Wall clock time and date at job start Mon Mar 30 2020 00:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 H 1.09009 * 109.46679 * 183.55135 * 3 2 1 5 5 C 1.53001 * 109.47133 * 303.54517 * 3 2 1 6 6 C 1.50690 * 109.47397 * 293.84734 * 5 3 2 7 7 O 1.20828 * 120.00138 * 353.91555 * 6 5 3 8 8 O 1.34234 * 120.00169 * 173.91825 * 6 5 3 9 9 C 1.45194 * 117.00179 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47329 * 180.02562 * 9 8 6 11 11 C 1.50710 * 115.54690 * 294.64763 * 10 9 8 12 12 H 1.08000 * 119.99809 * 95.29745 * 11 10 9 13 13 C 1.37878 * 119.99832 * 275.02266 * 11 10 9 14 14 N 1.31513 * 120.00125 * 355.56342 * 13 11 10 15 15 Si 1.86800 * 119.99842 * 175.55784 * 13 11 10 16 16 H 1.48501 * 109.46905 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47041 * 119.99920 * 15 13 11 18 18 H 1.48501 * 109.47126 * 240.00137 * 15 13 11 19 19 C 1.52994 * 117.50051 * 80.31432 * 10 9 8 20 20 C 1.52992 * 117.50240 * 148.97815 * 10 9 8 21 21 C 1.53000 * 109.47517 * 63.55279 * 3 2 1 22 22 C 1.53002 * 109.47176 * 59.99571 * 21 3 2 23 23 C 1.52995 * 109.47201 * 179.97438 * 21 3 2 24 24 H 1.08997 * 109.47018 * 185.66923 * 1 2 3 25 25 H 1.09006 * 109.47104 * 305.66791 * 1 2 3 26 26 H 1.09000 * 109.47130 * 65.66919 * 1 2 3 27 27 H 1.09000 * 109.46723 * 240.00119 * 2 1 3 28 28 H 1.08997 * 109.46992 * 119.99943 * 2 1 3 29 29 H 1.08999 * 109.47165 * 173.84366 * 5 3 2 30 30 H 1.09002 * 109.46759 * 53.84560 * 5 3 2 31 31 H 1.09002 * 109.47124 * 60.00238 * 9 8 6 32 32 H 1.08998 * 109.47323 * 299.99934 * 9 8 6 33 33 H 0.96998 * 120.00046 * 179.97438 * 14 13 11 34 34 H 1.09005 * 117.50041 * 215.00186 * 19 10 9 35 35 H 1.08997 * 117.50132 * 0.02643 * 19 10 9 36 36 H 1.09005 * 117.50009 * 359.97438 * 20 10 9 37 37 H 1.09004 * 117.49799 * 144.97323 * 20 10 9 38 38 H 1.09003 * 109.46649 * 299.99771 * 21 3 2 39 39 H 1.09001 * 109.47041 * 180.02562 * 22 21 3 40 40 H 1.09001 * 109.46862 * 300.00316 * 22 21 3 41 41 H 1.08996 * 109.46874 * 60.00254 * 22 21 3 42 42 H 1.09004 * 109.46959 * 59.99728 * 23 21 3 43 43 H 1.09000 * 109.47360 * 179.97438 * 23 21 3 44 44 H 1.08996 * 109.47206 * 299.99965 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1282 1.4431 -0.0637 5 6 1.4584 2.1890 -1.2023 6 6 2.0083 1.5979 -2.4746 7 8 2.8672 0.7495 -2.4248 8 8 1.5439 2.0137 -3.6634 9 6 2.1198 1.4010 -4.8471 10 6 1.4709 1.9980 -6.0975 11 6 0.0026 1.7056 -6.2705 12 1 -0.7337 2.4179 -5.9286 13 6 -0.4005 0.5314 -6.8703 14 7 0.4944 -0.2929 -7.3697 15 14 -2.2177 0.1112 -6.9734 16 1 -3.0129 1.1952 -6.3426 17 1 -2.6135 -0.0277 -8.3978 18 1 -2.4712 -1.1675 -6.2622 19 6 1.9818 3.3578 -6.5778 20 6 2.3268 2.0895 -7.3624 21 6 1.6043 2.1375 1.2915 22 6 2.1859 1.3910 2.4937 23 6 2.1148 3.5798 1.2917 24 1 -0.3633 -1.0226 0.1015 25 1 -0.3634 0.5992 0.8349 26 1 -0.3633 0.4234 -0.9364 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7322 3.2424 -1.1430 30 1 0.3724 2.0950 -1.1976 31 1 1.9415 0.3259 -4.8229 32 1 3.1928 1.5910 -4.8691 33 1 0.2108 -1.1191 -7.7913 34 1 1.2560 4.0409 -7.0190 35 1 2.7805 3.8269 -6.0033 36 1 3.3523 1.7248 -7.3037 37 1 1.8279 1.9378 -8.3196 38 1 0.5161 2.1369 1.3551 39 1 1.8751 1.8859 3.4138 40 1 1.8225 0.3633 2.4937 41 1 3.2740 1.3916 2.4300 42 1 1.7007 4.1119 0.4352 43 1 1.8040 4.0751 2.2116 44 1 3.2029 3.5801 1.2282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174735062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:45 Heat of formation + Delta-G solvation = -93.436552 kcal Electronic energy + Delta-G solvation = -21361.220859 eV Core-core repulsion = 18278.579898 eV Total energy + Delta-G solvation = -3082.640960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05401 -38.07284 -36.60669 -35.14171 -32.54332 -31.94574 -30.21189 -27.20056 -26.88871 -25.46524 -24.72751 -22.35137 -21.16870 -20.29401 -19.25313 -18.68833 -16.96689 -16.49194 -16.06935 -15.49760 -15.02430 -14.77678 -14.58935 -14.12556 -13.86382 -13.25604 -13.09072 -12.85507 -12.47616 -12.37792 -12.21307 -11.96246 -11.71035 -11.62745 -11.53578 -11.34803 -10.98521 -10.89302 -10.84448 -10.52524 -10.45533 -10.28715 -10.27936 -10.21732 -9.87087 -9.77085 -9.42415 -8.90885 -8.43734 -8.18121 -6.05935 -4.11766 2.83083 3.27314 3.35888 3.39797 3.41563 4.39279 4.67432 4.71645 4.79634 5.02524 5.21148 5.24452 5.30830 5.38579 5.44345 5.48250 5.51467 5.60901 5.66166 5.70301 5.75356 5.84390 5.96852 5.98313 5.99963 6.03831 6.15509 6.21348 6.25580 6.32893 6.36528 6.43490 6.53769 6.57143 6.69633 6.76146 7.06570 7.29323 7.38770 7.54105 7.86695 8.37961 8.50824 8.90200 9.54002 11.02869 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.004855 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.020719 B = 5765.673773 C = 6433.841926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.128 4.128 3 C -0.069 4.069 4 H 0.079 0.921 5 C -0.118 4.118 6 C 0.453 3.547 7 O -0.523 6.523 8 O -0.340 6.340 9 C 0.117 3.883 10 C 0.033 3.967 11 C -0.487 4.487 12 H 0.063 0.937 13 C 0.068 3.932 14 N -0.882 5.882 15 Si 0.891 3.109 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.206 4.206 20 C -0.140 4.140 21 C -0.094 4.094 22 C -0.148 4.148 23 C -0.153 4.153 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.260 0.740 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 4.382 15.734 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.165 4.165 3 C -0.088 4.088 4 H 0.098 0.902 5 C -0.156 4.156 6 C 0.296 3.704 7 O -0.414 6.414 8 O -0.255 6.255 9 C 0.043 3.957 10 C 0.033 3.967 11 C -0.525 4.525 12 H 0.081 0.919 13 C -0.135 4.135 14 N -0.518 5.518 15 Si 0.719 3.281 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.243 4.243 20 C -0.177 4.177 21 C -0.112 4.112 22 C -0.205 4.205 23 C -0.210 4.210 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.269 3.951 15.590 16.242 hybrid contribution -0.803 -0.495 -0.249 0.976 sum 1.466 3.456 15.341 15.793 Atomic orbital electron populations 1.21929 0.96243 1.01538 1.01918 1.21687 0.95756 0.96144 1.02961 1.21030 1.00981 0.94774 0.92008 0.90228 1.21603 1.03206 1.01384 0.89398 1.23607 0.80022 0.80238 0.86504 1.90580 1.31163 1.31304 1.88309 1.86531 1.61999 1.62272 1.14686 1.22848 0.93831 0.97833 0.81140 1.18800 0.95131 0.93778 0.88992 1.20423 0.89100 1.03987 1.38967 0.91892 1.25016 0.97518 0.96308 0.94663 1.70016 1.33018 1.11210 1.37597 0.86548 0.85420 0.78467 0.77704 1.19566 1.20998 1.20937 1.22996 1.02810 0.92245 1.06278 1.22520 0.98083 0.99520 0.97626 1.21180 1.00758 0.94879 0.94376 1.21878 1.00997 1.00468 0.97134 1.21950 1.01344 0.96048 1.01692 0.92985 0.92589 0.92346 0.90512 0.91819 0.87977 0.87768 0.91114 0.94329 0.93009 0.90131 0.91660 0.91828 0.89141 0.90687 0.92969 0.92237 0.92742 0.92186 0.92827 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.14 37.16 0.34 -1.56 16 2 C -0.13 -1.64 5.17 -26.73 -0.14 -1.78 16 3 C -0.07 -0.84 1.39 -90.62 -0.13 -0.97 16 4 H 0.08 1.06 7.82 -51.92 -0.41 0.65 16 5 C -0.12 -1.61 4.83 -27.89 -0.13 -1.75 16 6 C 0.45 8.54 7.60 36.00 0.27 8.81 16 7 O -0.52 -10.93 14.02 -18.75 -0.26 -11.19 16 8 O -0.34 -7.45 10.16 -39.27 -0.40 -7.85 16 9 C 0.12 2.80 5.29 37.16 0.20 2.99 16 10 C 0.03 0.84 1.69 -155.66 -0.26 0.58 16 11 C -0.49 -13.34 8.78 -34.43 -0.30 -13.64 16 12 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 13 C 0.07 1.86 5.43 -17.82 -0.10 1.76 16 14 N -0.88 -24.96 12.66 55.43 0.70 -24.25 16 15 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 C -0.21 -4.55 9.96 -26.70 -0.27 -4.81 16 20 C -0.14 -3.30 9.15 -26.70 -0.24 -3.55 16 21 C -0.09 -0.89 2.24 -90.62 -0.20 -1.09 16 22 C -0.15 -1.27 8.84 37.16 0.33 -0.94 16 23 C -0.15 -1.33 8.85 37.15 0.33 -1.01 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.56 6.26 -51.93 -0.33 0.24 16 26 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 27 H 0.08 1.23 6.35 -51.93 -0.33 0.90 16 28 H 0.06 0.72 6.24 -51.93 -0.32 0.40 16 29 H 0.10 1.20 6.12 -51.93 -0.32 0.88 16 30 H 0.10 1.34 6.15 -51.93 -0.32 1.02 16 31 H 0.07 1.86 8.13 -51.93 -0.42 1.44 16 32 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.09 2.26 8.14 -51.93 -0.42 1.84 16 38 H 0.07 0.69 6.40 -51.93 -0.33 0.36 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.51 6.35 -51.93 -0.33 0.18 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.52 6.30 -51.93 -0.33 0.19 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -29.39 346.26 -7.62 -37.01 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.55 Total: 1.91 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -0.31 Total: -16.95 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.70 Total: -24.25 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.66 Total: -19.05 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.39 -7.62 -37.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174735062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.427 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds