Wall clock time and date at job start Mon Mar 30 2020 01:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47004 * 2 1 4 4 C 1.53001 * 109.47091 * 120.00206 * 2 1 3 5 5 C 1.53002 * 109.47040 * 175.00186 * 4 2 1 6 6 H 1.08997 * 109.47164 * 54.99449 * 5 4 2 7 7 C 1.53003 * 109.47057 * 294.99678 * 5 4 2 8 8 C 1.53000 * 109.47094 * 174.99988 * 5 4 2 9 9 C 1.50703 * 109.46923 * 184.99927 * 8 5 4 10 10 O 1.20824 * 119.99868 * 359.97438 * 9 8 5 11 11 O 1.34232 * 119.99981 * 180.02562 * 9 8 5 12 12 C 1.45193 * 117.00307 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47629 * 179.97438 * 12 11 9 14 14 C 1.50698 * 115.55091 * 294.88972 * 13 12 11 15 15 H 1.07995 * 120.00548 * 95.15680 * 14 13 12 16 16 C 1.37887 * 119.99607 * 274.88498 * 14 13 12 17 17 N 1.31512 * 119.99742 * 6.38500 * 16 14 13 18 18 Si 1.86792 * 120.00001 * 186.38825 * 16 14 13 19 19 H 1.48497 * 109.47138 * 89.99854 * 18 16 14 20 20 H 1.48507 * 109.46983 * 210.00016 * 18 16 14 21 21 H 1.48507 * 109.47143 * 329.99898 * 18 16 14 22 22 C 1.53001 * 117.49567 * 80.55078 * 13 12 11 23 23 C 1.52997 * 117.50058 * 149.21087 * 13 12 11 24 24 H 1.08997 * 109.47446 * 299.99816 * 1 2 3 25 25 H 1.08996 * 109.47505 * 59.99755 * 1 2 3 26 26 H 1.09003 * 109.47307 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47035 * 239.99840 * 2 1 3 28 28 H 1.09007 * 109.47279 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47343 * 299.99936 * 3 2 1 30 30 H 1.08995 * 109.47315 * 60.00452 * 3 2 1 31 31 H 1.09002 * 109.47065 * 55.00392 * 4 2 1 32 32 H 1.08996 * 109.46920 * 294.99810 * 4 2 1 33 33 H 1.09003 * 109.47057 * 60.00248 * 7 5 4 34 34 H 1.08994 * 109.47272 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47190 * 300.00372 * 7 5 4 36 36 H 1.09001 * 109.47341 * 64.99919 * 8 5 4 37 37 H 1.09000 * 109.47107 * 304.99491 * 8 5 4 38 38 H 1.09004 * 109.47351 * 59.98882 * 12 11 9 39 39 H 1.09010 * 109.46838 * 299.99816 * 12 11 9 40 40 H 0.97004 * 120.00151 * 179.97438 * 17 16 14 41 41 H 1.09003 * 117.50064 * 215.00337 * 22 13 12 42 42 H 1.08997 * 117.50444 * 0.02833 * 22 13 12 43 43 H 1.08997 * 117.50286 * 359.97438 * 23 13 12 44 44 H 1.09000 * 117.49777 * 144.98214 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9953 0.1611 1.0527 7 6 3.9649 -1.7252 0.0126 8 6 4.0851 -1.4394 2.4918 9 6 5.5921 -1.4345 2.4821 10 8 6.1887 -0.9905 1.5299 11 8 6.2716 -1.9245 3.5309 12 6 7.7210 -1.8871 3.4531 13 6 8.3160 -2.4831 4.7304 14 6 8.0408 -1.7134 5.9963 15 1 7.2076 -1.9890 6.6257 16 6 8.8562 -0.6606 6.3540 17 7 9.7957 -0.2477 5.5316 18 14 8.6266 0.1791 8.0067 19 1 9.4693 -0.4959 9.0262 20 1 9.0280 1.6047 7.8977 21 1 7.1997 0.0960 8.4101 22 6 8.3863 -4.0082 4.8321 23 6 9.6652 -3.1953 4.6157 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6054 -1.7199 1.2951 32 1 1.7516 -0.1584 2.1369 33 1 3.5943 -1.2918 -0.9163 34 1 5.0512 -1.8030 -0.0313 35 1 3.5344 -2.7174 0.1478 36 1 3.7257 -2.4644 2.5834 37 1 3.7253 -0.8514 3.3361 38 1 8.0526 -0.8543 3.3457 39 1 8.0536 -2.4668 2.5920 40 1 10.3692 0.4932 5.7830 41 1 8.2336 -4.4546 5.8147 42 1 8.0091 -4.5868 3.9889 43 1 10.1288 -3.2397 3.6303 44 1 10.3540 -3.1068 5.4559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174730922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:14 Heat of formation + Delta-G solvation = -98.899209 kcal Electronic energy + Delta-G solvation = -20847.913997 eV Core-core repulsion = 17765.036158 eV Total energy + Delta-G solvation = -3082.877839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91012 -37.84152 -36.68041 -35.21422 -33.54524 -31.96096 -28.58951 -27.30887 -26.72564 -26.40485 -25.16353 -21.86303 -21.14572 -19.86692 -19.41774 -19.22804 -16.95780 -16.47495 -16.01307 -15.50474 -15.12322 -14.65061 -14.52751 -14.08489 -13.83261 -13.64638 -13.07522 -12.84368 -12.61335 -12.39597 -12.08787 -11.80975 -11.74069 -11.62773 -11.45136 -11.31830 -11.00965 -10.99533 -10.83465 -10.67739 -10.54385 -10.43828 -10.37453 -10.28635 -9.85161 -9.78281 -9.46609 -8.82137 -8.47255 -8.20122 -6.06967 -4.12162 2.84053 3.28449 3.35622 3.38711 3.41934 4.39087 4.60690 4.72438 4.76762 4.97890 5.09219 5.20979 5.23416 5.35587 5.45757 5.50330 5.51297 5.58524 5.66919 5.69822 5.76668 5.79032 5.84182 5.97301 5.98259 6.00292 6.11230 6.13585 6.23790 6.27195 6.34638 6.44902 6.50597 6.55209 6.68411 6.74658 7.02987 7.31833 7.37410 7.50020 7.86388 8.37455 8.52006 8.89530 9.53598 11.02496 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.003969 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.656140 B = 7052.811472 C = 7680.171811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.152 4.152 4 C -0.110 4.110 5 C -0.082 4.082 6 H 0.083 0.917 7 C -0.155 4.155 8 C -0.112 4.112 9 C 0.452 3.548 10 O -0.522 6.522 11 O -0.340 6.340 12 C 0.116 3.884 13 C 0.038 3.962 14 C -0.490 4.490 15 H 0.063 0.937 16 C 0.068 3.932 17 N -0.881 5.881 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.205 4.205 23 C -0.146 4.146 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.261 0.739 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.648 -1.063 -9.186 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.209 4.209 4 C -0.147 4.147 5 C -0.100 4.100 6 H 0.101 0.899 7 C -0.212 4.212 8 C -0.150 4.150 9 C 0.296 3.704 10 O -0.413 6.413 11 O -0.255 6.255 12 C 0.043 3.957 13 C 0.038 3.962 14 C -0.528 4.528 15 H 0.081 0.919 16 C -0.135 4.135 17 N -0.518 5.518 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.243 4.243 23 C -0.184 4.184 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.274 -0.800 -9.454 17.139 hybrid contribution 0.175 0.573 0.805 1.003 sum -14.099 -0.227 -8.649 16.542 Atomic orbital electron populations 1.21843 0.95523 1.01504 1.01555 1.21154 0.95274 0.96510 0.98755 1.21915 1.01690 0.95856 1.01415 1.21701 0.94577 1.00572 0.97885 1.21027 0.94886 1.00665 0.93447 0.89918 1.22013 1.03314 0.98539 0.97347 1.21446 0.88795 1.04317 1.00394 1.23600 0.91604 0.74485 0.80725 1.90569 1.71346 1.43996 1.35354 1.86520 1.23920 1.73225 1.41843 1.22850 0.73507 1.01969 0.97352 1.18776 0.95551 0.88680 0.93239 1.20397 1.13255 1.14323 1.04778 0.91872 1.25019 0.95052 0.96461 0.96948 1.70000 1.19971 1.26660 1.35173 0.86583 0.78606 0.78604 0.84184 1.20571 1.21245 1.19727 1.23002 1.04164 0.96654 1.00453 1.22542 0.91184 1.04343 1.00319 0.92776 0.92963 0.92838 0.90887 0.92053 0.93080 0.92759 0.91805 0.91743 0.92725 0.90816 0.93327 0.88287 0.88038 0.90676 0.94481 0.92914 0.90087 0.91575 0.91670 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.10 -0.87 2.78 -90.62 -0.25 -1.12 16 3 C -0.15 -1.39 8.95 37.15 0.33 -1.06 16 4 C -0.11 -1.04 4.15 -26.73 -0.11 -1.15 16 5 C -0.08 -0.98 1.90 -90.62 -0.17 -1.16 16 6 H 0.08 1.11 6.16 -51.93 -0.32 0.79 16 7 C -0.16 -1.89 8.70 37.16 0.32 -1.56 16 8 C -0.11 -1.52 5.29 -27.88 -0.15 -1.66 16 9 C 0.45 8.57 7.68 36.01 0.28 8.84 16 10 O -0.52 -10.93 13.72 -18.75 -0.26 -11.18 16 11 O -0.34 -7.51 10.16 -39.26 -0.40 -7.91 16 12 C 0.12 2.80 5.28 37.15 0.20 3.00 16 13 C 0.04 0.95 1.61 -155.67 -0.25 0.70 16 14 C -0.49 -13.43 8.77 -34.44 -0.30 -13.74 16 15 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 16 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 17 N -0.88 -24.99 12.93 55.43 0.72 -24.27 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.21 -4.51 9.96 -26.69 -0.27 -4.78 16 23 C -0.15 -3.43 9.43 -26.69 -0.25 -3.68 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 28 H 0.06 0.63 6.46 -51.93 -0.34 0.29 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.59 6.46 -51.93 -0.34 0.25 16 34 H 0.07 1.11 5.96 -51.93 -0.31 0.80 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 2.00 8.13 -51.93 -0.42 1.58 16 39 H 0.04 0.84 8.09 -51.92 -0.42 0.42 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -29.41 354.46 -7.93 -37.34 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.94 Total: 0.97 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -0.38 Total: -16.37 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.72 Total: -24.27 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.66 Total: -19.09 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.41 -7.93 -37.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174730922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.557 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds