Wall clock time and date at job start Mon Mar 30 2020 00:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 H 1.09009 * 109.46679 * 183.55135 * 3 2 1 5 5 C 1.53001 * 109.47133 * 303.54517 * 3 2 1 6 6 C 1.50690 * 109.47397 * 293.84734 * 5 3 2 7 7 O 1.20828 * 120.00138 * 353.91555 * 6 5 3 8 8 O 1.34234 * 120.00169 * 173.91825 * 6 5 3 9 9 C 1.45194 * 117.00179 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47329 * 180.02562 * 9 8 6 11 11 C 1.50710 * 115.54690 * 294.64763 * 10 9 8 12 12 H 1.08000 * 119.99809 * 95.29745 * 11 10 9 13 13 C 1.37878 * 119.99832 * 275.02266 * 11 10 9 14 14 N 1.31513 * 120.00125 * 355.56342 * 13 11 10 15 15 Si 1.86800 * 119.99842 * 175.55784 * 13 11 10 16 16 H 1.48501 * 109.46905 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47041 * 119.99920 * 15 13 11 18 18 H 1.48501 * 109.47126 * 240.00137 * 15 13 11 19 19 C 1.52994 * 117.50051 * 80.31432 * 10 9 8 20 20 C 1.52992 * 117.50240 * 148.97815 * 10 9 8 21 21 C 1.53000 * 109.47517 * 63.55279 * 3 2 1 22 22 C 1.53002 * 109.47176 * 59.99571 * 21 3 2 23 23 C 1.52995 * 109.47201 * 179.97438 * 21 3 2 24 24 H 1.08997 * 109.47018 * 185.66923 * 1 2 3 25 25 H 1.09006 * 109.47104 * 305.66791 * 1 2 3 26 26 H 1.09000 * 109.47130 * 65.66919 * 1 2 3 27 27 H 1.09000 * 109.46723 * 240.00119 * 2 1 3 28 28 H 1.08997 * 109.46992 * 119.99943 * 2 1 3 29 29 H 1.08999 * 109.47165 * 173.84366 * 5 3 2 30 30 H 1.09002 * 109.46759 * 53.84560 * 5 3 2 31 31 H 1.09002 * 109.47124 * 60.00238 * 9 8 6 32 32 H 1.08998 * 109.47323 * 299.99934 * 9 8 6 33 33 H 0.96998 * 120.00046 * 179.97438 * 14 13 11 34 34 H 1.09005 * 117.50041 * 215.00186 * 19 10 9 35 35 H 1.08997 * 117.50132 * 0.02643 * 19 10 9 36 36 H 1.09005 * 117.50009 * 359.97438 * 20 10 9 37 37 H 1.09004 * 117.49799 * 144.97323 * 20 10 9 38 38 H 1.09003 * 109.46649 * 299.99771 * 21 3 2 39 39 H 1.09001 * 109.47041 * 180.02562 * 22 21 3 40 40 H 1.09001 * 109.46862 * 300.00316 * 22 21 3 41 41 H 1.08996 * 109.46874 * 60.00254 * 22 21 3 42 42 H 1.09004 * 109.46959 * 59.99728 * 23 21 3 43 43 H 1.09000 * 109.47360 * 179.97438 * 23 21 3 44 44 H 1.08996 * 109.47206 * 299.99965 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1282 1.4431 -0.0637 5 6 1.4584 2.1890 -1.2023 6 6 2.0083 1.5979 -2.4746 7 8 2.8672 0.7495 -2.4248 8 8 1.5439 2.0137 -3.6634 9 6 2.1198 1.4010 -4.8471 10 6 1.4709 1.9980 -6.0975 11 6 0.0026 1.7056 -6.2705 12 1 -0.7337 2.4179 -5.9286 13 6 -0.4005 0.5314 -6.8703 14 7 0.4944 -0.2929 -7.3697 15 14 -2.2177 0.1112 -6.9734 16 1 -3.0129 1.1952 -6.3426 17 1 -2.6135 -0.0277 -8.3978 18 1 -2.4712 -1.1675 -6.2622 19 6 1.9818 3.3578 -6.5778 20 6 2.3268 2.0895 -7.3624 21 6 1.6043 2.1375 1.2915 22 6 2.1859 1.3910 2.4937 23 6 2.1148 3.5798 1.2917 24 1 -0.3633 -1.0226 0.1015 25 1 -0.3634 0.5992 0.8349 26 1 -0.3633 0.4234 -0.9364 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7322 3.2424 -1.1430 30 1 0.3724 2.0950 -1.1976 31 1 1.9415 0.3259 -4.8229 32 1 3.1928 1.5910 -4.8691 33 1 0.2108 -1.1191 -7.7913 34 1 1.2560 4.0409 -7.0190 35 1 2.7805 3.8269 -6.0033 36 1 3.3523 1.7248 -7.3037 37 1 1.8279 1.9378 -8.3196 38 1 0.5161 2.1369 1.3551 39 1 1.8751 1.8859 3.4138 40 1 1.8225 0.3633 2.4937 41 1 3.2740 1.3916 2.4300 42 1 1.7007 4.1119 0.4352 43 1 1.8040 4.0751 2.2116 44 1 3.2029 3.5801 1.2282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174735062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:44 Heat of formation + Delta-G solvation = -107.107580 kcal Electronic energy + Delta-G solvation = -21361.813679 eV Core-core repulsion = 18278.579898 eV Total energy + Delta-G solvation = -3083.233780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55322 -39.28976 -38.29214 -36.84152 -34.02676 -33.41857 -31.35331 -28.73105 -27.81167 -27.36530 -26.00414 -23.33150 -22.96748 -21.69151 -21.20170 -19.68193 -18.54492 -18.28717 -17.55710 -17.02722 -16.63850 -16.18560 -15.84841 -15.57147 -15.05489 -14.81200 -14.26082 -14.07919 -13.81927 -13.62949 -13.42886 -13.24979 -13.04700 -12.91688 -12.85289 -12.74582 -12.46886 -12.35702 -12.22176 -12.08150 -11.72180 -11.66467 -11.64236 -11.46611 -11.24723 -11.15668 -10.95406 -10.89727 -10.45845 -10.08280 -8.14570 -6.26314 1.31091 1.38871 1.41533 1.52822 1.89034 2.41010 3.14148 3.42257 3.68469 3.78882 3.86217 4.08206 4.13207 4.21995 4.36769 4.39862 4.44165 4.49916 4.54966 4.57214 4.64102 4.65833 4.81125 4.86158 4.88237 4.96262 4.99858 5.05607 5.11512 5.15770 5.18177 5.22518 5.31575 5.37699 5.40560 5.46362 5.58098 5.60207 5.65904 5.73187 5.79518 6.34783 6.79202 6.89978 7.42359 8.93969 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.004855 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.020719 B = 5765.673773 C = 6433.841926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.128 4.128 3 C -0.064 4.064 4 H 0.065 0.935 5 C -0.111 4.111 6 C 0.446 3.554 7 O -0.547 6.547 8 O -0.351 6.351 9 C 0.130 3.870 10 C 0.000 4.000 11 C -0.502 4.502 12 H 0.055 0.945 13 C 0.022 3.978 14 N -0.910 5.910 15 Si 0.951 3.049 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.283 1.283 19 C -0.178 4.178 20 C -0.142 4.142 21 C -0.087 4.087 22 C -0.147 4.147 23 C -0.154 4.154 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.260 0.740 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 5.770 17.596 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.165 4.165 3 C -0.083 4.083 4 H 0.083 0.917 5 C -0.148 4.148 6 C 0.292 3.708 7 O -0.439 6.439 8 O -0.267 6.267 9 C 0.056 3.944 10 C 0.000 4.000 11 C -0.539 4.539 12 H 0.073 0.927 13 C -0.178 4.178 14 N -0.548 5.548 15 Si 0.777 3.223 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.209 1.209 19 C -0.215 4.215 20 C -0.180 4.180 21 C -0.105 4.105 22 C -0.204 4.204 23 C -0.211 4.211 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.145 0.855 30 H 0.134 0.866 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.463 5.353 17.463 18.324 hybrid contribution -0.506 -0.933 -0.782 1.318 sum 0.957 4.420 16.682 17.284 Atomic orbital electron populations 1.21915 0.95343 1.02096 1.01993 1.21659 0.96529 0.96576 1.01781 1.21026 1.00009 0.94421 0.92845 0.91661 1.21809 1.03669 1.02547 0.86737 1.24708 0.79487 0.79772 0.86841 1.90571 1.32412 1.32441 1.88451 1.86539 1.62512 1.62429 1.15199 1.22436 0.94206 0.95671 0.82079 1.18911 0.94568 0.96597 0.89939 1.20658 0.90362 1.04076 1.38835 0.92655 1.25729 1.01444 0.96223 0.94434 1.70118 1.34777 1.11524 1.38357 0.85608 0.80766 0.78139 0.77836 1.18800 1.20388 1.20926 1.23004 1.02803 0.91057 1.04591 1.22433 0.98210 1.01040 0.96302 1.21146 1.01343 0.95169 0.92836 1.21878 1.00772 1.00472 0.97318 1.21964 1.01169 0.95434 1.02551 0.92824 0.90021 0.94100 0.94454 0.90239 0.85453 0.86562 0.94757 0.93476 0.93055 0.89638 0.89125 0.90673 0.91118 0.89699 0.91418 0.92335 0.93109 0.92094 0.91325 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.14 71.98 0.66 -2.87 16 2 C -0.13 -3.21 5.17 30.59 0.16 -3.06 16 3 C -0.06 -1.47 1.39 -10.79 -0.02 -1.49 16 4 H 0.06 1.69 7.82 -2.38 -0.02 1.67 16 5 C -0.11 -2.86 4.83 29.85 0.14 -2.72 16 6 C 0.45 16.91 7.60 71.23 0.54 17.46 16 7 O -0.55 -23.49 14.02 21.96 0.31 -23.18 16 8 O -0.35 -15.49 10.16 -51.45 -0.52 -16.02 16 9 C 0.13 6.35 5.29 71.98 0.38 6.73 16 10 C 0.00 0.01 1.69 -52.93 -0.09 -0.07 16 11 C -0.50 -27.74 8.78 25.60 0.22 -27.52 16 12 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 13 C 0.02 1.21 5.43 84.66 0.46 1.67 16 14 N -0.91 -52.56 12.66 21.45 0.27 -52.28 16 15 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 C -0.18 -7.60 9.96 30.62 0.30 -7.30 16 20 C -0.14 -6.72 9.15 30.62 0.28 -6.44 16 21 C -0.09 -1.40 2.24 -10.79 -0.02 -1.42 16 22 C -0.15 -2.13 8.84 71.98 0.64 -1.49 16 23 C -0.15 -2.22 8.85 71.98 0.64 -1.58 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.08 1.41 6.26 -2.38 -0.01 1.39 16 26 H 0.04 1.05 6.56 -2.39 -0.02 1.04 16 27 H 0.04 1.23 6.35 -2.39 -0.02 1.21 16 28 H 0.08 1.71 6.24 -2.39 -0.01 1.70 16 29 H 0.13 2.68 6.12 -2.39 -0.01 2.67 16 30 H 0.12 2.79 6.15 -2.39 -0.01 2.77 16 31 H 0.03 1.88 8.13 -2.39 -0.02 1.86 16 32 H 0.05 2.16 8.08 -2.39 -0.02 2.14 16 33 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.09 3.56 8.14 -2.38 -0.02 3.54 16 35 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.07 3.31 8.14 -2.38 -0.02 3.29 16 37 H 0.07 3.59 8.14 -2.39 -0.02 3.57 16 38 H 0.08 1.24 6.40 -2.39 -0.02 1.22 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.86 6.35 -2.39 -0.02 0.84 16 41 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 0.86 6.30 -2.38 -0.02 0.85 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -64.15 346.26 7.34 -56.81 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.96 Total: 19.11 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 4.30 Total: -30.10 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.27 Total: -52.28 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.21 Total: -39.19 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -64.15 7.34 -56.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174735062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.294 kcal (2) G-P(sol) polarization free energy of solvation -64.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds