Wall clock time and date at job start Mon Mar 30 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47544 * 2 1 4 4 H 1.09002 * 109.46696 * 303.10233 * 3 2 1 5 5 C 1.52996 * 109.47241 * 183.09781 * 3 2 1 6 6 C 1.50697 * 109.47001 * 65.00288 * 5 3 2 7 7 O 1.20831 * 120.00055 * 359.97438 * 6 5 3 8 8 O 1.34233 * 120.00198 * 180.02562 * 6 5 3 9 9 C 1.45196 * 117.00278 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47065 * 179.97438 * 9 8 6 11 11 C 1.50701 * 115.55496 * 294.17929 * 10 9 8 12 12 H 1.08001 * 119.99873 * 95.26300 * 11 10 9 13 13 C 1.37873 * 120.00275 * 274.99047 * 11 10 9 14 14 N 1.31517 * 120.00105 * 355.65334 * 13 11 10 15 15 Si 1.86796 * 120.00113 * 175.65347 * 13 11 10 16 16 H 1.48503 * 109.47140 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47212 * 120.00164 * 15 13 11 18 18 H 1.48501 * 109.47056 * 239.99860 * 15 13 11 19 19 C 1.53002 * 117.49956 * 79.85535 * 10 9 8 20 20 C 1.53005 * 117.49817 * 148.51343 * 10 9 8 21 21 C 1.52998 * 109.46918 * 63.09800 * 3 2 1 22 22 C 1.52995 * 109.47569 * 65.78167 * 21 3 2 23 23 C 1.53001 * 109.47133 * 185.78072 * 21 3 2 24 24 H 1.09001 * 109.46599 * 62.97423 * 1 2 3 25 25 H 1.08997 * 109.47037 * 182.97369 * 1 2 3 26 26 H 1.09001 * 109.47123 * 302.97891 * 1 2 3 27 27 H 1.09003 * 109.47403 * 239.99585 * 2 1 3 28 28 H 1.09001 * 109.46755 * 120.00105 * 2 1 3 29 29 H 1.08991 * 109.47325 * 304.99874 * 5 3 2 30 30 H 1.09012 * 109.46859 * 184.99708 * 5 3 2 31 31 H 1.09009 * 109.47183 * 59.99935 * 9 8 6 32 32 H 1.08995 * 109.47190 * 299.99974 * 9 8 6 33 33 H 0.96996 * 120.00393 * 179.97438 * 14 13 11 34 34 H 1.09000 * 117.49719 * 215.00564 * 19 10 9 35 35 H 1.09001 * 117.49313 * 0.02562 * 19 10 9 36 36 H 1.09004 * 117.49612 * 359.97248 * 20 10 9 37 37 H 1.08995 * 117.50296 * 144.97550 * 20 10 9 38 38 H 1.09000 * 109.47563 * 305.77805 * 21 3 2 39 39 H 1.09000 * 109.46973 * 59.99277 * 22 21 3 40 40 H 1.09000 * 109.47697 * 179.97438 * 22 21 3 41 41 H 1.09000 * 109.46769 * 300.00120 * 22 21 3 42 42 H 1.09001 * 109.47129 * 302.51404 * 23 21 3 43 43 H 1.09007 * 109.47463 * 62.51194 * 23 21 3 44 44 H 1.08998 * 109.47702 * 182.51373 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6321 1.9720 -0.8609 5 6 3.5681 1.4430 -0.0780 6 6 4.0038 0.8662 -1.4002 7 8 3.1771 0.4924 -2.1981 8 8 5.3105 0.7666 -1.6911 9 6 5.6570 0.2007 -2.9826 10 6 7.1792 0.1689 -3.1335 11 6 7.8546 1.5146 -3.1953 12 1 8.2647 1.9547 -2.2983 13 6 7.9540 2.1816 -4.3979 14 7 7.5366 1.6071 -5.5049 15 14 8.6815 3.9011 -4.4550 16 1 9.0720 4.3191 -3.0845 17 1 9.8786 3.9032 -5.3337 18 1 7.6717 4.8482 -4.9920 19 6 7.9339 -0.9693 -2.4437 20 6 7.7829 -0.9634 -3.9669 21 6 1.5948 2.1408 1.2864 22 6 2.2822 1.4863 2.4864 23 6 1.9794 3.6203 1.2229 24 1 -0.3632 0.4670 -0.9155 25 1 -0.3633 -1.0263 0.0533 26 1 -0.3633 0.5594 0.8621 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9736 0.8388 0.7334 30 1 3.9361 2.4653 0.0114 31 1 5.2264 0.8130 -3.7750 32 1 5.2633 -0.8133 -3.0524 33 1 7.6062 2.0764 -6.3509 34 1 8.9188 -0.7446 -2.0344 35 1 7.3458 -1.6956 -1.8827 36 1 7.0956 -1.6858 -4.4073 37 1 8.6683 -0.7348 -4.5601 38 1 0.5138 2.0507 1.3933 39 1 3.3632 1.5764 2.3794 40 1 1.9653 1.9841 3.4028 41 1 2.0082 0.4323 2.5316 42 1 3.0551 3.7099 1.0713 43 1 1.4548 4.0969 0.3947 44 1 1.7023 4.1083 2.1573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174735073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:47 Heat of formation + Delta-G solvation = -94.072488 kcal Electronic energy + Delta-G solvation = -21274.539549 eV Core-core repulsion = 18191.871013 eV Total energy + Delta-G solvation = -3082.668536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05793 -38.08922 -36.61082 -35.15231 -32.36459 -31.94797 -30.39817 -27.30230 -26.94487 -25.40577 -24.56350 -22.31150 -21.19906 -20.52919 -19.25423 -18.52846 -17.16652 -16.53175 -15.87866 -15.54405 -15.06418 -14.65664 -14.28744 -14.11060 -13.68900 -13.59385 -13.33211 -12.93709 -12.82086 -12.22084 -12.04131 -11.98303 -11.75347 -11.58626 -11.40879 -11.32232 -11.03076 -10.98225 -10.85868 -10.52989 -10.45557 -10.33496 -10.27036 -10.24935 -9.85839 -9.74686 -9.41099 -8.90850 -8.43949 -8.18355 -6.06140 -4.12070 2.82070 3.27260 3.35834 3.39791 3.41661 4.39157 4.62672 4.71790 4.81129 5.11905 5.19216 5.22011 5.24634 5.30980 5.45338 5.47308 5.54555 5.57141 5.64836 5.75051 5.78789 5.82437 5.96142 5.97547 5.99888 6.01462 6.14139 6.18181 6.25363 6.32470 6.34962 6.43585 6.50384 6.54200 6.69760 6.76137 7.06456 7.29530 7.38716 7.53990 7.86507 8.37733 8.50154 8.89989 9.53771 11.02688 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.004691 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.179919 B = 5967.079503 C = 6578.904740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.070 4.070 4 H 0.079 0.921 5 C -0.115 4.115 6 C 0.451 3.549 7 O -0.522 6.522 8 O -0.340 6.340 9 C 0.117 3.883 10 C 0.033 3.967 11 C -0.487 4.487 12 H 0.063 0.937 13 C 0.068 3.932 14 N -0.882 5.882 15 Si 0.892 3.108 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.206 4.206 20 C -0.140 4.140 21 C -0.093 4.093 22 C -0.154 4.154 23 C -0.153 4.153 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.260 0.740 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.810 -0.490 12.878 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.088 4.088 4 H 0.098 0.902 5 C -0.153 4.153 6 C 0.295 3.705 7 O -0.412 6.412 8 O -0.255 6.255 9 C 0.044 3.956 10 C 0.032 3.968 11 C -0.525 4.525 12 H 0.081 0.919 13 C -0.135 4.135 14 N -0.519 5.519 15 Si 0.719 3.281 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.243 4.243 20 C -0.177 4.177 21 C -0.111 4.111 22 C -0.211 4.211 23 C -0.211 4.211 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.021 -0.580 12.405 16.604 hybrid contribution 0.322 0.877 -0.390 1.013 sum -10.699 0.297 12.016 16.091 Atomic orbital electron populations 1.21780 0.96163 1.01134 1.01533 1.21757 0.95848 0.96232 1.02871 1.21029 0.92647 0.97091 0.98067 0.90236 1.21560 0.97098 1.03353 0.93244 1.23653 0.81748 0.75915 0.89197 1.90574 1.53740 1.46564 1.50353 1.86531 1.24863 1.74168 1.39952 1.22849 0.97269 0.95132 0.80383 1.18807 0.87675 0.90892 0.99390 1.20423 1.36859 1.01064 0.94151 0.91885 1.25019 0.95086 0.97855 0.95571 1.70016 1.46658 1.37005 0.98186 0.86541 0.78771 0.84565 0.78212 1.19563 1.20987 1.20948 1.22994 1.01961 1.03806 0.95541 1.22519 1.02780 1.00816 0.91612 1.21191 1.00501 0.94914 0.94501 1.21980 1.01134 1.00720 0.97296 1.21942 1.02044 0.95581 1.01497 0.92796 0.93190 0.92873 0.90074 0.92331 0.88020 0.87820 0.91111 0.94300 0.92998 0.90131 0.91652 0.91824 0.89147 0.90615 0.92128 0.92976 0.92374 0.92169 0.92654 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.71 37.16 0.36 -1.19 16 2 C -0.13 -1.57 5.03 -26.73 -0.13 -1.71 16 3 C -0.07 -0.84 1.29 -90.62 -0.12 -0.96 16 4 H 0.08 1.08 7.96 -51.93 -0.41 0.67 16 5 C -0.12 -1.56 4.47 -27.89 -0.12 -1.68 16 6 C 0.45 8.47 7.65 36.00 0.28 8.75 16 7 O -0.52 -10.82 13.73 -18.75 -0.26 -11.08 16 8 O -0.34 -7.44 10.17 -39.26 -0.40 -7.84 16 9 C 0.12 2.79 5.29 37.15 0.20 2.99 16 10 C 0.03 0.82 1.69 -155.66 -0.26 0.56 16 11 C -0.49 -13.36 8.78 -34.44 -0.30 -13.66 16 12 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 13 C 0.07 1.85 5.43 -17.82 -0.10 1.76 16 14 N -0.88 -24.99 12.66 55.43 0.70 -24.29 16 15 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.21 -4.54 9.96 -26.69 -0.27 -4.80 16 20 C -0.14 -3.29 9.15 -26.69 -0.24 -3.54 16 21 C -0.09 -0.88 2.54 -90.62 -0.23 -1.11 16 22 C -0.15 -1.33 8.46 37.16 0.31 -1.02 16 23 C -0.15 -1.42 9.02 37.16 0.34 -1.08 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.48 6.25 -51.93 -0.32 0.15 16 27 H 0.08 1.22 5.91 -51.93 -0.31 0.92 16 28 H 0.06 0.64 6.45 -51.93 -0.34 0.31 16 29 H 0.10 1.21 6.64 -51.93 -0.35 0.86 16 30 H 0.10 1.31 6.33 -51.92 -0.33 0.98 16 31 H 0.07 1.86 8.14 -51.92 -0.42 1.44 16 32 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.09 2.26 8.14 -51.93 -0.42 1.83 16 38 H 0.08 0.68 6.18 -51.93 -0.32 0.36 16 39 H 0.06 0.53 6.45 -51.93 -0.33 0.20 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.49 6.53 -51.93 -0.34 0.15 16 42 H 0.06 0.58 6.38 -51.93 -0.33 0.24 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -29.36 346.58 -7.62 -36.98 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.57 Total: 1.59 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.30 Total: -16.69 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.70 Total: -24.29 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.66 Total: -18.92 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.36 -7.62 -36.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174735073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.094 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds