Wall clock time and date at job start Mon Mar 30 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 H 1.09000 * 109.47042 * 306.78520 * 3 2 1 5 5 C 1.53000 * 109.47374 * 186.79053 * 3 2 1 6 6 C 1.52997 * 109.47665 * 173.26109 * 5 3 2 7 7 C 1.54264 * 110.03178 * 291.71577 * 6 5 3 8 8 C 1.54898 * 104.19372 * 217.10228 * 7 6 5 9 9 C 1.54890 * 102.75025 * 37.93642 * 8 7 6 10 10 C 1.53870 * 110.03658 * 174.54075 * 6 5 3 11 11 C 1.50696 * 109.47513 * 66.78931 * 3 2 1 12 12 O 1.20818 * 120.00410 * 120.00542 * 11 3 2 13 13 O 1.34234 * 119.99814 * 299.99777 * 11 3 2 14 14 C 1.45200 * 117.00105 * 179.97438 * 13 11 3 15 15 C 1.52998 * 109.47179 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47059 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00364 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00115 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99786 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46904 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46894 * 120.00079 * 20 18 16 23 23 H 1.48504 * 109.46830 * 239.99993 * 20 18 16 24 24 H 1.08998 * 109.47438 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47017 * 300.00732 * 1 2 3 26 26 H 1.08996 * 109.47085 * 60.00220 * 1 2 3 27 27 H 1.08997 * 109.47604 * 239.99229 * 2 1 3 28 28 H 1.09004 * 109.47349 * 119.99226 * 2 1 3 29 29 H 1.08996 * 109.47351 * 293.26378 * 5 3 2 30 30 H 1.09002 * 109.47051 * 53.26409 * 5 3 2 31 31 H 1.09001 * 110.01518 * 53.14814 * 6 5 3 32 32 H 1.09006 * 110.48591 * 335.77333 * 7 6 5 33 33 H 1.08995 * 110.49158 * 98.42292 * 7 6 5 34 34 H 1.08997 * 110.75008 * 279.62470 * 8 7 6 35 35 H 1.08999 * 110.91679 * 156.32378 * 8 7 6 36 36 H 1.08994 * 110.49196 * 203.38026 * 9 8 7 37 37 H 1.09003 * 110.59709 * 80.79142 * 9 8 7 38 38 H 1.09005 * 110.03451 * 238.56931 * 10 6 5 39 39 H 1.08999 * 110.03311 * 359.95238 * 10 6 5 40 40 H 1.08997 * 109.47275 * 300.00628 * 14 13 11 41 41 H 1.09001 * 109.46967 * 60.00591 * 14 13 11 42 42 H 1.08997 * 109.47125 * 300.00224 * 15 14 13 43 43 H 1.09001 * 109.47093 * 60.00172 * 15 14 13 44 44 H 0.97005 * 119.99996 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5809 1.9901 -0.8230 5 6 3.5605 1.4458 -0.1706 6 6 4.0517 2.8850 -0.3390 7 6 3.5676 3.4540 -1.6887 8 6 4.7491 4.3280 -2.1781 9 6 5.9866 3.5032 -1.7453 10 6 5.5896 2.9163 -0.3749 11 6 1.6796 2.1028 1.3058 12 8 2.5494 2.5321 2.0260 13 8 0.3920 2.2142 1.6686 14 6 0.1189 2.8610 2.9395 15 6 -1.3917 2.8945 3.1805 16 6 -1.6752 3.5664 4.4992 17 1 -0.8596 3.9332 5.1048 18 6 -2.9758 3.7138 4.9323 19 7 -3.9690 3.2676 4.1947 20 14 -3.3273 4.5473 6.5667 21 1 -2.0474 4.9565 7.1990 22 1 -4.1722 5.7470 6.3389 23 1 -4.0417 3.6013 7.4612 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 4.0259 1.0039 0.7104 30 1 3.8283 0.8649 -1.0531 31 1 3.6847 3.5028 0.4805 32 1 3.3720 2.6469 -2.3948 33 1 2.6750 4.0635 -1.5477 34 1 4.7408 5.2999 -1.6848 35 1 4.7232 4.4460 -3.2614 36 1 6.8593 4.1485 -1.6455 37 1 6.1839 2.7041 -2.4598 38 1 5.9691 3.5500 0.4267 39 1 5.9862 1.9062 -0.2715 40 1 0.6022 2.3039 3.7420 41 1 0.5066 3.8795 2.9196 42 1 -1.8753 3.4515 2.3780 43 1 -1.7791 1.8759 3.2005 44 1 -4.8841 3.3709 4.4995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172052546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:02 Heat of formation + Delta-G solvation = -152.134531 kcal Electronic energy + Delta-G solvation = -21022.071603 eV Core-core repulsion = 17936.885308 eV Total energy + Delta-G solvation = -3085.186296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.74075 -39.38281 -37.64912 -36.29867 -35.43070 -32.36090 -32.06384 -29.58352 -28.52339 -27.16387 -24.82714 -23.74936 -22.73591 -21.66002 -20.99121 -20.40216 -18.97073 -18.22965 -17.78274 -17.16693 -16.68973 -16.50358 -15.93471 -15.21028 -14.81710 -14.69683 -14.55286 -14.34485 -14.30342 -14.13845 -13.28867 -13.21783 -12.97827 -12.92384 -12.68868 -12.60417 -12.57119 -12.10005 -11.95626 -11.92299 -11.87121 -11.75031 -11.54885 -11.50076 -11.42045 -11.38011 -11.31967 -11.16927 -10.91799 -10.63276 -8.28810 -6.42039 1.24950 1.39236 1.39813 1.53362 1.83112 2.38933 3.05335 3.51458 3.68297 3.75326 3.83738 4.00098 4.04634 4.19465 4.22361 4.34905 4.47800 4.51765 4.59196 4.60477 4.68813 4.73477 4.76480 4.81195 4.89945 4.94687 4.97656 5.09963 5.12546 5.13405 5.22418 5.25264 5.29686 5.31767 5.45122 5.45390 5.51488 5.51985 5.60473 5.68244 5.77744 6.05489 6.70772 6.82591 7.27793 8.83872 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.003726 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.966613 B = 7512.135952 C = 8109.785637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.106 4.106 3 C -0.077 4.077 4 H 0.120 0.880 5 C -0.089 4.089 6 C -0.104 4.104 7 C -0.123 4.123 8 C -0.126 4.126 9 C -0.119 4.119 10 C -0.118 4.118 11 C 0.452 3.548 12 O -0.540 6.540 13 O -0.356 6.356 14 C 0.088 3.912 15 C 0.034 3.966 16 C -0.551 4.551 17 H 0.062 0.938 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.973 3.027 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.274 1.274 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.112 0.888 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.005 0.995 43 H 0.006 0.994 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.752 -4.597 -14.908 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.143 4.143 3 C -0.095 4.095 4 H 0.138 0.862 5 C -0.126 4.126 6 C -0.122 4.122 7 C -0.160 4.160 8 C -0.164 4.164 9 C -0.156 4.156 10 C -0.156 4.156 11 C 0.297 3.703 12 O -0.430 6.430 13 O -0.273 6.273 14 C 0.015 3.985 15 C -0.003 4.003 16 C -0.589 4.589 17 H 0.080 0.920 18 C -0.192 4.192 19 N -0.564 5.564 20 Si 0.796 3.204 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.130 0.870 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.795 -4.476 -14.665 22.742 hybrid contribution -0.615 0.714 1.365 1.659 sum 16.180 -3.762 -13.300 21.280 Atomic orbital electron populations 1.22008 0.95631 1.02226 1.02645 1.21513 0.96124 0.92577 1.04126 1.21452 0.99100 0.98079 0.90908 0.86204 1.21653 0.90619 0.97043 1.03297 1.21894 0.96198 0.96375 0.97771 1.22521 0.97767 0.99637 0.96094 1.22501 0.94714 0.98035 1.01110 1.22347 0.97567 0.99501 0.96209 1.22160 0.94322 1.01343 0.97766 1.24708 0.80195 0.76031 0.89378 1.90581 1.50205 1.47128 1.55090 1.86617 1.28955 1.71587 1.40104 1.23083 0.98562 0.95500 0.81388 1.18937 0.88483 0.96619 0.96230 1.21404 0.93128 1.39421 1.04939 0.92009 1.25953 0.95739 0.95928 1.01583 1.70100 0.99789 1.46914 1.39639 0.85286 0.78518 0.78202 0.78356 1.18791 1.19943 1.19916 0.91569 0.93579 0.91766 0.86952 0.92314 0.92274 0.87290 0.93425 0.89460 0.93178 0.92783 0.90232 0.91537 0.90232 0.93445 0.90884 0.92779 0.92869 0.97643 0.97515 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 9.60 71.98 0.69 -3.43 16 2 C -0.11 -2.15 5.38 30.59 0.16 -1.98 16 3 C -0.08 -1.81 2.24 -11.54 -0.03 -1.83 16 4 H 0.12 2.52 7.34 -2.39 -0.02 2.50 16 5 C -0.09 -1.78 3.45 30.59 0.11 -1.67 16 6 C -0.10 -2.31 2.71 -10.07 -0.03 -2.34 16 7 C -0.12 -2.25 5.46 31.67 0.17 -2.08 16 8 C -0.13 -2.05 6.91 31.89 0.22 -1.83 16 9 C -0.12 -1.78 6.83 31.67 0.22 -1.56 16 10 C -0.12 -2.25 6.46 31.32 0.20 -2.05 16 11 C 0.45 15.83 6.90 71.23 0.49 16.32 16 12 O -0.54 -21.56 13.88 21.99 0.31 -21.26 16 13 O -0.36 -14.50 7.46 -51.45 -0.38 -14.89 16 14 C 0.09 4.11 5.40 71.98 0.39 4.50 16 15 C 0.03 1.89 5.35 29.85 0.16 2.05 16 16 C -0.55 -31.90 9.11 25.60 0.23 -31.66 16 17 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 18 C 0.01 0.40 5.46 84.65 0.46 0.87 16 19 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 20 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.51 5.53 -2.38 -0.01 1.49 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.11 1.47 8.12 -2.39 -0.02 1.45 16 28 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.06 1.35 7.89 -2.39 -0.02 1.33 16 30 H 0.11 1.44 7.97 -2.39 -0.02 1.43 16 31 H 0.05 1.44 6.08 -2.39 -0.01 1.43 16 32 H 0.09 1.25 7.75 -2.38 -0.02 1.23 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.07 1.23 7.67 -2.39 -0.02 1.21 16 40 H 0.05 2.52 8.13 -2.39 -0.02 2.50 16 41 H 0.05 2.48 8.13 -2.39 -0.02 2.46 16 42 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -66.99 346.96 6.62 -60.37 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.94 Total: 11.81 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 3.46 Total: -26.71 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.28 Total: -55.51 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.08 Total: -36.15 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -66.99 6.62 -60.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172052546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.765 kcal (2) G-P(sol) polarization free energy of solvation -66.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds