Wall clock time and date at job start Mon Mar 30 2020 01:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00263 * 2 1 4 4 H 1.48504 * 109.46616 * 269.99550 * 3 2 1 5 5 H 1.48493 * 109.47321 * 29.99259 * 3 2 1 6 6 H 1.48500 * 109.47100 * 149.99999 * 3 2 1 7 7 C 1.37876 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00316 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47219 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47024 * 185.92485 * 10 9 7 12 12 C 1.47902 * 110.99595 * 68.54748 * 11 10 9 13 13 C 1.54000 * 107.05594 * 214.15190 * 12 11 10 14 14 C 1.54603 * 105.13722 * 1.22430 * 13 12 11 15 15 C 1.48526 * 111.00286 * 311.14525 * 11 10 9 16 16 H 1.09009 * 110.66526 * 41.29111 * 15 11 10 17 17 C 1.52992 * 110.67222 * 278.15519 * 15 11 10 18 18 N 1.46902 * 109.47396 * 174.84246 * 17 15 11 19 19 C 1.47010 * 111.00053 * 288.84598 * 18 17 15 20 20 C 1.53099 * 109.25926 * 177.60560 * 19 18 17 21 21 O 1.43020 * 109.25465 * 56.85127 * 20 19 18 22 22 C 1.43009 * 113.73833 * 301.32751 * 21 20 19 23 23 C 1.47015 * 110.99834 * 165.21419 * 18 17 15 24 24 H 0.97003 * 119.99786 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46659 * 59.99492 * 9 7 2 26 26 H 1.08997 * 109.47210 * 300.00331 * 9 7 2 27 27 H 1.08994 * 109.47431 * 305.93357 * 10 9 7 28 28 H 1.09005 * 109.46723 * 65.93153 * 10 9 7 29 29 H 1.08995 * 109.91750 * 333.50041 * 12 11 10 30 30 H 1.09001 * 109.91899 * 94.80512 * 12 11 10 31 31 H 1.08997 * 110.30522 * 120.13678 * 13 12 11 32 32 H 1.08993 * 110.31215 * 242.30875 * 13 12 11 33 33 H 1.08995 * 110.71892 * 140.31268 * 14 13 12 34 34 H 1.08994 * 110.72395 * 263.41737 * 14 13 12 35 35 H 1.09000 * 109.47122 * 294.84527 * 17 15 11 36 36 H 1.09002 * 109.47309 * 54.84225 * 17 15 11 37 37 H 1.08999 * 109.51033 * 297.54497 * 19 18 17 38 38 H 1.09010 * 109.50340 * 57.67602 * 19 18 17 39 39 H 1.09005 * 109.50519 * 296.91741 * 20 19 18 40 40 H 1.08993 * 109.50899 * 176.78698 * 20 19 18 41 41 H 1.08997 * 109.51310 * 298.74109 * 22 21 20 42 42 H 1.09005 * 109.54281 * 178.62737 * 22 21 20 43 43 H 1.08998 * 109.50769 * 302.32703 * 23 18 17 44 44 H 1.09002 * 109.50661 * 62.45996 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6998 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 7 1.5161 -4.9295 -0.1424 12 6 0.9173 -5.0474 -1.4897 13 6 -0.4127 -5.8067 -1.3280 14 6 -0.5401 -6.0794 0.1884 15 6 0.3811 -5.0015 0.8130 16 1 -0.1338 -4.0425 0.8716 17 6 0.8662 -5.4412 2.1957 18 7 -0.2513 -5.3848 3.1475 19 6 -0.6161 -3.9931 3.4499 20 6 -1.8197 -3.9808 4.3960 21 8 -1.5007 -4.7252 5.5748 22 6 -1.1413 -6.0852 5.3172 23 6 0.0692 -6.1189 4.3803 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8902 27 1 2.9395 -3.5465 -0.8315 28 1 2.7997 -3.6659 0.9389 29 1 0.7308 -4.0555 -1.9012 30 1 1.5857 -5.6050 -2.1457 31 1 -1.2438 -5.1915 -1.6729 32 1 -0.3817 -6.7460 -1.8800 33 1 -1.5700 -5.9452 0.5192 34 1 -0.1859 -7.0812 0.4313 35 1 1.2452 -6.4617 2.1403 36 1 1.6622 -4.7757 2.5301 37 1 0.2262 -3.4912 3.9259 38 1 -0.8742 -3.4756 2.5259 39 1 -2.6774 -4.4349 3.8997 40 1 -2.0582 -2.9527 4.6682 41 1 -1.9792 -6.6005 4.8477 42 1 -0.8893 -6.5798 6.2553 43 1 0.3114 -7.1530 4.1356 44 1 0.9225 -5.6509 4.8712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174015061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:38 Heat of formation + Delta-G solvation = -59.979919 kcal Electronic energy + Delta-G solvation = -21959.525381 eV Core-core repulsion = 18910.627961 eV Total energy + Delta-G solvation = -3048.897421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.90867 -39.89977 -36.69416 -35.52324 -33.57218 -32.19291 -31.40414 -30.11282 -28.02280 -26.26072 -25.05998 -24.73963 -23.46846 -21.85789 -21.22054 -20.18174 -18.75706 -17.66521 -17.11542 -16.73165 -16.64097 -16.23000 -16.06289 -15.95556 -15.70718 -15.20889 -14.84506 -14.59849 -14.41714 -13.79610 -13.66737 -13.40066 -13.20601 -12.89808 -12.69974 -12.56065 -12.51350 -12.35505 -12.10868 -12.07815 -11.84324 -11.72282 -11.69601 -11.47303 -11.35056 -11.13935 -10.65639 -10.55493 -9.46166 -9.15650 -8.24363 -6.35847 1.35720 1.36315 1.47456 2.35966 2.60183 2.93149 3.08080 3.34722 3.76035 3.84622 3.92125 3.99973 4.03717 4.15897 4.20941 4.30129 4.37664 4.47263 4.48380 4.54958 4.61013 4.68726 4.72584 4.77488 4.79541 4.83093 4.90891 4.95969 5.01601 5.04987 5.08050 5.15243 5.29057 5.35465 5.44160 5.57451 5.69385 5.84829 5.95941 6.06430 6.13590 6.16898 6.31256 6.79824 7.33080 8.86237 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.006222 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.054203 B = 4498.749524 C = 5782.840733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.008 3.992 10 C 0.062 3.938 11 N -0.513 5.513 12 C 0.029 3.971 13 C -0.126 4.126 14 C -0.093 4.093 15 C 0.058 3.942 16 H 0.039 0.961 17 C 0.085 3.915 18 N -0.529 5.529 19 C 0.021 3.979 20 C 0.073 3.927 21 O -0.404 6.404 22 C 0.062 3.938 23 C 0.017 3.983 24 H 0.263 0.737 25 H -0.008 1.008 26 H -0.002 1.002 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.024 0.976 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.012 0.988 37 H 0.021 0.979 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 -14.754 5.883 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.075 0.925 9 C -0.030 4.030 10 C -0.066 4.066 11 N -0.236 5.236 12 C -0.099 4.099 13 C -0.164 4.164 14 C -0.131 4.131 15 C -0.051 4.051 16 H 0.057 0.943 17 C -0.043 4.043 18 N -0.254 5.254 19 C -0.108 4.108 20 C -0.004 4.004 21 O -0.323 6.323 22 C -0.014 4.014 23 C -0.111 4.111 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.016 0.984 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.030 0.970 37 H 0.039 0.961 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.127 0.873 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.838 -15.222 5.942 16.585 hybrid contribution 0.617 2.544 -0.297 2.635 sum -2.221 -12.677 5.645 14.054 Atomic orbital electron populations 1.70087 1.07624 1.27684 1.51332 1.25895 0.95726 1.03053 0.94571 0.85518 0.78723 0.78736 0.78533 1.19727 1.20649 1.18956 1.21585 0.93375 0.92353 1.50940 0.92519 1.19461 0.94954 0.93764 0.94799 1.22115 0.96475 0.87555 1.00501 1.64935 1.22501 1.32443 1.03708 1.22890 0.96530 0.98964 0.91481 1.22398 0.95711 1.00801 0.97513 1.22306 0.98890 0.98382 0.93552 1.22801 0.91501 0.98301 0.92490 0.94317 1.21797 0.90470 1.01352 0.90658 1.62169 1.38414 1.12398 1.12459 1.22714 0.98327 0.90089 0.99661 1.22613 0.95317 0.97274 0.85220 1.87943 1.88574 1.24431 1.31358 1.22864 0.95932 0.82580 1.00034 1.22905 0.97845 1.00309 0.90015 0.92799 0.99017 0.98422 0.92088 0.92482 0.95760 0.89404 0.92542 0.88747 0.91097 0.89663 0.88646 0.96957 0.96110 0.91518 0.91321 0.88111 0.91373 0.86148 0.87272 0.95173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 2 C 0.01 0.34 5.46 84.65 0.46 0.81 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.54 -31.27 9.11 25.60 0.23 -31.03 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 9 C 0.01 0.44 3.99 29.85 0.12 0.55 16 10 C 0.06 2.69 5.23 86.30 0.45 3.14 16 11 N -0.51 -18.78 5.23 -858.29 -4.49 -23.27 16 12 C 0.03 1.00 6.44 86.45 0.56 1.55 16 13 C -0.13 -3.51 6.93 31.48 0.22 -3.30 16 14 C -0.09 -2.60 6.42 31.80 0.20 -2.40 16 15 C 0.06 2.00 2.05 45.26 0.09 2.09 16 16 H 0.04 1.68 3.78 -2.38 -0.01 1.67 16 17 C 0.09 2.65 4.66 86.30 0.40 3.05 16 18 N -0.53 -14.99 4.61 -895.20 -4.12 -19.11 16 19 C 0.02 0.68 5.47 86.32 0.47 1.15 16 20 C 0.07 2.00 7.01 72.02 0.50 2.50 16 21 O -0.40 -10.90 10.83 -148.98 -1.61 -12.51 16 22 C 0.06 1.26 7.01 72.02 0.50 1.76 16 23 C 0.02 0.38 5.62 86.32 0.49 0.87 16 24 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 25 H -0.01 -0.48 6.32 -2.39 -0.02 -0.50 16 26 H 0.00 -0.14 6.30 -2.39 -0.02 -0.15 16 27 H 0.06 2.63 8.10 -2.39 -0.02 2.61 16 28 H 0.06 2.48 7.62 -2.38 -0.02 2.47 16 29 H 0.02 0.97 6.03 -2.39 -0.01 0.96 16 30 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 2.07 7.95 -2.39 -0.02 2.05 16 35 H 0.10 2.56 7.81 -2.39 -0.02 2.55 16 36 H 0.01 0.44 7.45 -2.39 -0.02 0.42 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 2.56 6.49 -2.38 -0.02 2.54 16 39 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.11 1.90 8.05 -2.39 -0.02 1.88 16 44 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -65.02 333.57 -2.25 -67.27 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.95 Total: 16.16 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 4.71 Total: -19.25 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -8.33 Total: -98.31 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -1.61 Total: -12.51 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -65.02 -2.25 -67.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174015061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.294 kcal (2) G-P(sol) polarization free energy of solvation -65.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds