Wall clock time and date at job start Mon Mar 30 2020 00:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46876 * 2 1 4 4 C 1.53003 * 109.46876 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47089 * 184.26371 * 4 3 2 6 6 H 1.09004 * 109.46906 * 53.60260 * 5 4 3 7 7 C 1.53001 * 109.47363 * 293.60232 * 5 4 3 8 8 C 1.52995 * 109.47260 * 176.38738 * 7 5 4 9 9 C 1.50701 * 109.47187 * 173.59894 * 5 4 3 10 10 O 1.20835 * 119.99756 * 33.12509 * 9 5 4 11 11 O 1.34220 * 120.00047 * 213.12435 * 9 5 4 12 12 C 1.45203 * 117.00123 * 183.57328 * 11 9 5 13 13 C 1.52996 * 109.47330 * 183.89188 * 12 11 9 14 14 C 1.50698 * 115.55243 * 65.44848 * 13 12 11 15 15 H 1.07995 * 120.00250 * 268.95252 * 14 13 12 16 16 C 1.37875 * 120.00041 * 88.94436 * 14 13 12 17 17 N 1.31513 * 120.00462 * 176.75729 * 16 14 13 18 18 Si 1.86805 * 119.99952 * 356.75721 * 16 14 13 19 19 H 1.48501 * 109.47176 * 88.87470 * 18 16 14 20 20 H 1.48503 * 109.47200 * 208.87374 * 18 16 14 21 21 H 1.48502 * 109.47043 * 328.87280 * 18 16 14 22 22 C 1.53005 * 117.49821 * 279.77944 * 13 12 11 23 23 C 1.53004 * 117.49771 * 211.11941 * 13 12 11 24 24 H 1.08999 * 109.47290 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47227 * 299.99969 * 1 2 3 26 26 H 1.09000 * 109.46933 * 60.00086 * 1 2 3 27 27 H 1.08996 * 109.46710 * 240.00021 * 2 1 3 28 28 H 1.08998 * 109.47075 * 120.00430 * 2 1 3 29 29 H 1.08998 * 109.47167 * 59.99994 * 3 2 1 30 30 H 1.09000 * 109.47269 * 299.99708 * 3 2 1 31 31 H 1.09002 * 109.46945 * 64.26601 * 4 3 2 32 32 H 1.08999 * 109.46987 * 304.26408 * 4 3 2 33 33 H 1.09004 * 109.47054 * 56.38106 * 7 5 4 34 34 H 1.09003 * 109.46656 * 296.39046 * 7 5 4 35 35 H 1.09002 * 109.47253 * 184.73849 * 8 7 5 36 36 H 1.08994 * 109.47363 * 64.74118 * 8 7 5 37 37 H 1.09004 * 109.47116 * 304.73698 * 8 7 5 38 38 H 1.08996 * 109.47235 * 303.89475 * 12 11 9 39 39 H 1.09000 * 109.47170 * 63.89092 * 12 11 9 40 40 H 0.96996 * 120.00180 * 180.02562 * 17 16 14 41 41 H 1.08994 * 117.50027 * 359.97438 * 22 13 12 42 42 H 1.08998 * 117.49635 * 145.02287 * 22 13 12 43 43 H 1.09002 * 117.49409 * 214.97654 * 23 13 12 44 44 H 1.09001 * 117.49851 * 359.97377 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8810 0.1066 6 1 3.6266 3.3637 0.9724 7 6 3.7050 3.6510 -1.1612 8 6 4.1353 5.1121 -1.0166 9 6 5.5788 2.8722 0.2642 10 8 6.2377 2.0140 -0.2738 11 8 6.1816 3.8176 1.0020 12 6 7.6328 3.7946 1.0450 13 6 8.1318 4.8769 2.0044 14 6 7.7697 4.6781 3.4536 15 1 6.8572 5.1026 3.8453 16 6 8.6032 3.9540 4.2794 17 7 8.3200 3.8341 5.5581 18 14 10.1347 3.1431 3.5820 19 1 11.2716 4.0966 3.6441 20 1 10.4601 1.9325 4.3781 21 1 9.8902 2.7557 2.1694 22 6 8.1883 6.3135 1.4810 23 6 9.4829 5.5255 1.6964 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9329 0.9964 -0.9266 32 1 3.9337 0.8638 0.8484 33 1 2.6262 3.6029 -1.3098 34 1 4.2100 3.2066 -2.0189 35 1 3.7938 5.6789 -1.8828 36 1 5.2220 5.1662 -0.9525 37 1 3.6965 5.5322 -0.1116 38 1 7.9706 2.8180 1.3915 39 1 8.0289 3.9829 0.0471 40 1 8.9066 3.3250 6.1391 41 1 7.8703 6.4875 0.4531 42 1 7.9638 7.1147 2.1850 43 1 10.1095 5.8088 2.5421 44 1 10.0164 5.1809 0.8105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174744578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:19 Heat of formation + Delta-G solvation = -98.539825 kcal Electronic energy + Delta-G solvation = -21144.572602 eV Core-core repulsion = 18061.710348 eV Total energy + Delta-G solvation = -3082.862255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.14185 -37.47672 -36.53919 -35.32388 -34.21308 -32.10143 -30.60120 -27.81660 -26.61016 -25.25450 -22.93580 -22.69863 -21.70012 -21.04497 -19.49286 -19.09031 -17.27606 -16.66753 -15.96854 -15.59253 -15.50795 -14.92814 -14.11150 -14.05061 -13.88986 -13.73063 -13.55402 -12.88863 -12.68504 -12.58921 -12.35333 -12.31516 -11.96318 -11.58472 -11.37128 -11.19321 -11.17007 -11.08369 -10.86271 -10.81784 -10.69305 -10.54079 -10.46733 -10.21606 -9.97585 -9.87194 -9.58625 -9.01895 -8.60997 -8.56602 -6.12385 -4.14982 2.69613 3.20117 3.27010 3.37084 3.40801 4.39697 4.59044 4.67358 4.77809 4.89716 4.97102 5.05743 5.09497 5.14355 5.29509 5.40142 5.47784 5.53367 5.63258 5.67466 5.67599 5.69760 5.80132 5.90732 5.92043 5.95866 5.97510 5.99806 6.06090 6.10957 6.15660 6.23714 6.29938 6.33214 6.35659 6.41491 6.66856 6.93142 7.07305 7.19424 7.69210 8.33848 8.50238 8.92696 9.50089 10.99533 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.020947 B = 0.004736 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.371604 B = 5910.850535 C = 6553.293072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.107 4.107 5 C -0.082 4.082 6 H 0.104 0.896 7 C -0.112 4.112 8 C -0.158 4.158 9 C 0.460 3.540 10 O -0.525 6.525 11 O -0.329 6.329 12 C 0.106 3.894 13 C -0.004 4.004 14 C -0.481 4.481 15 H 0.081 0.919 16 C 0.077 3.923 17 N -0.896 5.896 18 Si 0.876 3.124 19 H -0.275 1.275 20 H -0.292 1.292 21 H -0.262 1.262 22 C -0.172 4.172 23 C -0.193 4.193 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.265 0.735 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 -2.342 -12.935 17.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.145 4.145 5 C -0.101 4.101 6 H 0.122 0.878 7 C -0.149 4.149 8 C -0.215 4.215 9 C 0.304 3.696 10 O -0.415 6.415 11 O -0.244 6.244 12 C 0.033 3.967 13 C -0.005 4.005 14 C -0.519 4.519 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.533 5.533 18 Si 0.704 3.296 19 H -0.201 1.201 20 H -0.219 1.219 21 H -0.187 1.187 22 C -0.209 4.209 23 C -0.230 4.230 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.227 -2.658 -12.872 17.286 hybrid contribution 1.146 -0.602 -0.228 1.315 sum -10.081 -3.259 -13.099 16.848 Atomic orbital electron populations 1.21775 0.95986 1.01437 1.01759 1.21530 0.95668 0.96951 1.02207 1.21663 0.94649 0.96933 1.02384 1.21516 0.95355 0.94011 1.03577 1.21131 0.88810 0.98804 1.01405 0.87804 1.21542 1.01968 0.95669 0.95752 1.21854 1.02291 0.95377 1.02004 1.23631 0.91666 0.79058 0.75273 1.90596 1.67141 1.37470 1.46313 1.86569 1.24537 1.50284 1.62999 1.23014 0.75071 1.01144 0.97517 1.19320 0.95680 0.89738 0.95750 1.20219 1.08691 1.34040 0.88918 0.90071 1.24985 0.97643 0.95403 0.94517 1.69881 1.38427 1.40977 1.04008 0.86919 0.83805 0.79085 0.79780 1.20108 1.21869 1.18696 1.22817 1.01216 0.96943 0.99944 1.23008 0.91439 1.06619 1.01932 0.92949 0.92687 0.92865 0.92050 0.91882 0.91580 0.91641 0.90801 0.91263 0.90242 0.91495 0.92624 0.92323 0.91768 0.91457 0.93829 0.92499 0.90853 0.89143 0.88735 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.13 4.90 -26.73 -0.13 -1.26 16 4 C -0.11 -1.31 4.20 -26.73 -0.11 -1.42 16 5 C -0.08 -1.13 2.29 -91.77 -0.21 -1.34 16 6 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 7 C -0.11 -1.27 5.26 -26.73 -0.14 -1.41 16 8 C -0.16 -1.87 9.57 37.15 0.36 -1.51 16 9 C 0.46 8.60 6.11 36.01 0.22 8.82 16 10 O -0.53 -11.00 16.04 -18.76 -0.30 -11.30 16 11 O -0.33 -6.96 9.65 -39.23 -0.38 -7.34 16 12 C 0.11 2.38 5.02 37.16 0.19 2.57 16 13 C 0.00 -0.09 1.08 -155.66 -0.17 -0.26 16 14 C -0.48 -13.46 9.37 -34.44 -0.32 -13.78 16 15 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 17 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 18 Si 0.88 21.79 24.80 -169.99 -4.22 17.57 16 19 H -0.28 -6.60 7.08 56.52 0.40 -6.20 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.26 -6.29 5.87 56.52 0.33 -5.96 16 22 C -0.17 -3.49 9.96 -26.69 -0.27 -3.75 16 23 C -0.19 -4.07 7.61 -26.69 -0.20 -4.27 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 6.74 -51.93 -0.35 0.20 16 31 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.71 6.55 -51.93 -0.34 0.37 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.82 7.13 -51.93 -0.37 0.45 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.63 6.60 -51.93 -0.34 1.29 16 39 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 43 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -30.96 351.89 -7.66 -38.61 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.16 Total: 1.14 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.68 Total: -17.60 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.77 Total: -26.39 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.68 Total: -18.64 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.22 Total: 17.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.96 -7.66 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174744578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.925 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds