Wall clock time and date at job start Mon Mar 30 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47544 * 2 1 4 4 H 1.09002 * 109.46696 * 303.10233 * 3 2 1 5 5 C 1.52996 * 109.47241 * 183.09781 * 3 2 1 6 6 C 1.50697 * 109.47001 * 65.00288 * 5 3 2 7 7 O 1.20831 * 120.00055 * 359.97438 * 6 5 3 8 8 O 1.34233 * 120.00198 * 180.02562 * 6 5 3 9 9 C 1.45196 * 117.00278 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47065 * 179.97438 * 9 8 6 11 11 C 1.50701 * 115.55496 * 294.17929 * 10 9 8 12 12 H 1.08001 * 119.99873 * 95.26300 * 11 10 9 13 13 C 1.37873 * 120.00275 * 274.99047 * 11 10 9 14 14 N 1.31517 * 120.00105 * 355.65334 * 13 11 10 15 15 Si 1.86796 * 120.00113 * 175.65347 * 13 11 10 16 16 H 1.48503 * 109.47140 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47212 * 120.00164 * 15 13 11 18 18 H 1.48501 * 109.47056 * 239.99860 * 15 13 11 19 19 C 1.53002 * 117.49956 * 79.85535 * 10 9 8 20 20 C 1.53005 * 117.49817 * 148.51343 * 10 9 8 21 21 C 1.52998 * 109.46918 * 63.09800 * 3 2 1 22 22 C 1.52995 * 109.47569 * 65.78167 * 21 3 2 23 23 C 1.53001 * 109.47133 * 185.78072 * 21 3 2 24 24 H 1.09001 * 109.46599 * 62.97423 * 1 2 3 25 25 H 1.08997 * 109.47037 * 182.97369 * 1 2 3 26 26 H 1.09001 * 109.47123 * 302.97891 * 1 2 3 27 27 H 1.09003 * 109.47403 * 239.99585 * 2 1 3 28 28 H 1.09001 * 109.46755 * 120.00105 * 2 1 3 29 29 H 1.08991 * 109.47325 * 304.99874 * 5 3 2 30 30 H 1.09012 * 109.46859 * 184.99708 * 5 3 2 31 31 H 1.09009 * 109.47183 * 59.99935 * 9 8 6 32 32 H 1.08995 * 109.47190 * 299.99974 * 9 8 6 33 33 H 0.96996 * 120.00393 * 179.97438 * 14 13 11 34 34 H 1.09000 * 117.49719 * 215.00564 * 19 10 9 35 35 H 1.09001 * 117.49313 * 0.02562 * 19 10 9 36 36 H 1.09004 * 117.49612 * 359.97248 * 20 10 9 37 37 H 1.08995 * 117.50296 * 144.97550 * 20 10 9 38 38 H 1.09000 * 109.47563 * 305.77805 * 21 3 2 39 39 H 1.09000 * 109.46973 * 59.99277 * 22 21 3 40 40 H 1.09000 * 109.47697 * 179.97438 * 22 21 3 41 41 H 1.09000 * 109.46769 * 300.00120 * 22 21 3 42 42 H 1.09001 * 109.47129 * 302.51404 * 23 21 3 43 43 H 1.09007 * 109.47463 * 62.51194 * 23 21 3 44 44 H 1.08998 * 109.47702 * 182.51373 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6321 1.9720 -0.8609 5 6 3.5681 1.4430 -0.0780 6 6 4.0038 0.8662 -1.4002 7 8 3.1771 0.4924 -2.1981 8 8 5.3105 0.7666 -1.6911 9 6 5.6570 0.2007 -2.9826 10 6 7.1792 0.1689 -3.1335 11 6 7.8546 1.5146 -3.1953 12 1 8.2647 1.9547 -2.2983 13 6 7.9540 2.1816 -4.3979 14 7 7.5366 1.6071 -5.5049 15 14 8.6815 3.9011 -4.4550 16 1 9.0720 4.3191 -3.0845 17 1 9.8786 3.9032 -5.3337 18 1 7.6717 4.8482 -4.9920 19 6 7.9339 -0.9693 -2.4437 20 6 7.7829 -0.9634 -3.9669 21 6 1.5948 2.1408 1.2864 22 6 2.2822 1.4863 2.4864 23 6 1.9794 3.6203 1.2229 24 1 -0.3632 0.4670 -0.9155 25 1 -0.3633 -1.0263 0.0533 26 1 -0.3633 0.5594 0.8621 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9736 0.8388 0.7334 30 1 3.9361 2.4653 0.0114 31 1 5.2264 0.8130 -3.7750 32 1 5.2633 -0.8133 -3.0524 33 1 7.6062 2.0764 -6.3509 34 1 8.9188 -0.7446 -2.0344 35 1 7.3458 -1.6956 -1.8827 36 1 7.0956 -1.6858 -4.4073 37 1 8.6683 -0.7348 -4.5601 38 1 0.5138 2.0507 1.3933 39 1 3.3632 1.5764 2.3794 40 1 1.9653 1.9841 3.4028 41 1 2.0082 0.4323 2.5316 42 1 3.0551 3.7099 1.0713 43 1 1.4548 4.0969 0.3947 44 1 1.7023 4.1083 2.1573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174735073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:47 Heat of formation + Delta-G solvation = -107.659341 kcal Electronic energy + Delta-G solvation = -21275.128719 eV Core-core repulsion = 18191.871013 eV Total energy + Delta-G solvation = -3083.257707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54772 -39.28967 -38.29184 -36.84452 -34.02757 -33.20375 -31.53669 -28.69897 -27.98102 -27.35334 -25.75808 -23.17350 -23.00256 -21.99163 -21.20270 -19.49966 -18.63181 -18.36687 -17.43763 -17.20231 -16.59832 -15.93087 -15.81081 -15.35392 -14.97998 -14.75200 -14.46028 -14.30277 -13.74657 -13.64076 -13.59699 -13.48330 -12.93161 -12.88576 -12.85063 -12.55339 -12.39682 -12.33398 -12.12184 -12.08709 -11.92755 -11.67638 -11.63780 -11.36229 -11.25568 -11.15735 -10.92113 -10.86832 -10.45779 -10.08352 -8.14694 -6.26577 1.30835 1.39045 1.41730 1.53075 1.89205 2.41050 3.14003 3.42401 3.65509 3.81186 3.88036 4.10088 4.13310 4.31833 4.34028 4.36817 4.41734 4.46005 4.57107 4.59193 4.64980 4.73398 4.83112 4.87431 4.90829 4.93437 4.96435 5.06753 5.13610 5.18244 5.19901 5.20767 5.37326 5.37510 5.44764 5.48238 5.57441 5.59458 5.64407 5.73344 5.82516 6.34696 6.79096 6.90109 7.42191 8.93891 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.004691 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.179919 B = 5967.079503 C = 6578.904740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C -0.066 4.066 4 H 0.058 0.942 5 C -0.107 4.107 6 C 0.445 3.555 7 O -0.545 6.545 8 O -0.351 6.351 9 C 0.131 3.869 10 C -0.001 4.001 11 C -0.502 4.502 12 H 0.055 0.945 13 C 0.021 3.979 14 N -0.910 5.910 15 Si 0.952 3.048 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.283 1.283 19 C -0.177 4.177 20 C -0.142 4.142 21 C -0.085 4.085 22 C -0.154 4.154 23 C -0.155 4.155 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.261 0.739 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 -0.106 15.224 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C -0.085 4.085 4 H 0.076 0.924 5 C -0.144 4.144 6 C 0.290 3.710 7 O -0.436 6.436 8 O -0.267 6.267 9 C 0.057 3.943 10 C -0.001 4.001 11 C -0.540 4.540 12 H 0.074 0.926 13 C -0.179 4.179 14 N -0.548 5.548 15 Si 0.777 3.223 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.209 1.209 19 C -0.214 4.214 20 C -0.179 4.179 21 C -0.103 4.103 22 C -0.211 4.211 23 C -0.212 4.212 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.416 -0.198 14.768 18.667 hybrid contribution 0.394 0.734 -1.098 1.378 sum -11.022 0.536 13.670 17.568 Atomic orbital electron populations 1.21757 0.94846 1.01847 1.01833 1.21721 0.97070 0.96004 1.01871 1.21026 0.91313 0.97210 0.98920 0.92350 1.21758 0.98256 1.03885 0.90464 1.24748 0.80394 0.75173 0.90663 1.90569 1.53934 1.47553 1.51592 1.86539 1.26929 1.74552 1.38707 1.22429 0.96529 0.94815 0.80558 1.18926 0.88370 0.90948 1.01900 1.20661 1.36967 1.02388 0.93946 0.92645 1.25737 0.95571 1.01308 0.95266 1.70119 1.47765 1.38375 0.98565 0.85595 0.78044 0.80169 0.78449 1.18802 1.20381 1.20929 1.23002 1.01847 1.02117 0.94457 1.22431 1.02158 1.00664 0.92691 1.21143 1.01160 0.94757 0.93228 1.21989 1.00921 1.00973 0.97258 1.21963 1.01667 0.95475 1.02132 0.93960 0.92511 0.90887 0.93547 0.90748 0.85668 0.86575 0.94740 0.93453 0.93038 0.89648 0.89119 0.90663 0.91135 0.89595 0.92270 0.91581 0.92053 0.92636 0.93239 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.71 71.98 0.70 -2.13 16 2 C -0.13 -2.99 5.03 30.59 0.15 -2.84 16 3 C -0.07 -1.51 1.29 -10.80 -0.01 -1.52 16 4 H 0.06 1.58 7.96 -2.39 -0.02 1.56 16 5 C -0.11 -2.75 4.47 29.85 0.13 -2.61 16 6 C 0.44 16.75 7.65 71.23 0.55 17.30 16 7 O -0.55 -23.21 13.73 21.95 0.30 -22.90 16 8 O -0.35 -15.45 10.17 -51.44 -0.52 -15.98 16 9 C 0.13 6.36 5.29 71.98 0.38 6.74 16 10 C 0.00 -0.05 1.69 -52.93 -0.09 -0.14 16 11 C -0.50 -27.75 8.78 25.60 0.22 -27.53 16 12 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 13 C 0.02 1.17 5.43 84.65 0.46 1.63 16 14 N -0.91 -52.58 12.66 21.45 0.27 -52.31 16 15 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 C -0.18 -7.58 9.96 30.62 0.30 -7.27 16 20 C -0.14 -6.69 9.15 30.62 0.28 -6.41 16 21 C -0.08 -1.39 2.54 -10.80 -0.03 -1.41 16 22 C -0.15 -2.15 8.46 71.98 0.61 -1.54 16 23 C -0.16 -2.51 9.02 71.98 0.65 -1.86 16 24 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.12 6.25 -2.39 -0.01 1.11 16 27 H 0.05 1.41 5.91 -2.39 -0.01 1.39 16 28 H 0.07 1.47 6.45 -2.39 -0.02 1.45 16 29 H 0.13 2.67 6.64 -2.39 -0.02 2.66 16 30 H 0.12 2.75 6.33 -2.38 -0.02 2.73 16 31 H 0.03 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.05 2.17 8.08 -2.39 -0.02 2.15 16 33 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 35 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.07 3.31 8.14 -2.38 -0.02 3.29 16 37 H 0.07 3.58 8.14 -2.39 -0.02 3.56 16 38 H 0.09 1.27 6.18 -2.39 -0.01 1.26 16 39 H 0.06 0.85 6.45 -2.39 -0.02 0.83 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 0.83 6.53 -2.39 -0.02 0.81 16 42 H 0.05 0.94 6.38 -2.39 -0.02 0.93 16 43 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -63.86 346.58 7.34 -56.51 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.96 Total: 18.65 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 4.31 Total: -29.61 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.27 Total: -52.31 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.22 Total: -38.88 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -63.86 7.34 -56.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174735073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.146 kcal (2) G-P(sol) polarization free energy of solvation -63.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds