Wall clock time and date at job start Mon Mar 30 2020 01:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00263 * 2 1 4 4 H 1.48504 * 109.46616 * 269.99550 * 3 2 1 5 5 H 1.48493 * 109.47321 * 29.99259 * 3 2 1 6 6 H 1.48500 * 109.47100 * 149.99999 * 3 2 1 7 7 C 1.37876 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00316 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47219 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47024 * 185.92485 * 10 9 7 12 12 C 1.47902 * 110.99595 * 68.54748 * 11 10 9 13 13 C 1.54000 * 107.05594 * 214.15190 * 12 11 10 14 14 C 1.54603 * 105.13722 * 1.22430 * 13 12 11 15 15 C 1.48526 * 111.00286 * 311.14525 * 11 10 9 16 16 H 1.09009 * 110.66526 * 41.29111 * 15 11 10 17 17 C 1.52992 * 110.67222 * 278.15519 * 15 11 10 18 18 N 1.46902 * 109.47396 * 174.84246 * 17 15 11 19 19 C 1.47010 * 111.00053 * 288.84598 * 18 17 15 20 20 C 1.53099 * 109.25926 * 177.60560 * 19 18 17 21 21 O 1.43020 * 109.25465 * 56.85127 * 20 19 18 22 22 C 1.43009 * 113.73833 * 301.32751 * 21 20 19 23 23 C 1.47015 * 110.99834 * 165.21419 * 18 17 15 24 24 H 0.97003 * 119.99786 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46659 * 59.99492 * 9 7 2 26 26 H 1.08997 * 109.47210 * 300.00331 * 9 7 2 27 27 H 1.08994 * 109.47431 * 305.93357 * 10 9 7 28 28 H 1.09005 * 109.46723 * 65.93153 * 10 9 7 29 29 H 1.08995 * 109.91750 * 333.50041 * 12 11 10 30 30 H 1.09001 * 109.91899 * 94.80512 * 12 11 10 31 31 H 1.08997 * 110.30522 * 120.13678 * 13 12 11 32 32 H 1.08993 * 110.31215 * 242.30875 * 13 12 11 33 33 H 1.08995 * 110.71892 * 140.31268 * 14 13 12 34 34 H 1.08994 * 110.72395 * 263.41737 * 14 13 12 35 35 H 1.09000 * 109.47122 * 294.84527 * 17 15 11 36 36 H 1.09002 * 109.47309 * 54.84225 * 17 15 11 37 37 H 1.08999 * 109.51033 * 297.54497 * 19 18 17 38 38 H 1.09010 * 109.50340 * 57.67602 * 19 18 17 39 39 H 1.09005 * 109.50519 * 296.91741 * 20 19 18 40 40 H 1.08993 * 109.50899 * 176.78698 * 20 19 18 41 41 H 1.08997 * 109.51310 * 298.74109 * 22 21 20 42 42 H 1.09005 * 109.54281 * 178.62737 * 22 21 20 43 43 H 1.08998 * 109.50769 * 302.32703 * 23 18 17 44 44 H 1.09002 * 109.50661 * 62.45996 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6998 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 7 1.5161 -4.9295 -0.1424 12 6 0.9173 -5.0474 -1.4897 13 6 -0.4127 -5.8067 -1.3280 14 6 -0.5401 -6.0794 0.1884 15 6 0.3811 -5.0015 0.8130 16 1 -0.1338 -4.0425 0.8716 17 6 0.8662 -5.4412 2.1957 18 7 -0.2513 -5.3848 3.1475 19 6 -0.6161 -3.9931 3.4499 20 6 -1.8197 -3.9808 4.3960 21 8 -1.5007 -4.7252 5.5748 22 6 -1.1413 -6.0852 5.3172 23 6 0.0692 -6.1189 4.3803 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8902 27 1 2.9395 -3.5465 -0.8315 28 1 2.7997 -3.6659 0.9389 29 1 0.7308 -4.0555 -1.9012 30 1 1.5857 -5.6050 -2.1457 31 1 -1.2438 -5.1915 -1.6729 32 1 -0.3817 -6.7460 -1.8800 33 1 -1.5700 -5.9452 0.5192 34 1 -0.1859 -7.0812 0.4313 35 1 1.2452 -6.4617 2.1403 36 1 1.6622 -4.7757 2.5301 37 1 0.2262 -3.4912 3.9259 38 1 -0.8742 -3.4756 2.5259 39 1 -2.6774 -4.4349 3.8997 40 1 -2.0582 -2.9527 4.6682 41 1 -1.9792 -6.6005 4.8477 42 1 -0.8893 -6.5798 6.2553 43 1 0.3114 -7.1530 4.1356 44 1 0.9225 -5.6509 4.8712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174015061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:38 Heat of formation + Delta-G solvation = -39.182581 kcal Electronic energy + Delta-G solvation = -21958.623541 eV Core-core repulsion = 18910.627961 eV Total energy + Delta-G solvation = -3047.995580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.66591 -38.59305 -35.49599 -33.57609 -31.78677 -31.13216 -30.11809 -28.27116 -26.82726 -24.40448 -23.94633 -23.38127 -21.74252 -20.63219 -20.00513 -18.63835 -16.83973 -16.32102 -16.02700 -15.30189 -15.07148 -14.97482 -14.78504 -14.47294 -14.28771 -13.88835 -13.35739 -13.12153 -12.86121 -12.38485 -12.08444 -11.91167 -11.64756 -11.41807 -11.29112 -11.08380 -10.93213 -10.80496 -10.79913 -10.63213 -10.52132 -10.36744 -10.06346 -9.90572 -9.69737 -9.54388 -9.14318 -8.38901 -8.22069 -7.54585 -6.06476 -4.09025 3.27702 3.34409 3.37694 3.78830 3.96629 4.40631 4.74952 4.95452 5.05830 5.11958 5.16240 5.19592 5.24014 5.29125 5.39616 5.44431 5.57815 5.63715 5.70140 5.83612 5.84675 5.87729 6.02773 6.08770 6.11253 6.14635 6.21317 6.28595 6.37535 6.41213 6.46096 6.65072 6.70650 6.89217 7.09410 7.11447 7.21717 7.42989 7.51065 7.70113 7.76769 7.95721 8.37074 8.97238 9.55352 11.04397 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.006222 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.054203 B = 4498.749524 C = 5782.840733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.055 0.945 9 C -0.007 4.007 10 C 0.046 3.954 11 N -0.520 5.520 12 C 0.034 3.966 13 C -0.132 4.132 14 C -0.103 4.103 15 C 0.060 3.940 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.534 5.534 19 C 0.015 3.985 20 C 0.066 3.934 21 O -0.389 6.389 22 C 0.065 3.935 23 C 0.019 3.981 24 H 0.260 0.740 25 H 0.018 0.982 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 -13.039 5.488 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.045 4.045 10 C -0.081 4.081 11 N -0.244 5.244 12 C -0.094 4.094 13 C -0.170 4.170 14 C -0.141 4.141 15 C -0.049 4.049 16 H 0.096 0.904 17 C -0.052 4.052 18 N -0.259 5.259 19 C -0.113 4.113 20 C -0.011 4.011 21 O -0.308 6.308 22 C -0.012 4.012 23 C -0.110 4.110 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.094 -13.485 5.545 14.905 hybrid contribution 0.711 2.049 -0.173 2.176 sum -2.382 -11.436 5.371 12.857 Atomic orbital electron populations 1.69956 1.06022 1.26630 1.50689 1.25001 0.94838 0.99217 0.95176 0.86612 0.79904 0.83482 0.78144 1.20644 1.21193 1.19868 1.21155 0.92995 0.90902 1.50793 0.92701 1.19657 0.94941 0.92671 0.97190 1.22402 0.97349 0.87649 1.00746 1.64873 1.21968 1.34984 1.02602 1.22790 0.94582 0.99956 0.92111 1.22401 0.97581 0.99882 0.97144 1.22341 0.99337 0.98541 0.93910 1.22803 0.91604 0.98992 0.91466 0.90448 1.21897 0.90862 1.01083 0.91324 1.62135 1.39080 1.13350 1.11358 1.22858 0.98157 0.89517 1.00791 1.22684 0.96228 0.96638 0.85546 1.87959 1.88487 1.22950 1.31411 1.22617 0.96086 0.83740 0.98742 1.22748 0.97611 0.99515 0.91097 0.92995 0.96390 0.96218 0.92034 0.92242 0.92540 0.91450 0.91894 0.91918 0.91477 0.91748 0.90726 0.94364 0.93763 0.88614 0.92391 0.88425 0.92480 0.88916 0.89919 0.94177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C -0.01 -0.17 3.99 -27.88 -0.11 -0.28 16 10 C 0.05 0.97 5.23 -3.83 -0.02 0.95 16 11 N -0.52 -9.51 5.23 -222.64 -1.16 -10.67 16 12 C 0.03 0.58 6.44 -2.75 -0.02 0.56 16 13 C -0.13 -1.94 6.93 -25.37 -0.18 -2.12 16 14 C -0.10 -1.53 6.42 -24.87 -0.16 -1.69 16 15 C 0.06 1.03 2.05 -65.79 -0.14 0.89 16 16 H 0.08 1.57 3.78 -51.92 -0.20 1.38 16 17 C 0.08 1.19 4.66 -3.83 -0.02 1.17 16 18 N -0.53 -7.68 4.61 -234.30 -1.08 -8.76 16 19 C 0.01 0.23 5.47 -3.71 -0.02 0.21 16 20 C 0.07 0.90 7.01 37.21 0.26 1.16 16 21 O -0.39 -5.48 10.83 -35.23 -0.38 -5.87 16 22 C 0.07 0.74 7.01 37.21 0.26 1.00 16 23 C 0.02 0.23 5.62 -3.71 -0.02 0.21 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.02 0.48 6.32 -51.93 -0.33 0.16 16 26 H 0.02 0.52 6.30 -51.93 -0.33 0.19 16 27 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 28 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16 29 H 0.06 1.10 6.03 -51.93 -0.31 0.78 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.90 7.95 -51.93 -0.41 0.48 16 35 H 0.07 1.09 7.81 -51.93 -0.41 0.68 16 36 H 0.04 0.67 7.45 -51.93 -0.39 0.28 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.68 6.49 -51.92 -0.34 1.35 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 333.57 15.07 5.03 5.03 Total: -1.00 -29.37 333.57 -10.16 -39.53 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.71 Total: 0.92 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -0.57 Total: -11.14 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -1.51 Total: -44.94 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.38 Total: -5.87 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.37 -10.16 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174015061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.348 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds