Wall clock time and date at job start Mon Mar 30 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47729 * 2 1 4 4 H 1.09007 * 109.46579 * 53.75031 * 3 2 1 5 5 C 1.52991 * 109.47414 * 173.75231 * 3 2 1 6 6 C 1.52997 * 109.47338 * 293.98593 * 5 3 2 7 7 C 1.54890 * 110.75727 * 175.26220 * 6 5 3 8 8 C 1.54275 * 104.31148 * 156.32223 * 7 6 5 9 9 C 1.53872 * 106.59997 * 336.32280 * 8 7 6 10 10 C 1.54267 * 106.59749 * 359.97438 * 9 8 7 11 11 C 1.50703 * 109.47078 * 293.75773 * 3 2 1 12 12 O 1.20827 * 119.99743 * 239.99670 * 11 3 2 13 13 O 1.34223 * 120.00251 * 59.99367 * 11 3 2 14 14 C 1.45207 * 117.00159 * 180.02562 * 13 11 3 15 15 C 1.53001 * 109.47097 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46952 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99864 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00119 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99908 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00122 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47427 * 89.99902 * 20 18 16 22 22 H 1.48501 * 109.47263 * 209.99936 * 20 18 16 23 23 H 1.48504 * 109.47426 * 330.00036 * 20 18 16 24 24 H 1.08994 * 109.47473 * 186.99875 * 1 2 3 25 25 H 1.09006 * 109.46903 * 306.99955 * 1 2 3 26 26 H 1.09006 * 109.47054 * 66.99203 * 1 2 3 27 27 H 1.09002 * 109.46745 * 239.99839 * 2 1 3 28 28 H 1.09004 * 109.46833 * 120.00471 * 2 1 3 29 29 H 1.08999 * 109.47388 * 173.98179 * 5 3 2 30 30 H 1.08998 * 109.46992 * 53.98379 * 5 3 2 31 31 H 1.08997 * 110.81834 * 51.92334 * 6 5 3 32 32 H 1.08999 * 110.48506 * 37.57893 * 7 6 5 33 33 H 1.09001 * 110.48567 * 275.06480 * 7 6 5 34 34 H 1.08995 * 110.02995 * 95.60732 * 8 7 6 35 35 H 1.09003 * 110.02640 * 217.03445 * 8 7 6 36 36 H 1.09000 * 110.03280 * 119.28157 * 9 8 7 37 37 H 1.09001 * 110.03379 * 240.66852 * 9 8 7 38 38 H 1.09004 * 110.48754 * 142.28815 * 10 9 8 39 39 H 1.09001 * 110.48786 * 264.79722 * 10 9 8 40 40 H 1.09000 * 109.46535 * 300.00151 * 14 13 11 41 41 H 1.08991 * 109.46825 * 59.99825 * 14 13 11 42 42 H 1.09005 * 109.46795 * 299.99908 * 15 14 13 43 43 H 1.08995 * 109.47403 * 59.99322 * 15 14 13 44 44 H 0.96995 * 120.00260 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5883 1.9875 0.8288 5 6 3.5620 1.4452 0.1570 6 6 3.9330 0.9079 1.5406 7 6 5.4700 0.7862 1.6882 8 6 5.7128 0.8442 3.2106 9 6 4.5027 1.5726 3.8213 10 6 3.5671 1.9323 2.6486 11 6 1.6680 2.1069 -1.3004 12 8 2.5315 2.5383 -2.0272 13 8 0.3773 2.2193 -1.6514 14 6 0.0928 2.8701 -2.9179 15 6 -1.4199 2.9055 -3.1447 16 6 -1.7151 3.5815 -4.4588 17 1 -0.9049 3.9495 -5.0708 18 6 -3.0196 3.7301 -4.8798 19 7 -4.0062 3.2815 -4.1348 20 14 -3.3855 4.5674 -6.5090 21 1 -3.4133 3.5520 -7.5922 22 1 -4.7046 5.2451 -6.4320 23 1 -2.3297 5.5708 -6.7981 24 1 -0.3634 -1.0199 0.1252 25 1 -0.3633 0.6185 0.8208 26 1 -0.3633 0.4017 -0.9460 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9365 2.4632 0.0501 30 1 4.0075 0.8118 -0.6101 31 1 3.4499 -0.0514 1.7260 32 1 5.9681 1.6182 1.1905 33 1 5.8182 -0.1637 1.2824 34 1 5.7846 -0.1650 3.6160 35 1 6.6276 1.3979 3.4219 36 1 3.9872 0.9168 4.5229 37 1 4.8302 2.4794 4.3297 38 1 2.5241 1.8177 2.9436 39 1 3.7565 2.9503 2.3079 40 1 0.4808 3.8885 -2.8982 41 1 0.5690 2.3155 -3.7264 42 1 -1.8082 1.8871 -3.1641 43 1 -1.8957 3.4602 -2.3361 44 1 -4.9239 3.3864 -4.4308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172052543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:59 Heat of formation + Delta-G solvation = -153.558279 kcal Electronic energy + Delta-G solvation = -20737.066999 eV Core-core repulsion = 17651.818965 eV Total energy + Delta-G solvation = -3085.248034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68025 -39.41929 -37.73100 -36.30857 -35.43149 -32.36411 -31.97002 -29.52733 -28.74874 -27.10805 -24.73543 -23.90659 -22.78164 -21.56496 -21.03811 -20.25229 -18.95342 -18.16962 -17.78706 -17.24217 -16.69133 -16.51599 -15.57084 -15.52078 -14.99147 -14.71521 -14.58221 -14.37752 -14.35310 -14.05815 -13.45189 -13.18342 -13.10301 -12.89161 -12.60994 -12.58723 -12.33023 -12.09620 -12.02997 -11.89564 -11.84315 -11.78404 -11.63938 -11.48813 -11.43399 -11.30157 -11.25248 -11.18555 -11.03782 -10.62417 -8.28364 -6.41634 1.20758 1.39552 1.41429 1.52526 1.79662 2.39136 3.05836 3.53868 3.62645 3.77655 3.84297 3.92313 4.08903 4.19342 4.21561 4.30770 4.41857 4.54326 4.57789 4.66704 4.67692 4.70437 4.76880 4.81486 4.88365 4.92155 5.03088 5.12105 5.16736 5.16801 5.19881 5.25762 5.29637 5.34103 5.41115 5.45891 5.52172 5.57361 5.61578 5.64551 5.74832 6.05791 6.70791 6.78380 7.28138 8.84203 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.041830 B = 0.003146 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.214709 B = 8897.084695 C = 9150.280162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.107 4.107 3 C -0.074 4.074 4 H 0.121 0.879 5 C -0.089 4.089 6 C -0.087 4.087 7 C -0.122 4.122 8 C -0.123 4.123 9 C -0.124 4.124 10 C -0.127 4.127 11 C 0.453 3.547 12 O -0.548 6.548 13 O -0.354 6.354 14 C 0.087 3.913 15 C 0.035 3.965 16 C -0.552 4.552 17 H 0.062 0.938 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.972 3.028 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.264 1.264 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.007 0.993 43 H 0.006 0.994 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.310 -7.383 16.036 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.144 4.144 3 C -0.093 4.093 4 H 0.139 0.861 5 C -0.127 4.127 6 C -0.105 4.105 7 C -0.160 4.160 8 C -0.161 4.161 9 C -0.162 4.162 10 C -0.165 4.165 11 C 0.298 3.702 12 O -0.439 6.439 13 O -0.270 6.270 14 C 0.014 3.986 15 C -0.002 4.002 16 C -0.590 4.590 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.796 3.204 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.189 1.189 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.349 -7.255 15.812 23.874 hybrid contribution -0.473 0.726 -1.185 1.469 sum 15.876 -6.528 14.627 22.553 Atomic orbital electron populations 1.21952 0.95432 1.02261 1.02394 1.21563 0.96181 0.92563 1.04079 1.21370 0.98773 0.98236 0.90875 0.86076 1.21424 0.91194 1.01902 0.98164 1.22261 0.96386 0.99598 0.92287 1.22416 0.95100 1.01877 0.96561 1.22127 0.98202 1.00912 0.94861 1.22127 0.96091 1.00374 0.97597 1.22577 0.99957 0.98625 0.95312 1.24736 0.80277 0.75912 0.89286 1.90596 1.51019 1.47529 1.54715 1.86616 1.28463 1.71427 1.40527 1.23117 0.98526 0.95527 0.81458 1.18935 0.88386 0.96638 0.96277 1.21381 0.93091 1.39357 1.05139 0.91950 1.25949 0.95788 0.95956 1.01497 1.70087 0.99906 1.46892 1.39605 0.85339 0.77837 0.78705 0.78522 1.19487 1.20244 1.18854 0.91314 0.91945 0.93902 0.92203 0.87102 0.92304 0.91699 0.88648 0.92350 0.91080 0.91125 0.91826 0.91150 0.91934 0.90973 0.92426 0.92719 0.92681 0.97502 0.97588 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 9.36 71.98 0.67 -3.31 16 2 C -0.11 -2.19 5.29 30.59 0.16 -2.03 16 3 C -0.07 -1.76 2.25 -11.54 -0.03 -1.79 16 4 H 0.12 2.56 7.40 -2.38 -0.02 2.54 16 5 C -0.09 -1.87 3.54 30.59 0.11 -1.76 16 6 C -0.09 -1.31 2.77 -9.37 -0.03 -1.34 16 7 C -0.12 -1.72 6.26 31.67 0.20 -1.52 16 8 C -0.12 -1.49 6.80 31.32 0.21 -1.28 16 9 C -0.12 -1.55 6.80 31.32 0.21 -1.34 16 10 C -0.13 -1.87 5.67 31.80 0.18 -1.69 16 11 C 0.45 15.96 7.24 71.24 0.52 16.48 16 12 O -0.55 -22.27 15.65 21.96 0.34 -21.93 16 13 O -0.35 -14.36 7.55 -51.35 -0.39 -14.75 16 14 C 0.09 4.04 5.41 71.98 0.39 4.43 16 15 C 0.03 1.90 5.35 29.85 0.16 2.06 16 16 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 17 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 18 C 0.01 0.41 5.46 84.65 0.46 0.87 16 19 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 20 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.42 8.13 -2.38 -0.02 1.40 16 26 H 0.04 1.38 5.93 -2.38 -0.01 1.37 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.11 1.56 6.23 -2.39 -0.01 1.54 16 29 H 0.06 1.41 7.78 -2.39 -0.02 1.40 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.10 1.21 6.27 -2.39 -0.01 1.19 16 32 H 0.06 0.92 8.05 -2.39 -0.02 0.90 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.98 7.97 -2.38 -0.02 0.96 16 39 H 0.06 0.96 7.96 -2.39 -0.02 0.94 16 40 H 0.05 2.53 8.13 -2.39 -0.02 2.51 16 41 H 0.05 2.55 8.13 -2.39 -0.02 2.53 16 42 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -66.25 348.12 6.66 -59.59 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.94 Total: 10.32 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 3.46 Total: -23.80 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.28 Total: -55.48 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.04 Total: -36.68 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.25 6.66 -59.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172052543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.970 kcal (2) G-P(sol) polarization free energy of solvation -66.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds