Wall clock time and date at job start Mon Mar 30 2020 00:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46876 * 2 1 4 4 C 1.53003 * 109.46876 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47089 * 184.26371 * 4 3 2 6 6 H 1.09004 * 109.46906 * 53.60260 * 5 4 3 7 7 C 1.53001 * 109.47363 * 293.60232 * 5 4 3 8 8 C 1.52995 * 109.47260 * 176.38738 * 7 5 4 9 9 C 1.50701 * 109.47187 * 173.59894 * 5 4 3 10 10 O 1.20835 * 119.99756 * 33.12509 * 9 5 4 11 11 O 1.34220 * 120.00047 * 213.12435 * 9 5 4 12 12 C 1.45203 * 117.00123 * 183.57328 * 11 9 5 13 13 C 1.52996 * 109.47330 * 183.89188 * 12 11 9 14 14 C 1.50698 * 115.55243 * 65.44848 * 13 12 11 15 15 H 1.07995 * 120.00250 * 268.95252 * 14 13 12 16 16 C 1.37875 * 120.00041 * 88.94436 * 14 13 12 17 17 N 1.31513 * 120.00462 * 176.75729 * 16 14 13 18 18 Si 1.86805 * 119.99952 * 356.75721 * 16 14 13 19 19 H 1.48501 * 109.47176 * 88.87470 * 18 16 14 20 20 H 1.48503 * 109.47200 * 208.87374 * 18 16 14 21 21 H 1.48502 * 109.47043 * 328.87280 * 18 16 14 22 22 C 1.53005 * 117.49821 * 279.77944 * 13 12 11 23 23 C 1.53004 * 117.49771 * 211.11941 * 13 12 11 24 24 H 1.08999 * 109.47290 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47227 * 299.99969 * 1 2 3 26 26 H 1.09000 * 109.46933 * 60.00086 * 1 2 3 27 27 H 1.08996 * 109.46710 * 240.00021 * 2 1 3 28 28 H 1.08998 * 109.47075 * 120.00430 * 2 1 3 29 29 H 1.08998 * 109.47167 * 59.99994 * 3 2 1 30 30 H 1.09000 * 109.47269 * 299.99708 * 3 2 1 31 31 H 1.09002 * 109.46945 * 64.26601 * 4 3 2 32 32 H 1.08999 * 109.46987 * 304.26408 * 4 3 2 33 33 H 1.09004 * 109.47054 * 56.38106 * 7 5 4 34 34 H 1.09003 * 109.46656 * 296.39046 * 7 5 4 35 35 H 1.09002 * 109.47253 * 184.73849 * 8 7 5 36 36 H 1.08994 * 109.47363 * 64.74118 * 8 7 5 37 37 H 1.09004 * 109.47116 * 304.73698 * 8 7 5 38 38 H 1.08996 * 109.47235 * 303.89475 * 12 11 9 39 39 H 1.09000 * 109.47170 * 63.89092 * 12 11 9 40 40 H 0.96996 * 120.00180 * 180.02562 * 17 16 14 41 41 H 1.08994 * 117.50027 * 359.97438 * 22 13 12 42 42 H 1.08998 * 117.49635 * 145.02287 * 22 13 12 43 43 H 1.09002 * 117.49409 * 214.97654 * 23 13 12 44 44 H 1.09001 * 117.49851 * 359.97377 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8810 0.1066 6 1 3.6266 3.3637 0.9724 7 6 3.7050 3.6510 -1.1612 8 6 4.1353 5.1121 -1.0166 9 6 5.5788 2.8722 0.2642 10 8 6.2377 2.0140 -0.2738 11 8 6.1816 3.8176 1.0020 12 6 7.6328 3.7946 1.0450 13 6 8.1318 4.8769 2.0044 14 6 7.7697 4.6781 3.4536 15 1 6.8572 5.1026 3.8453 16 6 8.6032 3.9540 4.2794 17 7 8.3200 3.8341 5.5581 18 14 10.1347 3.1431 3.5820 19 1 11.2716 4.0966 3.6441 20 1 10.4601 1.9325 4.3781 21 1 9.8902 2.7557 2.1694 22 6 8.1883 6.3135 1.4810 23 6 9.4829 5.5255 1.6964 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9329 0.9964 -0.9266 32 1 3.9337 0.8638 0.8484 33 1 2.6262 3.6029 -1.3098 34 1 4.2100 3.2066 -2.0189 35 1 3.7938 5.6789 -1.8828 36 1 5.2220 5.1662 -0.9525 37 1 3.6965 5.5322 -0.1116 38 1 7.9706 2.8180 1.3915 39 1 8.0289 3.9829 0.0471 40 1 8.9066 3.3250 6.1391 41 1 7.8703 6.4875 0.4531 42 1 7.9638 7.1147 2.1850 43 1 10.1095 5.8088 2.5421 44 1 10.0164 5.1809 0.8105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174744578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:18 Heat of formation + Delta-G solvation = -114.748329 kcal Electronic energy + Delta-G solvation = -21145.275456 eV Core-core repulsion = 18061.710348 eV Total energy + Delta-G solvation = -3083.565108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64303 -39.04666 -37.76499 -36.91125 -35.06834 -34.27815 -31.47113 -29.33369 -27.96897 -27.12603 -23.89230 -23.81959 -23.33001 -21.89363 -21.08833 -20.67814 -18.80161 -18.49998 -17.59258 -17.06914 -16.79820 -16.37759 -15.66707 -15.10325 -15.03567 -14.83161 -14.70424 -14.53148 -14.27472 -13.95499 -13.76487 -13.43759 -13.10867 -13.00381 -12.75599 -12.49397 -12.31069 -12.20620 -12.09480 -12.03806 -11.96180 -11.78901 -11.70391 -11.62986 -11.51626 -11.35505 -11.12576 -10.91976 -10.69604 -10.38955 -8.33507 -6.40176 1.21707 1.29488 1.33933 1.43465 1.76263 2.31400 2.99656 3.14337 3.58530 3.71359 3.80113 3.96194 4.13322 4.17376 4.19621 4.20961 4.29457 4.34684 4.38276 4.46914 4.56369 4.62551 4.65874 4.79491 4.81276 4.85596 4.89697 4.99927 5.03994 5.08109 5.11827 5.16677 5.20262 5.21713 5.36760 5.40798 5.43354 5.45401 5.52687 5.63288 5.64381 6.27443 6.67306 6.81753 7.28524 8.82287 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.020947 B = 0.004736 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.371604 B = 5910.850535 C = 6553.293072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.112 4.112 4 C -0.103 4.103 5 C -0.079 4.079 6 H 0.108 0.892 7 C -0.105 4.105 8 C -0.158 4.158 9 C 0.455 3.545 10 O -0.551 6.551 11 O -0.344 6.344 12 C 0.111 3.889 13 C -0.037 4.037 14 C -0.482 4.482 15 H 0.035 0.965 16 C 0.023 3.977 17 N -0.945 5.945 18 Si 0.933 3.067 19 H -0.255 1.255 20 H -0.297 1.297 21 H -0.247 1.247 22 C -0.151 4.151 23 C -0.182 4.182 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.266 0.734 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.951 -1.974 -15.625 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.149 4.149 4 C -0.141 4.141 5 C -0.098 4.098 6 H 0.126 0.874 7 C -0.142 4.142 8 C -0.216 4.216 9 C 0.300 3.700 10 O -0.442 6.442 11 O -0.259 6.259 12 C 0.038 3.962 13 C -0.038 4.038 14 C -0.519 4.519 15 H 0.053 0.947 16 C -0.175 4.175 17 N -0.585 5.585 18 Si 0.757 3.243 19 H -0.179 1.179 20 H -0.224 1.224 21 H -0.171 1.171 22 C -0.188 4.188 23 C -0.219 4.219 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.663 -2.272 -15.582 19.595 hybrid contribution 1.175 -0.684 0.630 1.499 sum -10.488 -2.956 -14.952 18.501 Atomic orbital electron populations 1.21757 0.94785 1.01957 1.02246 1.21539 0.96699 0.96461 1.01838 1.21636 0.92153 0.97639 1.03465 1.21512 0.97463 0.92608 1.02473 1.21360 0.84990 1.00312 1.03110 0.87400 1.21581 1.03969 0.94726 0.93921 1.21864 1.00579 0.96077 1.03037 1.24680 0.93473 0.77865 0.73960 1.90572 1.68121 1.38233 1.47312 1.86593 1.24007 1.51387 1.63929 1.22768 0.76116 0.99231 0.98131 1.19200 0.98768 0.92359 0.93499 1.20351 1.06868 1.33057 0.91668 0.94685 1.25794 1.01024 0.96087 0.94605 1.70023 1.40171 1.42668 1.05621 0.85995 0.80441 0.78206 0.79644 1.17950 1.22376 1.17111 1.22863 1.00095 0.94505 1.01308 1.23082 0.90813 1.05342 1.02702 0.92500 0.92677 0.91877 0.91857 0.92956 0.91322 0.89632 0.91118 0.93372 0.86866 0.91627 0.90267 0.94882 0.91989 0.94023 0.91464 0.92453 0.87689 0.89668 0.89686 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.13 -2.08 5.93 30.59 0.18 -1.90 16 3 C -0.11 -1.88 4.90 30.59 0.15 -1.73 16 4 C -0.10 -2.43 4.20 30.60 0.13 -2.30 16 5 C -0.08 -2.08 2.29 -11.54 -0.03 -2.10 16 6 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16 7 C -0.10 -2.10 5.26 30.59 0.16 -1.94 16 8 C -0.16 -3.40 9.57 71.98 0.69 -2.71 16 9 C 0.45 16.95 6.11 71.24 0.44 17.39 16 10 O -0.55 -23.08 16.04 21.94 0.35 -22.73 16 11 O -0.34 -14.61 9.65 -51.32 -0.50 -15.11 16 12 C 0.11 4.92 5.02 71.98 0.36 5.28 16 13 C -0.04 -1.73 1.08 -52.93 -0.06 -1.79 16 14 C -0.48 -27.74 9.37 25.60 0.24 -27.50 16 15 H 0.03 2.26 8.06 -2.91 -0.02 2.24 16 16 C 0.02 1.33 5.47 84.65 0.46 1.79 16 17 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 18 Si 0.93 44.94 24.80 68.60 1.70 46.64 16 19 H -0.25 -11.39 7.08 99.48 0.70 -10.68 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 21 H -0.25 -11.25 5.87 99.48 0.58 -10.67 16 22 C -0.15 -5.78 9.96 30.62 0.30 -5.48 16 23 C -0.18 -7.21 7.61 30.62 0.23 -6.98 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.12 6.74 -2.39 -0.02 1.11 16 31 H 0.07 1.71 8.05 -2.39 -0.02 1.69 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.11 1.55 6.55 -2.39 -0.02 1.54 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.03 0.87 7.13 -2.39 -0.02 0.85 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 38 H 0.04 2.02 6.60 -2.39 -0.02 2.00 16 39 H 0.07 2.62 8.09 -2.39 -0.02 2.60 16 40 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 42 H 0.08 3.34 8.14 -2.39 -0.02 3.33 16 43 H 0.08 3.53 7.16 -2.39 -0.02 3.52 16 44 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -69.47 351.89 6.64 -62.83 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.81 Total: 18.77 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 3.98 Total: -31.26 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.30 Total: -59.15 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.14 Total: -37.83 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.70 Total: 46.64 kcal Total: -69.47 6.64 -62.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174744578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.922 kcal (2) G-P(sol) polarization free energy of solvation -69.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds