Wall clock time and date at job start Mon Mar 30 2020 01:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 C 1.53003 * 109.47280 * 119.99976 * 2 1 3 5 5 C 1.52997 * 109.47223 * 174.48898 * 4 2 1 6 6 H 1.09001 * 109.47293 * 54.12289 * 5 4 2 7 7 C 1.53005 * 109.47395 * 174.12037 * 5 4 2 8 8 C 1.53001 * 109.47228 * 294.12155 * 5 4 2 9 9 C 1.50705 * 109.46906 * 174.99871 * 8 5 4 10 10 O 1.20825 * 120.00332 * 359.97438 * 9 8 5 11 11 O 1.34232 * 119.99650 * 180.02562 * 9 8 5 12 12 C 1.45202 * 116.99662 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47157 * 180.02562 * 12 11 9 14 14 C 1.50702 * 115.55118 * 299.97324 * 13 12 11 15 15 H 1.08001 * 120.00408 * 95.18673 * 14 13 12 16 16 C 1.37876 * 119.99428 * 274.91477 * 14 13 12 17 17 N 1.31519 * 120.00416 * 355.47914 * 16 14 13 18 18 Si 1.86803 * 119.99890 * 175.48088 * 16 14 13 19 19 H 1.48502 * 109.46820 * 89.99870 * 18 16 14 20 20 H 1.48501 * 109.47163 * 209.99731 * 18 16 14 21 21 H 1.48496 * 109.47163 * 329.99992 * 18 16 14 22 22 C 1.53004 * 117.49877 * 85.63633 * 13 12 11 23 23 C 1.53002 * 117.50205 * 154.29805 * 13 12 11 24 24 H 1.09000 * 109.46970 * 299.99516 * 1 2 3 25 25 H 1.08996 * 109.47495 * 60.00373 * 1 2 3 26 26 H 1.09009 * 109.47226 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47125 * 239.99724 * 2 1 3 28 28 H 1.09001 * 109.47186 * 65.57547 * 3 2 1 29 29 H 1.09005 * 109.47418 * 185.57140 * 3 2 1 30 30 H 1.08995 * 109.47333 * 305.57314 * 3 2 1 31 31 H 1.08996 * 109.46898 * 54.49272 * 4 2 1 32 32 H 1.08996 * 109.47154 * 294.49194 * 4 2 1 33 33 H 1.08996 * 109.47222 * 175.35043 * 7 5 4 34 34 H 1.09001 * 109.46736 * 295.35028 * 7 5 4 35 35 H 1.08998 * 109.46654 * 55.35025 * 7 5 4 36 36 H 1.08994 * 109.47282 * 55.00203 * 8 5 4 37 37 H 1.08998 * 109.47553 * 294.99934 * 8 5 4 38 38 H 1.08993 * 109.47516 * 59.99736 * 12 11 9 39 39 H 1.09006 * 109.46933 * 299.99441 * 12 11 9 40 40 H 0.96999 * 120.00348 * 180.02562 * 17 16 14 41 41 H 1.09000 * 117.49705 * 215.00313 * 22 13 12 42 42 H 1.09005 * 117.50053 * 0.02608 * 22 13 12 43 43 H 1.09001 * 117.49224 * 359.97438 * 23 13 12 44 44 H 1.08995 * 117.49980 * 144.97299 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5637 -0.8423 1.1819 6 1 4.0001 0.1443 1.0263 7 6 4.0872 -1.4303 2.4939 8 6 3.9516 -1.7604 0.0210 9 6 5.4516 -1.7825 -0.1223 10 8 6.1398 -1.1305 0.6268 11 8 6.0231 -2.5258 -1.0829 12 6 7.4727 -2.4995 -1.1619 13 6 7.9374 -3.3995 -2.3086 14 6 7.5454 -4.8503 -2.1961 15 1 6.6536 -5.2085 -2.6889 16 6 8.3282 -5.7214 -1.4687 17 7 9.4626 -5.3076 -0.9474 18 14 7.7777 -7.4896 -1.2234 19 1 8.3051 -8.3299 -2.3284 20 1 8.2965 -7.9942 0.0733 21 1 6.2940 -7.5501 -1.2203 22 6 7.9884 -2.7882 -3.7103 23 6 9.2872 -3.0805 -2.9547 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.7604 1.9267 0.9357 29 1 3.1254 1.4441 -0.0998 30 1 1.5974 1.9843 -0.8358 31 1 1.5984 -1.7165 1.2999 32 1 1.7595 -0.1537 2.1365 33 1 5.1620 -1.5935 2.4157 34 1 3.8834 -0.7366 3.3097 35 1 3.5889 -2.3794 2.6910 36 1 3.5040 -1.3893 -0.9009 37 1 3.5907 -2.7695 0.2196 38 1 7.8943 -2.8593 -0.2234 39 1 7.8083 -1.4784 -1.3431 40 1 10.0136 -5.9206 -0.4360 41 1 7.7384 -3.4354 -4.5510 42 1 7.6913 -1.7447 -3.8154 43 1 9.8439 -2.2292 -2.5629 44 1 9.8918 -3.9200 -3.2978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174730910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:10 Heat of formation + Delta-G solvation = -111.716168 kcal Electronic energy + Delta-G solvation = -21038.171822 eV Core-core repulsion = 17954.738198 eV Total energy + Delta-G solvation = -3083.433624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.47979 -39.02331 -38.20964 -36.88970 -34.46433 -34.01496 -30.02331 -28.23363 -27.95821 -27.46524 -27.11565 -23.05120 -22.57939 -21.48217 -21.19652 -20.15739 -18.59638 -18.35012 -17.43139 -17.16728 -16.61838 -15.98106 -15.65183 -15.39242 -15.15569 -14.80487 -14.24360 -14.19228 -13.79035 -13.62818 -13.48729 -13.18169 -12.99732 -12.85548 -12.83369 -12.73474 -12.40742 -12.35437 -12.25313 -12.08341 -11.94946 -11.64079 -11.62132 -11.41471 -11.25488 -11.19071 -10.99543 -10.91775 -10.44464 -10.06488 -8.13352 -6.24989 1.31369 1.40835 1.42534 1.52719 1.90750 2.42103 3.15253 3.42327 3.68195 3.83738 3.86298 4.12896 4.14248 4.17099 4.29974 4.37321 4.44314 4.49805 4.63214 4.64666 4.68242 4.71030 4.84553 4.85071 4.90222 4.96308 4.98063 5.04851 5.11991 5.15915 5.18314 5.19810 5.29053 5.40608 5.44314 5.47866 5.58673 5.59603 5.61068 5.73964 5.81849 6.35628 6.79904 6.90988 7.43443 8.94937 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021423 B = 0.004332 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.705291 B = 6462.273885 C = 6857.373161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C -0.150 4.150 4 C -0.100 4.100 5 C -0.075 4.075 6 H 0.070 0.930 7 C -0.155 4.155 8 C -0.106 4.106 9 C 0.445 3.555 10 O -0.546 6.546 11 O -0.350 6.350 12 C 0.129 3.871 13 C 0.001 3.999 14 C -0.501 4.501 15 H 0.055 0.945 16 C 0.022 3.978 17 N -0.911 5.911 18 Si 0.951 3.049 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.267 1.267 22 C -0.179 4.179 23 C -0.142 4.142 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.035 0.965 39 H 0.048 0.952 40 H 0.260 0.740 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.321 9.621 2.576 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.207 4.207 4 C -0.137 4.137 5 C -0.094 4.094 6 H 0.088 0.912 7 C -0.212 4.212 8 C -0.143 4.143 9 C 0.291 3.709 10 O -0.437 6.437 11 O -0.266 6.266 12 C 0.055 3.945 13 C 0.000 4.000 14 C -0.539 4.539 15 H 0.073 0.927 16 C -0.178 4.178 17 N -0.548 5.548 18 Si 0.777 3.223 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.216 4.216 23 C -0.180 4.180 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.929 9.732 2.881 18.888 hybrid contribution 0.691 -0.927 0.376 1.216 sum -15.239 8.805 3.256 17.898 Atomic orbital electron populations 1.21811 0.94294 1.02065 1.01976 1.21231 0.96419 0.96235 0.98376 1.21899 1.00534 0.96273 1.02038 1.21660 0.92060 1.01530 0.98495 1.21005 0.97095 0.98309 0.92955 0.91178 1.21951 1.00814 1.01230 0.97226 1.21715 0.84997 1.04547 1.03043 1.24732 0.93991 0.75205 0.77018 1.90563 1.66488 1.42918 1.43759 1.86549 1.25022 1.63346 1.51646 1.22422 0.75415 0.97233 0.99385 1.18906 0.98082 0.93751 0.89215 1.20612 1.09063 0.92063 1.32166 0.92659 1.25729 0.94620 1.02357 0.95142 1.70114 1.12506 1.36761 1.35449 0.85658 0.78915 0.80270 0.77488 1.19831 1.21125 1.19105 1.23037 1.02129 1.00156 0.96318 1.22425 0.90618 1.00658 1.04305 0.92399 0.92496 0.92306 0.91098 0.92326 0.93699 0.92339 0.90697 0.90646 0.94334 0.91585 0.92045 0.85827 0.86625 0.94691 0.93331 0.93078 0.89675 0.89106 0.90658 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 2 C -0.10 -1.59 2.80 -10.80 -0.03 -1.62 16 3 C -0.15 -2.39 8.83 71.98 0.64 -1.76 16 4 C -0.10 -1.62 4.14 30.59 0.13 -1.49 16 5 C -0.08 -1.70 1.91 -10.79 -0.02 -1.72 16 6 H 0.07 1.76 6.26 -2.39 -0.01 1.74 16 7 C -0.15 -3.87 8.98 71.98 0.65 -3.22 16 8 C -0.11 -2.72 5.17 29.85 0.15 -2.57 16 9 C 0.45 16.78 7.64 71.24 0.54 17.32 16 10 O -0.55 -23.14 13.74 21.97 0.30 -22.84 16 11 O -0.35 -15.46 10.07 -51.44 -0.52 -15.98 16 12 C 0.13 6.27 5.30 71.98 0.38 6.65 16 13 C 0.00 0.04 1.72 -52.93 -0.09 -0.05 16 14 C -0.50 -27.65 8.68 25.60 0.22 -27.43 16 15 H 0.06 3.04 7.82 -2.91 -0.02 3.02 16 16 C 0.02 1.19 5.43 84.65 0.46 1.65 16 17 N -0.91 -52.49 12.65 21.45 0.27 -52.22 16 18 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 C -0.18 -7.66 9.95 30.62 0.30 -7.36 16 23 C -0.14 -6.72 9.16 30.62 0.28 -6.44 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.07 1.13 6.27 -2.39 -0.01 1.12 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.04 0.84 6.73 -2.38 -0.02 0.82 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.04 1.24 5.89 -2.39 -0.01 1.23 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.12 2.65 6.28 -2.39 -0.02 2.64 16 37 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.03 1.90 8.13 -2.39 -0.02 1.88 16 39 H 0.05 2.20 8.10 -2.38 -0.02 2.18 16 40 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 42 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 43 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.07 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -63.49 354.00 7.30 -56.20 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.94 Total: 18.53 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 4.28 Total: -29.19 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.27 Total: -52.22 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.22 Total: -38.82 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -63.49 7.30 -56.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174730910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.520 kcal (2) G-P(sol) polarization free energy of solvation -63.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds