Wall clock time and date at job start Mon Mar 30 2020 01:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 C 1.53003 * 109.47280 * 119.99976 * 2 1 3 5 5 C 1.52997 * 109.47223 * 174.48898 * 4 2 1 6 6 H 1.09001 * 109.47293 * 54.12289 * 5 4 2 7 7 C 1.53005 * 109.47395 * 174.12037 * 5 4 2 8 8 C 1.53001 * 109.47228 * 294.12155 * 5 4 2 9 9 C 1.50705 * 109.46906 * 174.99871 * 8 5 4 10 10 O 1.20825 * 120.00332 * 359.97438 * 9 8 5 11 11 O 1.34232 * 119.99650 * 180.02562 * 9 8 5 12 12 C 1.45202 * 116.99662 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47157 * 180.02562 * 12 11 9 14 14 C 1.50702 * 115.55118 * 299.97324 * 13 12 11 15 15 H 1.08001 * 120.00408 * 95.18673 * 14 13 12 16 16 C 1.37876 * 119.99428 * 274.91477 * 14 13 12 17 17 N 1.31519 * 120.00416 * 355.47914 * 16 14 13 18 18 Si 1.86803 * 119.99890 * 175.48088 * 16 14 13 19 19 H 1.48502 * 109.46820 * 89.99870 * 18 16 14 20 20 H 1.48501 * 109.47163 * 209.99731 * 18 16 14 21 21 H 1.48496 * 109.47163 * 329.99992 * 18 16 14 22 22 C 1.53004 * 117.49877 * 85.63633 * 13 12 11 23 23 C 1.53002 * 117.50205 * 154.29805 * 13 12 11 24 24 H 1.09000 * 109.46970 * 299.99516 * 1 2 3 25 25 H 1.08996 * 109.47495 * 60.00373 * 1 2 3 26 26 H 1.09009 * 109.47226 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47125 * 239.99724 * 2 1 3 28 28 H 1.09001 * 109.47186 * 65.57547 * 3 2 1 29 29 H 1.09005 * 109.47418 * 185.57140 * 3 2 1 30 30 H 1.08995 * 109.47333 * 305.57314 * 3 2 1 31 31 H 1.08996 * 109.46898 * 54.49272 * 4 2 1 32 32 H 1.08996 * 109.47154 * 294.49194 * 4 2 1 33 33 H 1.08996 * 109.47222 * 175.35043 * 7 5 4 34 34 H 1.09001 * 109.46736 * 295.35028 * 7 5 4 35 35 H 1.08998 * 109.46654 * 55.35025 * 7 5 4 36 36 H 1.08994 * 109.47282 * 55.00203 * 8 5 4 37 37 H 1.08998 * 109.47553 * 294.99934 * 8 5 4 38 38 H 1.08993 * 109.47516 * 59.99736 * 12 11 9 39 39 H 1.09006 * 109.46933 * 299.99441 * 12 11 9 40 40 H 0.96999 * 120.00348 * 180.02562 * 17 16 14 41 41 H 1.09000 * 117.49705 * 215.00313 * 22 13 12 42 42 H 1.09005 * 117.50053 * 0.02608 * 22 13 12 43 43 H 1.09001 * 117.49224 * 359.97438 * 23 13 12 44 44 H 1.08995 * 117.49980 * 144.97299 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5637 -0.8423 1.1819 6 1 4.0001 0.1443 1.0263 7 6 4.0872 -1.4303 2.4939 8 6 3.9516 -1.7604 0.0210 9 6 5.4516 -1.7825 -0.1223 10 8 6.1398 -1.1305 0.6268 11 8 6.0231 -2.5258 -1.0829 12 6 7.4727 -2.4995 -1.1619 13 6 7.9374 -3.3995 -2.3086 14 6 7.5454 -4.8503 -2.1961 15 1 6.6536 -5.2085 -2.6889 16 6 8.3282 -5.7214 -1.4687 17 7 9.4626 -5.3076 -0.9474 18 14 7.7777 -7.4896 -1.2234 19 1 8.3051 -8.3299 -2.3284 20 1 8.2965 -7.9942 0.0733 21 1 6.2940 -7.5501 -1.2203 22 6 7.9884 -2.7882 -3.7103 23 6 9.2872 -3.0805 -2.9547 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.7604 1.9267 0.9357 29 1 3.1254 1.4441 -0.0998 30 1 1.5974 1.9843 -0.8358 31 1 1.5984 -1.7165 1.2999 32 1 1.7595 -0.1537 2.1365 33 1 5.1620 -1.5935 2.4157 34 1 3.8834 -0.7366 3.3097 35 1 3.5889 -2.3794 2.6910 36 1 3.5040 -1.3893 -0.9009 37 1 3.5907 -2.7695 0.2196 38 1 7.8943 -2.8593 -0.2234 39 1 7.8083 -1.4784 -1.3431 40 1 10.0136 -5.9206 -0.4360 41 1 7.7384 -3.4354 -4.5510 42 1 7.6913 -1.7447 -3.8154 43 1 9.8439 -2.2292 -2.5629 44 1 9.8918 -3.9200 -3.2978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174730910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:11 Heat of formation + Delta-G solvation = -98.500153 kcal Electronic energy + Delta-G solvation = -21037.598732 eV Core-core repulsion = 17954.738198 eV Total energy + Delta-G solvation = -3082.860534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.94751 -37.82659 -36.65226 -35.22322 -33.52407 -31.93894 -28.69894 -27.33183 -26.64820 -26.42854 -25.15014 -21.50770 -21.08503 -20.45307 -19.30202 -19.12268 -17.06043 -16.57372 -15.82542 -15.65359 -14.82044 -14.74327 -14.51856 -14.22445 -13.81965 -13.27315 -13.20513 -12.90468 -12.50274 -12.38337 -12.17966 -11.84204 -11.81448 -11.59411 -11.49564 -11.35407 -11.09068 -10.95067 -10.86114 -10.60935 -10.53587 -10.39247 -10.37166 -10.24248 -9.86942 -9.76154 -9.41751 -8.93440 -8.42779 -8.16742 -6.05198 -4.10904 2.82534 3.28640 3.35891 3.39587 3.42607 4.39831 4.58011 4.72058 4.78862 4.91821 5.17902 5.19833 5.24251 5.34619 5.46369 5.47086 5.50107 5.62989 5.66326 5.72653 5.75690 5.81385 5.86217 5.93786 5.99578 6.01790 6.07766 6.16253 6.24136 6.29111 6.33940 6.44209 6.49186 6.54004 6.69796 6.76532 7.06252 7.27618 7.39167 7.54436 7.87157 8.37696 8.51419 8.90440 9.54619 11.03580 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.004332 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.705291 B = 6462.273885 C = 6857.373161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.150 4.150 4 C -0.109 4.109 5 C -0.080 4.080 6 H 0.081 0.919 7 C -0.155 4.155 8 C -0.114 4.114 9 C 0.452 3.548 10 O -0.523 6.523 11 O -0.337 6.337 12 C 0.117 3.883 13 C 0.034 3.966 14 C -0.487 4.487 15 H 0.062 0.938 16 C 0.068 3.932 17 N -0.882 5.882 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.208 4.208 23 C -0.140 4.140 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.261 0.739 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.069 9.439 2.844 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.207 4.207 4 C -0.146 4.146 5 C -0.099 4.099 6 H 0.099 0.901 7 C -0.213 4.213 8 C -0.151 4.151 9 C 0.295 3.705 10 O -0.414 6.414 11 O -0.252 6.252 12 C 0.043 3.957 13 C 0.033 3.967 14 C -0.524 4.524 15 H 0.080 0.920 16 C -0.135 4.135 17 N -0.519 5.519 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.245 4.245 23 C -0.177 4.177 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.661 9.542 3.156 16.960 hybrid contribution 0.003 -0.931 0.271 0.970 sum -13.659 8.610 3.426 16.506 Atomic orbital electron populations 1.21838 0.95423 1.01631 1.01497 1.21225 0.95503 0.96561 0.98923 1.21897 1.01451 0.95898 1.01456 1.21718 0.94557 1.00631 0.97700 1.21015 0.95119 0.99501 0.94241 0.90073 1.21974 1.03167 1.00078 0.96033 1.21514 0.89269 1.03152 1.01196 1.23635 0.92042 0.76454 0.78321 1.90570 1.65455 1.42112 1.43243 1.86542 1.26281 1.62152 1.50224 1.22815 0.74047 0.97274 1.01524 1.18788 0.96657 0.94095 0.87121 1.20364 1.09323 0.90552 1.32184 0.91952 1.25012 0.94576 0.98558 0.95352 1.70007 1.11589 1.35552 1.34765 0.86602 0.79159 0.84779 0.77560 1.20617 1.21188 1.19698 1.23029 1.04422 0.98917 0.98104 1.22514 0.90575 1.00902 1.03752 0.92914 0.92864 0.92711 0.90760 0.92836 0.92280 0.92947 0.91706 0.91622 0.90666 0.92993 0.93178 0.88096 0.88017 0.91168 0.94322 0.92968 0.90128 0.91670 0.91826 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.10 -0.92 2.80 -90.62 -0.25 -1.18 16 3 C -0.15 -1.34 8.83 37.15 0.33 -1.01 16 4 C -0.11 -1.03 4.14 -26.73 -0.11 -1.14 16 5 C -0.08 -0.97 1.91 -90.62 -0.17 -1.14 16 6 H 0.08 1.05 6.26 -51.93 -0.33 0.73 16 7 C -0.16 -2.01 8.98 37.16 0.33 -1.68 16 8 C -0.11 -1.55 5.17 -27.88 -0.14 -1.70 16 9 C 0.45 8.53 7.64 36.01 0.28 8.81 16 10 O -0.52 -10.88 13.74 -18.75 -0.26 -11.14 16 11 O -0.34 -7.43 10.07 -39.26 -0.40 -7.83 16 12 C 0.12 2.79 5.30 37.16 0.20 2.98 16 13 C 0.03 0.85 1.72 -155.66 -0.27 0.58 16 14 C -0.49 -13.33 8.68 -34.44 -0.30 -13.63 16 15 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 16 C 0.07 1.86 5.43 -17.82 -0.10 1.77 16 17 N -0.88 -24.98 12.65 55.43 0.70 -24.28 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 C -0.21 -4.57 9.95 -26.69 -0.27 -4.84 16 23 C -0.14 -3.30 9.16 -26.69 -0.24 -3.54 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.07 0.69 6.27 -51.93 -0.33 0.37 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.59 6.73 -51.93 -0.35 0.24 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.21 5.89 -51.93 -0.31 0.90 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 1.20 6.28 -51.93 -0.33 0.87 16 37 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.83 8.13 -51.93 -0.42 1.41 16 39 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.09 2.26 8.14 -51.93 -0.42 1.84 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -29.33 354.00 -7.96 -37.29 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.94 Total: 1.01 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.38 Total: -16.50 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.70 Total: -24.28 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.65 Total: -18.96 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.33 -7.96 -37.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174730910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.208 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds