Wall clock time and date at job start Mon Mar 30 2020 01:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47004 * 2 1 4 4 C 1.53001 * 109.47091 * 120.00206 * 2 1 3 5 5 C 1.53002 * 109.47040 * 175.00186 * 4 2 1 6 6 H 1.08997 * 109.47164 * 54.99449 * 5 4 2 7 7 C 1.53003 * 109.47057 * 294.99678 * 5 4 2 8 8 C 1.53000 * 109.47094 * 174.99988 * 5 4 2 9 9 C 1.50703 * 109.46923 * 184.99927 * 8 5 4 10 10 O 1.20824 * 119.99868 * 359.97438 * 9 8 5 11 11 O 1.34232 * 119.99981 * 180.02562 * 9 8 5 12 12 C 1.45193 * 117.00307 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47629 * 179.97438 * 12 11 9 14 14 C 1.50698 * 115.55091 * 294.88972 * 13 12 11 15 15 H 1.07995 * 120.00548 * 95.15680 * 14 13 12 16 16 C 1.37887 * 119.99607 * 274.88498 * 14 13 12 17 17 N 1.31512 * 119.99742 * 6.38500 * 16 14 13 18 18 Si 1.86792 * 120.00001 * 186.38825 * 16 14 13 19 19 H 1.48497 * 109.47138 * 89.99854 * 18 16 14 20 20 H 1.48507 * 109.46983 * 210.00016 * 18 16 14 21 21 H 1.48507 * 109.47143 * 329.99898 * 18 16 14 22 22 C 1.53001 * 117.49567 * 80.55078 * 13 12 11 23 23 C 1.52997 * 117.50058 * 149.21087 * 13 12 11 24 24 H 1.08997 * 109.47446 * 299.99816 * 1 2 3 25 25 H 1.08996 * 109.47505 * 59.99755 * 1 2 3 26 26 H 1.09003 * 109.47307 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47035 * 239.99840 * 2 1 3 28 28 H 1.09007 * 109.47279 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47343 * 299.99936 * 3 2 1 30 30 H 1.08995 * 109.47315 * 60.00452 * 3 2 1 31 31 H 1.09002 * 109.47065 * 55.00392 * 4 2 1 32 32 H 1.08996 * 109.46920 * 294.99810 * 4 2 1 33 33 H 1.09003 * 109.47057 * 60.00248 * 7 5 4 34 34 H 1.08994 * 109.47272 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47190 * 300.00372 * 7 5 4 36 36 H 1.09001 * 109.47341 * 64.99919 * 8 5 4 37 37 H 1.09000 * 109.47107 * 304.99491 * 8 5 4 38 38 H 1.09004 * 109.47351 * 59.98882 * 12 11 9 39 39 H 1.09010 * 109.46838 * 299.99816 * 12 11 9 40 40 H 0.97004 * 120.00151 * 179.97438 * 17 16 14 41 41 H 1.09003 * 117.50064 * 215.00337 * 22 13 12 42 42 H 1.08997 * 117.50444 * 0.02833 * 22 13 12 43 43 H 1.08997 * 117.50286 * 359.97438 * 23 13 12 44 44 H 1.09000 * 117.49777 * 144.98214 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9953 0.1611 1.0527 7 6 3.9649 -1.7252 0.0126 8 6 4.0851 -1.4394 2.4918 9 6 5.5921 -1.4345 2.4821 10 8 6.1887 -0.9905 1.5299 11 8 6.2716 -1.9245 3.5309 12 6 7.7210 -1.8871 3.4531 13 6 8.3160 -2.4831 4.7304 14 6 8.0408 -1.7134 5.9963 15 1 7.2076 -1.9890 6.6257 16 6 8.8562 -0.6606 6.3540 17 7 9.7957 -0.2477 5.5316 18 14 8.6266 0.1791 8.0067 19 1 9.4693 -0.4959 9.0262 20 1 9.0280 1.6047 7.8977 21 1 7.1997 0.0960 8.4101 22 6 8.3863 -4.0082 4.8321 23 6 9.6652 -3.1953 4.6157 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6054 -1.7199 1.2951 32 1 1.7516 -0.1584 2.1369 33 1 3.5943 -1.2918 -0.9163 34 1 5.0512 -1.8030 -0.0313 35 1 3.5344 -2.7174 0.1478 36 1 3.7257 -2.4644 2.5834 37 1 3.7253 -0.8514 3.3361 38 1 8.0526 -0.8543 3.3457 39 1 8.0536 -2.4668 2.5920 40 1 10.3692 0.4932 5.7830 41 1 8.2336 -4.4546 5.8147 42 1 8.0091 -4.5868 3.9889 43 1 10.1288 -3.2397 3.6303 44 1 10.3540 -3.1068 5.4559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174730922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:13 Heat of formation + Delta-G solvation = -112.260240 kcal Electronic energy + Delta-G solvation = -20848.493375 eV Core-core repulsion = 17765.036158 eV Total energy + Delta-G solvation = -3083.457217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45350 -39.01287 -38.23997 -36.88489 -34.49925 -34.03542 -29.88794 -28.21441 -27.96253 -27.51834 -27.11775 -23.15714 -22.81369 -21.20337 -21.05798 -20.28732 -18.52154 -18.28352 -17.48006 -17.09177 -16.57054 -16.17135 -15.67392 -15.59350 -14.90414 -14.78433 -14.45151 -14.15195 -13.79647 -13.67049 -13.48104 -13.10678 -12.97059 -12.93615 -12.79779 -12.60669 -12.42189 -12.33531 -12.20293 -12.10352 -11.88843 -11.66524 -11.62291 -11.52418 -11.26708 -11.18346 -11.02308 -10.78597 -10.49793 -10.08704 -8.14881 -6.26347 1.32676 1.41524 1.42472 1.52605 1.90746 2.41825 3.14151 3.41651 3.70964 3.78962 3.92949 4.11998 4.14209 4.19593 4.31944 4.39096 4.46163 4.51667 4.62050 4.65226 4.68129 4.72679 4.83080 4.85151 4.87446 4.95084 4.99709 5.05554 5.08579 5.15855 5.17096 5.20044 5.33275 5.35218 5.45767 5.48383 5.57068 5.58785 5.63451 5.73580 5.82353 6.34926 6.79177 6.91762 7.42546 8.94099 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.003969 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.656140 B = 7052.811472 C = 7680.171811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.152 4.152 4 C -0.103 4.103 5 C -0.078 4.078 6 H 0.062 0.938 7 C -0.152 4.152 8 C -0.104 4.104 9 C 0.445 3.555 10 O -0.547 6.547 11 O -0.352 6.352 12 C 0.130 3.870 13 C 0.004 3.996 14 C -0.505 4.505 15 H 0.056 0.944 16 C 0.022 3.978 17 N -0.911 5.911 18 Si 0.954 3.046 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.266 1.266 22 C -0.177 4.177 23 C -0.149 4.149 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.037 0.963 39 H 0.045 0.955 40 H 0.261 0.739 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.827 -1.834 -8.942 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.210 4.210 4 C -0.140 4.140 5 C -0.097 4.097 6 H 0.081 0.919 7 C -0.209 4.209 8 C -0.141 4.141 9 C 0.290 3.710 10 O -0.438 6.438 11 O -0.268 6.268 12 C 0.056 3.944 13 C 0.004 3.996 14 C -0.543 4.543 15 H 0.074 0.926 16 C -0.178 4.178 17 N -0.548 5.548 18 Si 0.779 3.221 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.191 1.191 22 C -0.214 4.214 23 C -0.186 4.186 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.469 -1.581 -9.212 18.937 hybrid contribution 0.829 0.817 0.659 1.337 sum -15.640 -0.764 -8.554 17.842 Atomic orbital electron populations 1.21811 0.94265 1.02122 1.01926 1.21152 0.96260 0.95885 0.98344 1.21921 1.00594 0.96573 1.01883 1.21659 0.92172 1.01694 0.98498 1.21017 0.96740 0.99373 0.92541 0.91917 1.21965 1.01138 0.99667 0.98136 1.21657 0.84262 1.06382 1.01823 1.24751 0.93544 0.73210 0.79468 1.90564 1.72301 1.44882 1.36052 1.86529 1.22733 1.74029 1.43486 1.22430 0.75069 0.99611 0.97284 1.18881 0.97133 0.90716 0.92887 1.20655 1.13085 1.14877 1.05679 0.92574 1.25750 0.94851 0.97115 1.00131 1.70113 1.20796 1.27161 1.36747 0.85620 0.78784 0.77440 0.80236 1.19811 1.21185 1.19085 1.23013 1.01956 0.94701 1.01722 1.22480 0.91018 1.04861 1.00270 0.92577 0.92494 0.92090 0.91029 0.93743 0.92354 0.92607 0.90262 0.91157 0.91568 0.94134 0.91672 0.85625 0.86510 0.94490 0.93687 0.93020 0.89490 0.89112 0.90549 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 71.98 0.66 -1.15 16 2 C -0.10 -1.52 2.78 -10.80 -0.03 -1.55 16 3 C -0.15 -2.63 8.95 71.98 0.64 -1.98 16 4 C -0.10 -1.68 4.15 30.60 0.13 -1.55 16 5 C -0.08 -1.77 1.90 -10.79 -0.02 -1.79 16 6 H 0.06 1.68 6.16 -2.39 -0.01 1.67 16 7 C -0.15 -3.52 8.70 71.98 0.63 -2.89 16 8 C -0.10 -2.64 5.29 29.85 0.16 -2.48 16 9 C 0.44 16.82 7.68 71.24 0.55 17.36 16 10 O -0.55 -23.42 13.72 21.97 0.30 -23.12 16 11 O -0.35 -15.58 10.16 -51.44 -0.52 -16.10 16 12 C 0.13 6.37 5.28 71.98 0.38 6.75 16 13 C 0.00 0.21 1.61 -52.93 -0.08 0.13 16 14 C -0.51 -27.90 8.77 25.60 0.22 -27.67 16 15 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 16 C 0.02 1.20 5.39 84.66 0.46 1.66 16 17 N -0.91 -52.63 12.93 21.45 0.28 -52.35 16 18 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 C -0.18 -7.51 9.96 30.62 0.30 -7.20 16 23 C -0.15 -6.95 9.43 30.62 0.29 -6.66 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 1.14 6.34 -2.38 -0.02 1.12 16 28 H 0.04 0.91 6.46 -2.38 -0.02 0.89 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.35 6.46 -2.39 -0.02 1.33 16 34 H 0.04 1.21 5.96 -2.39 -0.01 1.20 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.04 2.05 8.13 -2.39 -0.02 2.03 16 39 H 0.04 2.07 8.09 -2.38 -0.02 2.06 16 40 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 42 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.07 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -63.99 354.46 7.31 -56.68 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.94 Total: 18.47 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 4.28 Total: -29.04 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.28 Total: -52.35 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.22 Total: -39.23 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -63.99 7.31 -56.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174730922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.576 kcal (2) G-P(sol) polarization free energy of solvation -63.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds