9.27020 -8.43820 -6.10020 -4.14164 2.64997 3.22277 3.28625 3.34937 3.39929 4.31348 4.38632 4.43390 4.52719 4.78816 4.82471 5.01123 5.17252 5.22283 5.26443 5.26715 5.33778 5.43622 5.46051 5.52289 5.56970 5.65547 5.70589 5.75792 5.79832 5.87334 5.96780 6.01576 6.08169 6.09225 6.12093 6.14729 6.18340 6.27984 6.33027 6.62413 6.69463 7.07764 7.57380 7.63746 7.87910 8.22206 8.32383 8.91459 9.50203 11.01486 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.041830 B = 0.003146 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.214709 B = 8897.084695 C = 9150.280162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.113 4.113 3 C -0.082 4.082 4 H 0.105 0.895 5 C -0.096 4.096 6 C -0.094 4.094 7 C -0.121 4.121 8 C -0.125 4.125 9 C -0.125 4.125 10 C -0.124 4.124 11 C 0.458 3.542 12 O -0.521 6.521 13 O -0.351 6.351 14 C 0.072 3.928 15 C 0.026 3.974 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.491 -6.815 15.277 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.150 4.150 3 C -0.101 4.101 4 H 0.123 0.877 5 C -0.133 4.133 6 C -0.112 4.112 7 C -0.158 4.158 8 C -0.162 4.162 9 C -0.163 4.163 10 C -0.161 4.161 11 C 0.301 3.699 12 O -0.410 6.410 13 O -0.267 6.267 14 C -0.001 4.001 15 C -0.011 4.011 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.514 -6.679 15.038 22.615 hybrid contribution -0.244 0.574 -1.007 1.184 sum 15.269 -6.106 14.031 21.617 Atomic orbital electron populations 1.21968 0.94314 1.01406 1.04304 1.21539 0.97335 0.93568 1.02600 1.21180 0.97571 0.97680 0.93714 0.87699 1.21460 0.92664 1.02654 0.96563 1.22291 0.95721 0.99132 0.94033 1.22406 0.95749 1.01835 0.95820 1.22125 0.98136 1.00310 0.95672 1.22123 0.96214 1.00052 0.97881 1.22550 0.99315 0.99254 0.95024 1.23613 0.81662 0.76617 0.88008 1.90611 1.50695 1.46278 1.53443 1.86579 1.26594 1.71536 1.41999 1.23616 1.01128 0.95364 0.79950 1.19148 0.86060 0.98526 0.97379 1.20995 0.92449 1.38761 1.04230 0.92325 1.24978 0.96126 0.95524 0.97514 1.69971 0.99335 1.45982 1.37588 0.86484 0.77752 0.79649 0.83502 1.20483 1.21047 1.19735 0.92920 0.92555 0.90134 0.91699 0.90670 0.90825 0.91079 0.90038 0.91470 0.91755 0.92060 0.92099 0.92006 0.92072 0.91518 0.91418 0.92516 0.92503 0.95415 0.95420 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.36 37.16 0.35 -1.73 16 2 C -0.11 -1.28 5.29 -26.73 -0.14 -1.42 16 3 C -0.08 -1.04 2.25 -91.78 -0.21 -1.24 16 4 H 0.11 1.21 7.40 -51.93 -0.38 0.82 16 5 C -0.10 -1.06 3.54 -26.74 -0.09 -1.16 16 6 C -0.09 -0.81 2.77 -88.42 -0.25 -1.06 16 7 C -0.12 -0.97 6.26 -25.07 -0.16 -1.13 16 8 C -0.12 -0.90 6.80 -25.61 -0.17 -1.08 16 9 C -0.13 -0.93 6.80 -25.61 -0.17 -1.10 16 10 C -0.12 -1.04 5.67 -24.87 -0.14 -1.18 16 11 C 0.46 8.03 7.24 36.01 0.26 8.29 16 12 O -0.52 -10.46 15.65 -18.75 -0.29 -10.75 16 13 O -0.35 -6.95 7.55 -39.24 -0.30 -7.24 16 14 C 0.07 1.62 5.41 37.16 0.20 1.82 16 15 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 16 C -0.53 -14.90 9.11 -34.44 -0.31 -15.22 16 17 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 20 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 26 H 0.08 1.28 5.93 -51.93 -0.31 0.97 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.67 6.23 -51.93 -0.32 0.35 16 29 H 0.07 0.90 7.78 -51.93 -0.40 0.49 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.67 6.27 -51.93 -0.33 0.34 16 32 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.54 7.97 -51.93 -0.41 0.13 16 39 H 0.07 0.60 7.96 -51.93 -0.41 0.19 16 40 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 41 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -30.48 348.12 -8.74 -39.22 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -8.03 Total: -3.23 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.09 Total: -14.04 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.74 Total: -25.71 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.59 Total: -18.00 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.48 -8.74 -39.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172052543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.105 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds