Wall clock time and date at job start Mon Mar 30 2020 01:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99784 * 2 1 4 4 H 1.48494 * 109.47383 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46923 * 120.00021 * 3 2 1 6 6 H 1.48497 * 109.47011 * 239.99436 * 3 2 1 7 7 C 1.37874 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00361 * 180.02562 * 7 2 1 9 9 C 1.50711 * 119.99773 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46677 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.46670 * 179.97438 * 10 9 7 12 12 C 1.47847 * 111.00207 * 297.74138 * 11 10 9 13 13 C 1.54913 * 104.79353 * 213.63590 * 12 11 10 14 14 C 1.55142 * 101.65204 * 37.06922 * 13 12 11 15 15 C 1.47448 * 110.99959 * 176.89587 * 11 10 9 16 16 H 1.09004 * 109.88540 * 242.66562 * 15 11 10 17 17 C 1.53003 * 109.88597 * 3.85332 * 15 11 10 18 18 N 1.46900 * 109.47082 * 292.52520 * 17 15 11 19 19 C 1.47014 * 111.00255 * 293.63464 * 18 17 15 20 20 C 1.53095 * 109.25886 * 177.60663 * 19 18 17 21 21 O 1.43019 * 109.25786 * 56.85130 * 20 19 18 22 22 C 1.43015 * 113.73959 * 301.33135 * 21 20 19 23 23 C 1.47016 * 110.99636 * 170.00261 * 18 17 15 24 24 H 0.97006 * 119.99726 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47186 * 300.00205 * 9 7 2 26 26 H 1.09001 * 109.47076 * 60.00164 * 9 7 2 27 27 H 1.08993 * 109.47407 * 300.00300 * 10 9 7 28 28 H 1.09001 * 109.47212 * 60.00274 * 10 9 7 29 29 H 1.08996 * 110.37092 * 332.46231 * 12 11 10 30 30 H 1.08991 * 110.37517 * 94.80479 * 12 11 10 31 31 H 1.08994 * 110.98998 * 278.97727 * 13 12 11 32 32 H 1.09000 * 110.98824 * 155.15922 * 13 12 11 33 33 H 1.09002 * 110.70394 * 205.96195 * 14 13 12 34 34 H 1.08999 * 110.85517 * 82.80125 * 14 13 12 35 35 H 1.08998 * 109.47154 * 52.52857 * 17 15 11 36 36 H 1.09000 * 109.46411 * 172.52610 * 17 15 11 37 37 H 1.08995 * 109.50835 * 297.54545 * 19 18 17 38 38 H 1.09007 * 109.50512 * 57.67821 * 19 18 17 39 39 H 1.09004 * 109.50929 * 296.91728 * 20 19 18 40 40 H 1.08997 * 109.50630 * 176.78531 * 20 19 18 41 41 H 1.09005 * 109.50422 * 298.73276 * 22 21 20 42 42 H 1.08994 * 109.50899 * 178.60379 * 22 21 20 43 43 H 1.08998 * 109.50534 * 302.32358 * 23 18 17 44 44 H 1.08993 * 109.50742 * 62.45877 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5107 -4.9342 -0.0033 12 6 0.6898 -5.0726 1.2185 13 6 0.7041 -6.5890 1.5351 14 6 2.1544 -6.9770 1.1440 15 6 2.4369 -6.0791 -0.0788 16 1 2.2612 -6.6381 -0.9980 17 6 3.8833 -5.5820 -0.0366 18 7 4.1797 -4.8331 -1.2651 19 6 4.1546 -5.7166 -2.4399 20 6 4.4088 -4.8869 -3.7012 21 8 5.6547 -4.1972 -3.5690 22 6 5.7137 -3.3273 -2.4354 23 6 5.4727 -4.1412 -1.1612 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5575 0.8880 26 1 0.6247 -2.5563 -0.8920 27 1 2.8719 -3.6035 -0.8926 28 1 2.8719 -3.6051 0.8873 29 1 1.1334 -4.5094 2.0395 30 1 -0.3290 -4.7336 1.0316 31 1 -0.0218 -7.1227 0.9217 32 1 0.5243 -6.7683 2.5951 33 1 2.2108 -8.0305 0.8697 34 1 2.8479 -6.7536 1.9546 35 1 4.0189 -4.9314 0.8273 36 1 4.5582 -6.4345 0.0411 37 1 4.9305 -6.4757 -2.3410 38 1 3.1797 -6.1989 -2.5118 39 1 3.6038 -4.1631 -3.8291 40 1 4.4478 -5.5459 -4.5685 41 1 4.9467 -2.5581 -2.5265 42 1 6.6965 -2.8583 -2.3873 43 1 5.4600 -3.4735 -0.2998 44 1 6.2697 -4.8751 -1.0419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174015048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:35 Heat of formation + Delta-G solvation = -44.330439 kcal Electronic energy + Delta-G solvation = -22263.778261 eV Core-core repulsion = 19215.559453 eV Total energy + Delta-G solvation = -3048.218808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17720 -39.70226 -36.53186 -35.53694 -33.42855 -32.16879 -31.43643 -30.03826 -28.04476 -26.21517 -25.00801 -24.67491 -23.20495 -21.75682 -21.30723 -20.14172 -18.51862 -17.63552 -17.21312 -16.92969 -16.53864 -16.32433 -15.98523 -15.84898 -15.41563 -15.14016 -15.01451 -14.39882 -14.17273 -13.81466 -13.67982 -13.26311 -13.11118 -12.89895 -12.69714 -12.52176 -12.41592 -12.31755 -12.16755 -11.94288 -11.80863 -11.73211 -11.54985 -11.37945 -11.20467 -11.08031 -10.61459 -10.50956 -9.00843 -8.94446 -8.15749 -6.25967 1.38662 1.42403 1.49907 2.41855 2.73608 2.97048 3.17163 3.33801 3.73935 3.81889 3.91054 4.00374 4.04767 4.20831 4.23256 4.30194 4.40242 4.41685 4.51952 4.60974 4.67484 4.70126 4.74970 4.78416 4.85185 4.90447 4.95925 5.00027 5.05022 5.08205 5.11662 5.24736 5.38789 5.43450 5.58739 5.78176 5.96172 5.98595 6.03159 6.19127 6.24557 6.48600 6.53039 6.92380 7.42360 8.96607 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.007713 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.726079 B = 3629.266234 C = 5339.289056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.962 3.038 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.037 3.963 10 C 0.063 3.937 11 N -0.534 5.534 12 C 0.040 3.960 13 C -0.117 4.117 14 C -0.128 4.128 15 C 0.074 3.926 16 H 0.087 0.913 17 C 0.047 3.953 18 N -0.540 5.540 19 C 0.021 3.979 20 C 0.060 3.940 21 O -0.399 6.399 22 C 0.062 3.938 23 C 0.022 3.978 24 H 0.261 0.739 25 H -0.023 1.023 26 H -0.020 1.020 27 H 0.125 0.875 28 H 0.000 1.000 29 H 0.022 0.978 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.120 0.880 41 H 0.043 0.957 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.303 -15.526 -1.326 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.786 3.214 4 H -0.210 1.210 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.065 4.065 11 N -0.258 5.258 12 C -0.088 4.088 13 C -0.155 4.155 14 C -0.166 4.166 15 C -0.035 4.035 16 H 0.105 0.895 17 C -0.081 4.081 18 N -0.265 5.265 19 C -0.106 4.106 20 C -0.016 4.016 21 O -0.318 6.318 22 C -0.015 4.015 23 C -0.106 4.106 24 H 0.070 0.930 25 H -0.005 1.005 26 H -0.001 1.001 27 H 0.142 0.858 28 H 0.018 0.982 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.138 0.862 41 H 0.061 0.939 42 H 0.134 0.866 43 H 0.098 0.902 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.646 -15.079 -1.968 18.009 hybrid contribution 0.634 0.877 1.195 1.613 sum 10.281 -14.202 -0.773 17.549 Atomic orbital electron populations 1.70128 1.07885 1.27530 1.52041 1.25967 0.95692 1.03233 0.94982 0.85552 0.78323 0.78269 0.79216 1.20985 1.19170 1.18995 1.21546 0.93309 0.92130 1.49914 0.92307 1.18945 0.94329 0.93157 0.93595 1.22779 0.95248 0.86926 1.01514 1.63637 1.22646 1.02673 1.36827 1.22985 0.97665 0.97276 0.90923 1.22659 0.97424 0.93373 1.02095 1.22797 0.96404 1.00521 0.96913 1.22599 0.89779 0.91657 0.99424 0.89518 1.22524 0.96804 0.96757 0.92048 1.62424 1.30432 1.29933 1.03678 1.22820 1.02531 0.94701 0.90587 1.22778 0.85676 0.95349 0.97838 1.87913 1.36433 1.60215 1.47249 1.22718 1.02887 0.91695 0.84186 1.22728 0.90030 0.98382 0.99462 0.93006 1.00512 1.00136 0.85786 0.98171 0.95936 0.93079 0.90164 0.89614 0.88397 0.91223 0.91676 0.92373 0.93078 0.88903 0.93861 0.86205 0.93897 0.86583 0.90213 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.25 13.29 21.45 0.28 -58.96 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.53 -31.30 9.11 25.60 0.23 -31.06 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 2.10 4.91 29.85 0.15 2.25 16 10 C 0.06 2.77 3.56 86.30 0.31 3.08 16 11 N -0.53 -20.00 5.22 -860.53 -4.49 -24.49 16 12 C 0.04 1.42 5.47 86.77 0.47 1.89 16 13 C -0.12 -2.89 7.08 31.98 0.23 -2.66 16 14 C -0.13 -2.75 6.47 31.77 0.21 -2.54 16 15 C 0.07 2.01 3.41 45.26 0.15 2.17 16 16 H 0.09 2.24 6.29 -2.38 -0.02 2.22 16 17 C 0.05 1.22 3.55 86.30 0.31 1.52 16 18 N -0.54 -15.16 1.67 -895.22 -1.49 -16.65 16 19 C 0.02 0.50 5.45 86.31 0.47 0.97 16 20 C 0.06 1.49 7.01 72.01 0.50 2.00 16 21 O -0.40 -11.05 10.83 -148.98 -1.61 -12.67 16 22 C 0.06 1.66 7.01 72.02 0.50 2.17 16 23 C 0.02 0.57 5.62 86.32 0.49 1.05 16 24 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 25 H -0.02 -1.44 7.22 -2.39 -0.02 -1.46 16 26 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 27 H 0.12 5.44 4.99 -2.39 -0.01 5.43 16 28 H 0.00 0.01 6.42 -2.39 -0.02 -0.01 16 29 H 0.02 0.88 7.68 -2.39 -0.02 0.86 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.45 7.85 -2.39 -0.02 1.43 16 35 H 0.06 1.93 6.24 -2.39 -0.01 1.92 16 36 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 2.14 6.28 -2.38 -0.01 2.12 16 39 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.12 2.26 8.14 -2.39 -0.02 2.25 16 41 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.08 2.19 8.09 -2.39 -0.02 2.17 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -69.83 330.74 0.15 -69.69 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.95 Total: 14.41 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 4.48 Total: -18.80 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -5.70 Total: -100.10 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -1.61 Total: -12.67 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.83 0.15 -69.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174015048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.356 kcal (2) G-P(sol) polarization free energy of solvation -69.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds