Wall clock time and date at job start Mon Mar 30 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 H 1.09000 * 109.47042 * 306.78520 * 3 2 1 5 5 C 1.53000 * 109.47374 * 186.79053 * 3 2 1 6 6 C 1.52997 * 109.47665 * 173.26109 * 5 3 2 7 7 C 1.54264 * 110.03178 * 291.71577 * 6 5 3 8 8 C 1.54898 * 104.19372 * 217.10228 * 7 6 5 9 9 C 1.54890 * 102.75025 * 37.93642 * 8 7 6 10 10 C 1.53870 * 110.03658 * 174.54075 * 6 5 3 11 11 C 1.50696 * 109.47513 * 66.78931 * 3 2 1 12 12 O 1.20818 * 120.00410 * 120.00542 * 11 3 2 13 13 O 1.34234 * 119.99814 * 299.99777 * 11 3 2 14 14 C 1.45200 * 117.00105 * 179.97438 * 13 11 3 15 15 C 1.52998 * 109.47179 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47059 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00364 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00115 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99786 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46904 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46894 * 120.00079 * 20 18 16 23 23 H 1.48504 * 109.46830 * 239.99993 * 20 18 16 24 24 H 1.08998 * 109.47438 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47017 * 300.00732 * 1 2 3 26 26 H 1.08996 * 109.47085 * 60.00220 * 1 2 3 27 27 H 1.08997 * 109.47604 * 239.99229 * 2 1 3 28 28 H 1.09004 * 109.47349 * 119.99226 * 2 1 3 29 29 H 1.08996 * 109.47351 * 293.26378 * 5 3 2 30 30 H 1.09002 * 109.47051 * 53.26409 * 5 3 2 31 31 H 1.09001 * 110.01518 * 53.14814 * 6 5 3 32 32 H 1.09006 * 110.48591 * 335.77333 * 7 6 5 33 33 H 1.08995 * 110.49158 * 98.42292 * 7 6 5 34 34 H 1.08997 * 110.75008 * 279.62470 * 8 7 6 35 35 H 1.08999 * 110.91679 * 156.32378 * 8 7 6 36 36 H 1.08994 * 110.49196 * 203.38026 * 9 8 7 37 37 H 1.09003 * 110.59709 * 80.79142 * 9 8 7 38 38 H 1.09005 * 110.03451 * 238.56931 * 10 6 5 39 39 H 1.08999 * 110.03311 * 359.95238 * 10 6 5 40 40 H 1.08997 * 109.47275 * 300.00628 * 14 13 11 41 41 H 1.09001 * 109.46967 * 60.00591 * 14 13 11 42 42 H 1.08997 * 109.47125 * 300.00224 * 15 14 13 43 43 H 1.09001 * 109.47093 * 60.00172 * 15 14 13 44 44 H 0.97005 * 119.99996 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5809 1.9901 -0.8230 5 6 3.5605 1.4458 -0.1706 6 6 4.0517 2.8850 -0.3390 7 6 3.5676 3.4540 -1.6887 8 6 4.7491 4.3280 -2.1781 9 6 5.9866 3.5032 -1.7453 10 6 5.5896 2.9163 -0.3749 11 6 1.6796 2.1028 1.3058 12 8 2.5494 2.5321 2.0260 13 8 0.3920 2.2142 1.6686 14 6 0.1189 2.8610 2.9395 15 6 -1.3917 2.8945 3.1805 16 6 -1.6752 3.5664 4.4992 17 1 -0.8596 3.9332 5.1048 18 6 -2.9758 3.7138 4.9323 19 7 -3.9690 3.2676 4.1947 20 14 -3.3273 4.5473 6.5667 21 1 -2.0474 4.9565 7.1990 22 1 -4.1722 5.7470 6.3389 23 1 -4.0417 3.6013 7.4612 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 4.0259 1.0039 0.7104 30 1 3.8283 0.8649 -1.0531 31 1 3.6847 3.5028 0.4805 32 1 3.3720 2.6469 -2.3948 33 1 2.6750 4.0635 -1.5477 34 1 4.7408 5.2999 -1.6848 35 1 4.7232 4.4460 -3.2614 36 1 6.8593 4.1485 -1.6455 37 1 6.1839 2.7041 -2.4598 38 1 5.9691 3.5500 0.4267 39 1 5.9862 1.9062 -0.2715 40 1 0.6022 2.3039 3.7420 41 1 0.5066 3.8795 2.9196 42 1 -1.8753 3.4515 2.3780 43 1 -1.7791 1.8759 3.2005 44 1 -4.8841 3.3709 4.4995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172052546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:02 Heat of formation + Delta-G solvation = -137.966363 kcal Electronic energy + Delta-G solvation = -21021.457225 eV Core-core repulsion = 17936.885308 eV Total energy + Delta-G solvation = -3084.571918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35408 -38.41130 -36.14818 -35.21526 -33.31616 -31.24856 -30.23281 -28.81190 -27.51845 -25.26619 -23.58733 -22.60305 -20.95030 -20.76764 -19.76126 -19.52121 -17.41990 -16.46952 -16.13991 -15.77559 -15.70840 -15.01209 -14.53648 -13.90699 -13.73647 -13.65497 -13.41925 -13.08532 -12.92966 -12.37004 -12.13741 -12.04219 -11.77296 -11.39389 -11.20737 -11.16664 -11.13625 -11.00948 -10.85878 -10.78753 -10.68414 -10.59169 -10.53020 -10.43305 -10.27401 -9.93963 -9.58628 -9.52404 -9.25149 -8.44355 -6.10307 -4.14362 2.65513 3.24570 3.27397 3.35301 3.41029 4.39290 4.42430 4.54332 4.61013 4.80795 4.90780 5.02302 5.26360 5.27977 5.36796 5.37625 5.44935 5.46975 5.56162 5.61740 5.63956 5.69351 5.75620 5.81200 5.83762 5.96126 6.03391 6.08516 6.09342 6.12050 6.15693 6.20760 6.23320 6.31590 6.49344 6.62738 6.71279 7.09795 7.57511 7.63449 7.87808 8.22218 8.33248 8.91484 9.50100 11.01167 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.003726 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.966613 B = 7512.135952 C = 8109.785637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.112 4.112 3 C -0.085 4.085 4 H 0.105 0.895 5 C -0.095 4.095 6 C -0.100 4.100 7 C -0.124 4.124 8 C -0.125 4.125 9 C -0.124 4.124 10 C -0.117 4.117 11 C 0.459 3.541 12 O -0.516 6.516 13 O -0.352 6.352 14 C 0.072 3.928 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.581 -3.976 -13.685 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.149 4.149 3 C -0.104 4.104 4 H 0.123 0.877 5 C -0.132 4.132 6 C -0.119 4.119 7 C -0.161 4.161 8 C -0.163 4.163 9 C -0.162 4.162 10 C -0.155 4.155 11 C 0.302 3.698 12 O -0.405 6.405 13 O -0.268 6.268 14 C 0.000 4.000 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.609 -3.850 -13.430 20.948 hybrid contribution -0.269 0.541 1.033 1.197 sum 15.339 -3.308 -12.398 19.999 Atomic orbital electron populations 1.22022 0.94314 1.01850 1.04194 1.21479 0.97421 0.93526 1.02505 1.21251 0.97734 0.97584 0.93832 0.87709 1.21621 0.92264 0.97049 1.02271 1.21935 0.95144 0.96562 0.98235 1.22514 0.97961 0.99054 0.96606 1.22483 0.94914 0.98664 1.00215 1.22359 0.97687 0.99092 0.97059 1.22161 0.95414 1.00861 0.97067 1.23568 0.81612 0.76631 0.88000 1.90589 1.49946 1.46090 1.53893 1.86571 1.26941 1.71647 1.41639 1.23608 1.01215 0.95417 0.79802 1.19154 0.86155 0.98533 0.97333 1.21030 0.92510 1.38794 1.04025 0.92276 1.24982 0.96104 0.95515 0.97561 1.69986 0.99191 1.46037 1.37629 0.86434 0.78430 0.79194 0.83379 1.19600 1.20833 1.20830 0.92850 0.89675 0.92672 0.90939 0.91696 0.91017 0.90934 0.89444 0.91542 0.91827 0.91641 0.91887 0.92106 0.91903 0.91962 0.91926 0.92516 0.92525 0.95432 0.95418 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.60 37.15 0.36 -1.78 16 2 C -0.11 -1.27 5.38 -26.74 -0.14 -1.41 16 3 C -0.08 -1.07 2.24 -91.77 -0.21 -1.27 16 4 H 0.10 1.21 7.34 -51.93 -0.38 0.83 16 5 C -0.09 -1.05 3.45 -26.73 -0.09 -1.14 16 6 C -0.10 -1.16 2.71 -89.51 -0.24 -1.40 16 7 C -0.12 -1.25 5.46 -25.07 -0.14 -1.39 16 8 C -0.13 -1.14 6.91 -24.73 -0.17 -1.31 16 9 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 10 C -0.12 -1.20 6.46 -25.61 -0.17 -1.36 16 11 C 0.46 7.91 6.90 36.00 0.25 8.15 16 12 O -0.52 -10.00 13.88 -18.74 -0.26 -10.26 16 13 O -0.35 -6.91 7.46 -39.27 -0.29 -7.20 16 14 C 0.07 1.61 5.40 37.16 0.20 1.81 16 15 C 0.03 0.66 5.35 -27.89 -0.15 0.51 16 16 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 17 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.37 5.53 -51.93 -0.29 1.08 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.87 7.89 -51.93 -0.41 0.46 16 30 H 0.07 0.65 7.97 -51.93 -0.41 0.23 16 31 H 0.09 1.28 6.08 -51.93 -0.32 0.97 16 32 H 0.07 0.60 7.75 -51.93 -0.40 0.19 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 40 H 0.06 1.27 8.13 -51.93 -0.42 0.84 16 41 H 0.06 1.27 8.13 -51.93 -0.42 0.84 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -30.14 346.96 -8.76 -38.89 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -8.07 Total: -2.10 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -1.08 Total: -15.37 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.64 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.55 Total: -17.46 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.14 -8.76 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172052546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.072 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds