Wall clock time and date at job start Mon Mar 30 2020 00:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47389 * 2 1 4 4 C 1.52995 * 109.47389 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47389 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.47170 * 305.00274 * 5 4 3 7 7 C 1.53005 * 109.47060 * 64.99867 * 5 4 3 8 8 C 1.52994 * 109.46925 * 185.46004 * 7 5 4 9 9 C 1.50703 * 109.47284 * 185.00015 * 5 4 3 10 10 O 1.20825 * 119.99742 * 348.63818 * 9 5 4 11 11 O 1.34232 * 119.99830 * 168.63419 * 9 5 4 12 12 C 1.45196 * 116.99810 * 185.19882 * 11 9 5 13 13 C 1.52996 * 109.47010 * 175.25878 * 12 11 9 14 14 C 1.50700 * 115.55326 * 305.74645 * 13 12 11 15 15 H 1.07993 * 120.00011 * 143.83290 * 14 13 12 16 16 C 1.37871 * 119.99734 * 323.84000 * 14 13 12 17 17 N 1.31513 * 120.00487 * 2.96737 * 16 14 13 18 18 Si 1.86807 * 119.99942 * 182.97395 * 16 14 13 19 19 H 1.48496 * 109.47060 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47197 * 119.99880 * 18 16 14 21 21 H 1.48498 * 109.46984 * 239.99462 * 18 16 14 22 22 C 1.53009 * 117.49735 * 160.07695 * 13 12 11 23 23 C 1.53007 * 117.49873 * 91.41817 * 13 12 11 24 24 H 1.08999 * 109.47276 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47392 * 299.99957 * 1 2 3 26 26 H 1.09008 * 109.47258 * 59.99796 * 1 2 3 27 27 H 1.09003 * 109.47114 * 240.00474 * 2 1 3 28 28 H 1.08998 * 109.47231 * 120.00233 * 2 1 3 29 29 H 1.08999 * 109.46818 * 59.99692 * 3 2 1 30 30 H 1.08998 * 109.47124 * 300.00299 * 3 2 1 31 31 H 1.08999 * 109.47392 * 60.00043 * 4 3 2 32 32 H 1.08998 * 109.47231 * 300.00233 * 4 3 2 33 33 H 1.08999 * 109.47096 * 305.45993 * 7 5 4 34 34 H 1.09002 * 109.46359 * 65.46044 * 7 5 4 35 35 H 1.08995 * 109.47356 * 62.39175 * 8 7 5 36 36 H 1.09002 * 109.46691 * 182.39126 * 8 7 5 37 37 H 1.09002 * 109.47140 * 302.38863 * 8 7 5 38 38 H 1.09001 * 109.47063 * 295.25727 * 12 11 9 39 39 H 1.08999 * 109.47334 * 55.25834 * 12 11 9 40 40 H 0.96998 * 120.00374 * 185.01071 * 17 16 14 41 41 H 1.08992 * 117.50108 * 359.97438 * 22 13 12 42 42 H 1.09006 * 117.49508 * 145.02325 * 22 13 12 43 43 H 1.08999 * 117.49853 * 214.98112 * 23 13 12 44 44 H 1.08996 * 117.49910 * 359.97412 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6457 3.4243 -0.8406 7 6 3.6747 3.5686 1.3087 8 6 4.0646 5.0470 1.2532 9 6 5.5820 2.8868 -0.1219 10 8 6.1997 1.8560 0.0040 11 8 6.2335 4.0335 -0.3716 12 6 7.6657 3.9433 -0.5926 13 6 8.2104 5.3207 -0.9756 14 6 7.5322 5.9856 -2.1456 15 1 7.3896 7.0561 -2.1501 16 6 7.0938 5.2272 -3.2103 17 7 7.2146 3.9180 -3.1791 18 14 6.3282 6.0593 -4.6973 19 1 6.3077 7.5290 -4.4861 20 1 7.1286 5.7438 -5.9078 21 1 4.9394 5.5664 -4.8799 22 6 9.7112 5.5610 -0.7991 23 6 8.7125 6.2212 0.1550 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9288 0.8908 33 1 2.5967 3.4820 1.4450 34 1 4.1862 3.0890 2.1432 35 1 3.5208 5.5362 0.4452 36 1 3.8144 5.5245 2.2007 37 1 5.1364 5.1337 1.0745 38 1 8.1533 3.6006 0.3201 39 1 7.8652 3.2368 -1.3983 40 1 6.9737 3.3900 -3.9563 41 1 10.3103 4.7379 -0.4097 42 1 10.2078 6.2003 -1.5290 43 1 8.5525 7.2945 0.0523 44 1 8.6544 5.8324 1.1716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174744566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:16 Heat of formation + Delta-G solvation = -109.435374 kcal Electronic energy + Delta-G solvation = -21543.803569 eV Core-core repulsion = 18460.468848 eV Total energy + Delta-G solvation = -3083.334721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37845 -38.76330 -37.61981 -36.65959 -35.03130 -34.18773 -31.37674 -28.82937 -27.71974 -27.16130 -23.80188 -23.68332 -22.99595 -21.85664 -21.07909 -20.61469 -18.51521 -18.37597 -17.37877 -16.90957 -16.55304 -16.32519 -15.66442 -15.01189 -14.92024 -14.67811 -14.51972 -14.38411 -13.79079 -13.72817 -13.47043 -13.35656 -12.98635 -12.93282 -12.66240 -12.38819 -12.30646 -12.15636 -12.13498 -11.97992 -11.86058 -11.76041 -11.65144 -11.50135 -11.27550 -11.16718 -11.01280 -10.84813 -10.67948 -10.14742 -8.01068 -6.19710 1.40337 1.43264 1.45097 1.54309 2.08844 2.42268 3.04638 3.55477 3.67475 3.83274 3.85967 4.14291 4.19867 4.23540 4.28077 4.37934 4.44402 4.48134 4.60713 4.66657 4.68257 4.78656 4.82458 4.86823 4.90167 4.93026 5.01043 5.07662 5.10863 5.13788 5.19434 5.21856 5.26546 5.38644 5.44730 5.45594 5.51316 5.53193 5.59436 5.84698 5.96786 6.33279 6.79421 7.09658 7.44713 8.93157 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.005520 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.649793 B = 5071.129247 C = 5756.791524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.096 4.096 5 C -0.078 4.078 6 H 0.101 0.899 7 C -0.103 4.103 8 C -0.161 4.161 9 C 0.454 3.546 10 O -0.562 6.562 11 O -0.325 6.325 12 C 0.125 3.875 13 C 0.009 3.991 14 C -0.491 4.491 15 H 0.056 0.944 16 C 0.030 3.970 17 N -0.908 5.908 18 Si 0.953 3.047 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.189 4.189 23 C -0.186 4.186 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.020 0.980 39 H 0.084 0.916 40 H 0.257 0.743 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.751 -2.913 7.592 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.150 4.150 4 C -0.134 4.134 5 C -0.098 4.098 6 H 0.119 0.881 7 C -0.140 4.140 8 C -0.218 4.218 9 C 0.300 3.700 10 O -0.454 6.454 11 O -0.239 6.239 12 C 0.052 3.948 13 C 0.009 3.991 14 C -0.528 4.528 15 H 0.074 0.926 16 C -0.169 4.169 17 N -0.547 5.547 18 Si 0.779 3.221 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.227 4.227 23 C -0.224 4.224 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.630 -3.325 7.542 14.255 hybrid contribution 0.485 0.087 -1.093 1.199 sum -11.145 -3.238 6.448 13.277 Atomic orbital electron populations 1.21753 0.94666 1.02024 1.02210 1.21525 0.96739 0.96220 1.01880 1.21654 0.92266 0.97802 1.03252 1.21422 0.97104 0.92680 1.02211 1.21301 0.85613 1.00243 1.02610 0.88123 1.21537 1.03503 0.95412 0.93558 1.21918 1.01929 0.95694 1.02299 1.24422 0.92938 0.81305 0.71339 1.90521 1.70788 1.34907 1.49229 1.86499 1.24746 1.34005 1.78696 1.22548 0.75785 0.99239 0.97277 1.19058 0.92630 0.92121 0.95333 1.20722 1.36984 0.93103 1.02010 0.92555 1.25608 0.95210 0.95115 1.00964 1.69976 1.49769 1.05460 1.29508 0.85578 0.78071 0.79034 0.79419 1.19020 1.20737 1.20775 1.23000 0.93805 1.02879 1.03046 1.22953 1.06022 0.98810 0.94570 0.92291 0.91907 0.92740 0.92924 0.91793 0.89701 0.91667 0.93591 0.91491 0.87157 0.91863 0.92477 0.90799 0.93743 0.96200 0.89846 0.93287 0.90266 0.89728 0.89595 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.13 -2.34 5.93 30.59 0.18 -2.15 16 3 C -0.11 -2.29 4.98 30.59 0.15 -2.14 16 4 C -0.10 -2.73 3.99 30.59 0.12 -2.61 16 5 C -0.08 -2.54 2.30 -11.54 -0.03 -2.57 16 6 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 7 C -0.10 -2.63 5.26 30.59 0.16 -2.47 16 8 C -0.16 -4.54 9.64 71.98 0.69 -3.85 16 9 C 0.45 20.02 6.97 71.24 0.50 20.52 16 10 O -0.56 -27.61 15.79 21.97 0.35 -27.26 16 11 O -0.33 -15.81 7.61 -51.44 -0.39 -16.20 16 12 C 0.13 6.42 4.38 71.98 0.32 6.74 16 13 C 0.01 0.45 2.19 -52.92 -0.12 0.33 16 14 C -0.49 -26.54 8.78 25.60 0.22 -26.32 16 15 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 16 C 0.03 1.64 5.36 84.65 0.45 2.09 16 17 N -0.91 -51.34 10.29 21.45 0.22 -51.12 16 18 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 C -0.19 -8.32 9.96 30.62 0.30 -8.02 16 23 C -0.19 -7.86 9.92 30.62 0.30 -7.56 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.41 6.45 -2.39 -0.02 1.40 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.50 8.11 -2.39 -0.02 1.48 16 32 H 0.07 1.91 8.11 -2.39 -0.02 1.89 16 33 H 0.11 2.04 6.33 -2.39 -0.02 2.03 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.04 1.58 5.80 -2.39 -0.01 1.56 16 38 H 0.02 0.98 8.09 -2.39 -0.02 0.96 16 39 H 0.08 4.83 5.88 -2.39 -0.01 4.82 16 40 H 0.26 14.09 8.32 -92.71 -0.77 13.31 16 41 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.08 3.65 8.14 -2.38 -0.02 3.63 16 43 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 44 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -62.79 353.02 7.12 -55.67 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.94 Total: 23.50 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 3.98 Total: -29.50 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.22 Total: -51.12 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.04 Total: -43.46 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -62.79 7.12 -55.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174744566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.769 kcal (2) G-P(sol) polarization free energy of solvation -62.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds