Wall clock time and date at job start Mon Mar 30 2020 01:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99784 * 2 1 4 4 H 1.48494 * 109.47383 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46923 * 120.00021 * 3 2 1 6 6 H 1.48497 * 109.47011 * 239.99436 * 3 2 1 7 7 C 1.37874 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00361 * 180.02562 * 7 2 1 9 9 C 1.50711 * 119.99773 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46677 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.46670 * 179.97438 * 10 9 7 12 12 C 1.47847 * 111.00207 * 297.74138 * 11 10 9 13 13 C 1.54913 * 104.79353 * 213.63590 * 12 11 10 14 14 C 1.55142 * 101.65204 * 37.06922 * 13 12 11 15 15 C 1.47448 * 110.99959 * 176.89587 * 11 10 9 16 16 H 1.09004 * 109.88540 * 242.66562 * 15 11 10 17 17 C 1.53003 * 109.88597 * 3.85332 * 15 11 10 18 18 N 1.46900 * 109.47082 * 292.52520 * 17 15 11 19 19 C 1.47014 * 111.00255 * 293.63464 * 18 17 15 20 20 C 1.53095 * 109.25886 * 177.60663 * 19 18 17 21 21 O 1.43019 * 109.25786 * 56.85130 * 20 19 18 22 22 C 1.43015 * 113.73959 * 301.33135 * 21 20 19 23 23 C 1.47016 * 110.99636 * 170.00261 * 18 17 15 24 24 H 0.97006 * 119.99726 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47186 * 300.00205 * 9 7 2 26 26 H 1.09001 * 109.47076 * 60.00164 * 9 7 2 27 27 H 1.08993 * 109.47407 * 300.00300 * 10 9 7 28 28 H 1.09001 * 109.47212 * 60.00274 * 10 9 7 29 29 H 1.08996 * 110.37092 * 332.46231 * 12 11 10 30 30 H 1.08991 * 110.37517 * 94.80479 * 12 11 10 31 31 H 1.08994 * 110.98998 * 278.97727 * 13 12 11 32 32 H 1.09000 * 110.98824 * 155.15922 * 13 12 11 33 33 H 1.09002 * 110.70394 * 205.96195 * 14 13 12 34 34 H 1.08999 * 110.85517 * 82.80125 * 14 13 12 35 35 H 1.08998 * 109.47154 * 52.52857 * 17 15 11 36 36 H 1.09000 * 109.46411 * 172.52610 * 17 15 11 37 37 H 1.08995 * 109.50835 * 297.54545 * 19 18 17 38 38 H 1.09007 * 109.50512 * 57.67821 * 19 18 17 39 39 H 1.09004 * 109.50929 * 296.91728 * 20 19 18 40 40 H 1.08997 * 109.50630 * 176.78531 * 20 19 18 41 41 H 1.09005 * 109.50422 * 298.73276 * 22 21 20 42 42 H 1.08994 * 109.50899 * 178.60379 * 22 21 20 43 43 H 1.08998 * 109.50534 * 302.32358 * 23 18 17 44 44 H 1.08993 * 109.50742 * 62.45877 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5107 -4.9342 -0.0033 12 6 0.6898 -5.0726 1.2185 13 6 0.7041 -6.5890 1.5351 14 6 2.1544 -6.9770 1.1440 15 6 2.4369 -6.0791 -0.0788 16 1 2.2612 -6.6381 -0.9980 17 6 3.8833 -5.5820 -0.0366 18 7 4.1797 -4.8331 -1.2651 19 6 4.1546 -5.7166 -2.4399 20 6 4.4088 -4.8869 -3.7012 21 8 5.6547 -4.1972 -3.5690 22 6 5.7137 -3.3273 -2.4354 23 6 5.4727 -4.1412 -1.1612 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5575 0.8880 26 1 0.6247 -2.5563 -0.8920 27 1 2.8719 -3.6035 -0.8926 28 1 2.8719 -3.6051 0.8873 29 1 1.1334 -4.5094 2.0395 30 1 -0.3290 -4.7336 1.0316 31 1 -0.0218 -7.1227 0.9217 32 1 0.5243 -6.7683 2.5951 33 1 2.2108 -8.0305 0.8697 34 1 2.8479 -6.7536 1.9546 35 1 4.0189 -4.9314 0.8273 36 1 4.5582 -6.4345 0.0411 37 1 4.9305 -6.4757 -2.3410 38 1 3.1797 -6.1989 -2.5118 39 1 3.6038 -4.1631 -3.8291 40 1 4.4478 -5.5459 -4.5685 41 1 4.9467 -2.5581 -2.5265 42 1 6.6965 -2.8583 -2.3873 43 1 5.4600 -3.4735 -0.2998 44 1 6.2697 -4.8751 -1.0419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174015048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:36 Heat of formation + Delta-G solvation = -23.506831 kcal Electronic energy + Delta-G solvation = -22262.875281 eV Core-core repulsion = 19215.559453 eV Total energy + Delta-G solvation = -3047.315829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98861 -38.49804 -35.39898 -33.49972 -31.64978 -31.10765 -30.25351 -28.21519 -26.90556 -24.34751 -23.86458 -23.45922 -21.58385 -20.45404 -20.18260 -18.69761 -16.58636 -16.45449 -15.94753 -15.59187 -15.23246 -14.90571 -14.65764 -14.31584 -14.25327 -13.96645 -13.45169 -13.05860 -12.60058 -12.39133 -12.18437 -12.02985 -11.58339 -11.43870 -11.26123 -11.05630 -10.96057 -10.85247 -10.77059 -10.53996 -10.48393 -10.42864 -10.29074 -9.83944 -9.45977 -9.17382 -9.00740 -8.28597 -7.77826 -7.46914 -5.89968 -3.90891 3.36991 3.41713 3.43390 3.80543 4.00395 4.49563 4.69796 4.83304 4.91736 5.01558 5.07049 5.15843 5.26597 5.29049 5.35408 5.45769 5.50615 5.54392 5.61352 5.68437 5.76640 5.80001 5.88435 5.92161 5.93624 5.98880 6.10001 6.12655 6.29783 6.47079 6.51963 6.73618 6.85205 7.02917 7.05907 7.26126 7.46291 7.72764 7.77224 7.94716 8.14527 8.25377 8.59157 9.17200 9.71574 11.21655 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.007713 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.726079 B = 3629.266234 C = 5339.289056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.887 3.113 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.051 0.949 9 C 0.028 3.972 10 C 0.037 3.963 11 N -0.516 5.516 12 C 0.045 3.955 13 C -0.129 4.129 14 C -0.137 4.137 15 C 0.076 3.924 16 H 0.077 0.923 17 C 0.040 3.960 18 N -0.513 5.513 19 C 0.015 3.985 20 C 0.063 3.937 21 O -0.391 6.391 22 C 0.062 3.938 23 C 0.017 3.983 24 H 0.259 0.741 25 H 0.007 0.993 26 H 0.019 0.981 27 H 0.122 0.878 28 H 0.006 0.994 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.032 0.968 37 H 0.035 0.965 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.281 -13.980 -1.353 16.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.716 3.284 4 H -0.214 1.214 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.069 0.931 9 C -0.010 4.010 10 C -0.090 4.090 11 N -0.240 5.240 12 C -0.083 4.083 13 C -0.168 4.168 14 C -0.176 4.176 15 C -0.033 4.033 16 H 0.095 0.905 17 C -0.088 4.088 18 N -0.237 5.237 19 C -0.113 4.113 20 C -0.014 4.014 21 O -0.310 6.310 22 C -0.015 4.015 23 C -0.111 4.111 24 H 0.068 0.932 25 H 0.025 0.975 26 H 0.037 0.963 27 H 0.139 0.861 28 H 0.024 0.976 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.611 -13.508 -1.995 15.633 hybrid contribution 1.326 0.422 1.236 1.861 sum 8.938 -13.087 -0.759 15.866 Atomic orbital electron populations 1.69970 1.05970 1.26370 1.51184 1.24987 0.94772 0.98950 0.95696 0.86740 0.79631 0.83608 0.78460 1.21395 1.20485 1.20276 1.21145 0.92770 0.91102 1.49997 0.93069 1.19089 0.94131 0.90744 0.97017 1.23189 0.97035 0.87145 1.01625 1.63792 1.21547 1.02582 1.36098 1.23017 0.99434 0.93948 0.91916 1.22706 0.96186 0.97232 1.00630 1.22811 0.97396 0.99393 0.98027 1.22475 0.90221 0.92888 0.97699 0.90483 1.22628 0.96855 0.96372 0.92961 1.62593 1.29526 1.28804 1.02787 1.22846 1.01894 0.94862 0.91655 1.22656 0.86807 0.95498 0.96435 1.87924 1.35900 1.60124 1.47007 1.22686 1.02565 0.92216 0.84035 1.22785 0.89939 0.98279 1.00070 0.93152 0.97498 0.96268 0.86113 0.97616 0.93941 0.90512 0.91110 0.91553 0.91535 0.91814 0.89922 0.94994 0.94671 0.89148 0.91594 0.88919 0.91181 0.88782 0.89339 0.94600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.03 0.74 4.91 -27.88 -0.14 0.60 16 10 C 0.04 0.78 3.56 -3.82 -0.01 0.77 16 11 N -0.52 -9.54 5.22 -223.35 -1.16 -10.71 16 12 C 0.04 0.78 5.47 -2.29 -0.01 0.77 16 13 C -0.13 -1.72 7.08 -24.59 -0.17 -1.89 16 14 C -0.14 -1.70 6.47 -24.91 -0.16 -1.86 16 15 C 0.08 1.11 3.41 -66.72 -0.23 0.89 16 16 H 0.08 1.10 6.29 -51.93 -0.33 0.77 16 17 C 0.04 0.56 3.55 -3.82 -0.01 0.55 16 18 N -0.51 -7.51 1.67 -234.31 -0.39 -7.90 16 19 C 0.02 0.20 5.45 -3.71 -0.02 0.18 16 20 C 0.06 0.82 7.01 37.21 0.26 1.08 16 21 O -0.39 -5.68 10.83 -35.23 -0.38 -6.06 16 22 C 0.06 0.86 7.01 37.21 0.26 1.12 16 23 C 0.02 0.24 5.62 -3.71 -0.02 0.22 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 25 H 0.01 0.19 7.22 -51.93 -0.38 -0.18 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.12 2.58 4.99 -51.93 -0.26 2.32 16 28 H 0.01 0.12 6.42 -51.93 -0.33 -0.21 16 29 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.77 7.85 -51.93 -0.41 0.36 16 35 H 0.08 1.27 6.24 -51.93 -0.32 0.95 16 36 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 1.14 6.28 -51.93 -0.33 0.81 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 330.74 15.07 4.98 4.98 Total: -1.00 -31.18 330.74 -9.69 -40.87 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.78 Total: -0.41 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.67 Total: -10.97 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.82 Total: -45.31 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.38 Total: -6.06 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.18 -9.69 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174015048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.362 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds