Wall clock time and date at job start Mon Mar 30 2020 00:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46941 * 2 1 4 4 C 1.52999 * 109.47406 * 119.99852 * 2 1 3 5 5 C 1.52995 * 109.47242 * 81.06326 * 4 2 1 6 6 C 1.52996 * 109.47062 * 51.67326 * 5 4 2 7 7 C 1.53004 * 109.47126 * 291.67501 * 5 4 2 8 8 C 1.50697 * 109.47655 * 171.67635 * 5 4 2 9 9 O 1.20830 * 119.99461 * 5.27994 * 8 5 4 10 10 O 1.34223 * 120.00662 * 185.28091 * 8 5 4 11 11 C 1.45200 * 117.00421 * 182.41087 * 10 8 5 12 12 C 1.53002 * 109.47035 * 184.21417 * 11 10 8 13 13 C 1.50701 * 115.55379 * 305.47404 * 12 11 10 14 14 H 1.08001 * 119.99738 * 114.45818 * 13 12 11 15 15 C 1.37874 * 119.99630 * 294.18871 * 13 12 11 16 16 N 1.31512 * 119.99780 * 172.79771 * 15 13 12 17 17 Si 1.86800 * 120.00390 * 352.79222 * 15 13 12 18 18 H 1.48492 * 109.47373 * 91.46865 * 17 15 13 19 19 H 1.48500 * 109.47354 * 211.47523 * 17 15 13 20 20 H 1.48502 * 109.46883 * 331.46998 * 17 15 13 21 21 C 1.53002 * 117.49552 * 91.14643 * 12 11 10 22 22 C 1.53006 * 117.49443 * 159.80388 * 12 11 10 23 23 H 1.08993 * 109.47324 * 45.01814 * 1 2 3 24 24 H 1.08996 * 109.46874 * 165.02092 * 1 2 3 25 25 H 1.09004 * 109.46959 * 285.02031 * 1 2 3 26 26 H 1.08995 * 109.47556 * 240.00317 * 2 1 3 27 27 H 1.09004 * 109.46987 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47059 * 300.00149 * 3 2 1 29 29 H 1.09006 * 109.47392 * 60.00043 * 3 2 1 30 30 H 1.09001 * 109.46949 * 321.06206 * 4 2 1 31 31 H 1.09001 * 109.47404 * 201.06503 * 4 2 1 32 32 H 1.08999 * 109.47333 * 172.63658 * 6 5 4 33 33 H 1.08999 * 109.47393 * 292.63227 * 6 5 4 34 34 H 1.08998 * 109.47067 * 52.63394 * 6 5 4 35 35 H 1.08993 * 109.47011 * 319.78711 * 7 5 4 36 36 H 1.09005 * 109.47024 * 79.78543 * 7 5 4 37 37 H 1.08997 * 109.47517 * 199.78332 * 7 5 4 38 38 H 1.09001 * 109.47009 * 64.21438 * 11 10 8 39 39 H 1.08997 * 109.47220 * 304.21772 * 11 10 8 40 40 H 0.97004 * 120.00204 * 179.97438 * 16 15 13 41 41 H 1.08998 * 117.49668 * 214.99948 * 21 12 11 42 42 H 1.08997 * 117.49962 * 0.02562 * 21 12 11 43 43 H 1.08996 * 117.49962 * 359.97438 * 22 12 11 44 44 H 1.09003 * 117.49751 * 144.97699 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.9988 -2.2330 1.0179 6 6 2.7142 -2.5681 -0.2923 7 6 0.5431 -2.6971 0.9374 8 6 2.6873 -2.9350 2.1599 9 8 3.0778 -2.3008 3.1114 10 8 2.8669 -4.2646 2.1201 11 6 3.4891 -4.8807 3.2783 12 6 3.7050 -6.3713 3.0087 13 6 2.4770 -7.1420 2.5975 14 1 2.4143 -7.5698 1.6078 15 6 1.4360 -7.3057 3.4865 16 7 0.3092 -7.8530 3.0861 17 14 1.6261 -6.7503 5.2599 18 1 1.1511 -5.3498 5.3937 19 1 0.8223 -7.6322 6.1438 20 1 3.0563 -6.8275 5.6521 21 6 5.0416 -6.7916 2.3943 22 6 4.7434 -7.1006 3.8636 23 1 -0.3633 0.7264 -0.7268 24 1 -0.3633 -0.9927 -0.2656 25 1 -0.3633 0.2663 0.9926 26 1 1.8934 -0.5137 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.4076 -0.4663 2.0996 31 1 3.0653 -0.4128 1.4537 32 1 2.8001 -3.6501 -0.3930 33 1 2.1427 -2.1695 -1.1306 34 1 3.7094 -2.1236 -0.2870 35 1 -0.0484 -2.1692 1.6853 36 1 0.1479 -2.4831 -0.0557 37 1 0.4927 -3.7696 1.1250 38 1 2.8416 -4.7586 4.1467 39 1 4.4498 -4.4036 3.4716 40 1 -0.4231 -7.9685 3.7117 41 1 5.0328 -7.6256 1.6925 42 1 5.7673 -6.0064 2.1825 43 1 5.2731 -6.5185 4.6177 44 1 4.5382 -8.1378 4.1288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175979408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:39 Heat of formation + Delta-G solvation = -81.444642 kcal Electronic energy + Delta-G solvation = -21819.946700 eV Core-core repulsion = 18737.825748 eV Total energy + Delta-G solvation = -3082.120952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33244 -37.98330 -36.84409 -35.32743 -33.44288 -32.13315 -28.01847 -27.44705 -26.79500 -26.47202 -25.31913 -23.13798 -21.62401 -20.29920 -19.18684 -18.72837 -16.98422 -16.47156 -16.01907 -15.75049 -15.13073 -14.76799 -14.17005 -14.09939 -13.62968 -13.39027 -13.21414 -12.86191 -12.61526 -12.48755 -12.30424 -12.16148 -12.05898 -11.85007 -11.51989 -11.08056 -11.01822 -10.90230 -10.86865 -10.70930 -10.62644 -10.51539 -10.36502 -10.29629 -9.94433 -9.77102 -9.45613 -9.08919 -8.65890 -8.48005 -6.12437 -4.11770 2.71984 3.21243 3.26276 3.36105 3.40879 4.39571 4.65329 4.70832 4.80760 4.90772 5.03310 5.10466 5.16222 5.21654 5.46132 5.55251 5.56196 5.66661 5.67188 5.71204 5.82174 5.85439 5.87526 5.91776 5.95899 5.98542 6.02543 6.09527 6.12453 6.14700 6.27936 6.30769 6.36663 6.44899 6.47544 6.56233 6.63952 6.85781 7.06864 7.21386 7.69798 8.35457 8.49703 8.91278 9.50753 10.99443 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.005452 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.514544 B = 5134.035149 C = 5491.684515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.095 4.095 5 C -0.051 4.051 6 C -0.144 4.144 7 C -0.149 4.149 8 C 0.461 3.539 9 O -0.528 6.528 10 O -0.318 6.318 11 C 0.105 3.895 12 C -0.008 4.008 13 C -0.473 4.473 14 H 0.080 0.920 15 C 0.082 3.918 16 N -0.893 5.893 17 Si 0.857 3.143 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.249 1.249 21 C -0.177 4.177 22 C -0.183 4.183 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 13.757 -6.070 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.120 4.120 3 C -0.203 4.203 4 C -0.132 4.132 5 C -0.052 4.052 6 C -0.201 4.201 7 C -0.206 4.206 8 C 0.304 3.696 9 O -0.418 6.418 10 O -0.232 6.232 11 C 0.031 3.969 12 C -0.009 4.009 13 C -0.510 4.510 14 H 0.098 0.902 15 C -0.121 4.121 16 N -0.530 5.530 17 Si 0.685 3.315 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.173 1.173 21 C -0.214 4.214 22 C -0.221 4.221 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.685 13.824 -5.713 15.197 hybrid contribution 0.025 0.329 1.343 1.383 sum 2.709 14.153 -4.370 15.058 Atomic orbital electron populations 1.22208 0.95215 1.02459 1.01693 1.21277 0.96102 0.95998 0.98650 1.21855 1.00860 0.96089 1.01489 1.21672 1.02414 0.91321 0.97823 1.20472 0.96891 0.94964 0.92895 1.21976 0.99851 1.03611 0.94647 1.22168 0.92370 1.03431 1.02599 1.23688 0.76335 0.82009 0.87534 1.90582 1.48287 1.67486 1.35449 1.86599 1.71976 1.20673 1.43967 1.22846 0.95149 0.93502 0.85363 1.19335 0.91301 0.89323 1.00898 1.20167 0.97323 1.32445 1.01107 0.90236 1.24873 0.94653 0.94359 0.98213 1.69892 1.03580 1.44337 1.35229 0.87174 0.79806 0.78511 0.86057 1.20605 1.21486 1.17294 1.22831 0.99879 1.02781 0.95956 1.23073 1.04737 1.01529 0.92734 0.93144 0.91333 0.92736 0.90142 0.92793 0.92851 0.92829 0.91189 0.91236 0.90449 0.91030 0.92411 0.92170 0.90607 0.90341 0.92487 0.93253 0.92573 0.89318 0.90897 0.91148 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.39 37.16 0.31 -1.19 16 2 C -0.10 -1.03 2.71 -90.62 -0.25 -1.27 16 3 C -0.15 -1.31 9.04 37.16 0.34 -0.97 16 4 C -0.09 -1.23 3.37 -26.73 -0.09 -1.32 16 5 C -0.05 -0.76 0.74 -155.66 -0.12 -0.87 16 6 C -0.14 -1.84 7.64 37.16 0.28 -1.55 16 7 C -0.15 -2.14 7.22 37.16 0.27 -1.87 16 8 C 0.46 9.04 6.51 36.00 0.23 9.28 16 9 O -0.53 -11.35 15.60 -18.75 -0.29 -11.65 16 10 O -0.32 -7.03 9.33 -39.24 -0.37 -7.39 16 11 C 0.11 2.39 5.05 37.16 0.19 2.58 16 12 C -0.01 -0.18 1.13 -155.65 -0.18 -0.35 16 13 C -0.47 -13.04 9.12 -34.44 -0.31 -13.36 16 14 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 15 C 0.08 2.31 5.46 -17.82 -0.10 2.22 16 16 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 17 Si 0.86 21.39 25.08 -169.99 -4.26 17.13 16 18 H -0.28 -7.08 6.99 56.52 0.40 -6.68 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.25 -5.81 5.69 56.52 0.32 -5.49 16 21 C -0.18 -3.57 9.93 -26.69 -0.26 -3.84 16 22 C -0.18 -3.82 7.95 -26.69 -0.21 -4.03 16 23 H 0.05 0.42 8.05 -51.93 -0.42 0.00 16 24 H 0.07 0.65 5.00 -51.93 -0.26 0.39 16 25 H 0.05 0.53 7.78 -51.93 -0.40 0.13 16 26 H 0.08 0.77 5.41 -51.93 -0.28 0.49 16 27 H 0.05 0.48 8.13 -51.93 -0.42 0.05 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.96 7.54 -51.93 -0.39 0.57 16 31 H 0.07 0.95 7.73 -51.93 -0.40 0.54 16 32 H 0.08 1.11 7.82 -51.93 -0.41 0.70 16 33 H 0.07 0.73 6.17 -51.93 -0.32 0.41 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 36 H 0.08 0.88 5.65 -51.93 -0.29 0.58 16 37 H 0.08 1.36 7.80 -51.93 -0.41 0.95 16 38 H 0.06 1.38 5.23 -51.93 -0.27 1.11 16 39 H 0.05 1.03 7.97 -51.93 -0.41 0.62 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -30.56 339.33 -6.62 -37.18 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.69 Total: 2.15 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 0.11 Total: -16.56 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.77 Total: -25.97 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.66 Total: -19.04 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.26 Total: 17.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.56 -6.62 -37.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175979408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.268 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds