Wall clock time and date at job start Mon Mar 30 2020 00:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46941 * 2 1 4 4 C 1.52999 * 109.47406 * 119.99852 * 2 1 3 5 5 C 1.52995 * 109.47242 * 81.06326 * 4 2 1 6 6 C 1.52996 * 109.47062 * 51.67326 * 5 4 2 7 7 C 1.53004 * 109.47126 * 291.67501 * 5 4 2 8 8 C 1.50697 * 109.47655 * 171.67635 * 5 4 2 9 9 O 1.20830 * 119.99461 * 5.27994 * 8 5 4 10 10 O 1.34223 * 120.00662 * 185.28091 * 8 5 4 11 11 C 1.45200 * 117.00421 * 182.41087 * 10 8 5 12 12 C 1.53002 * 109.47035 * 184.21417 * 11 10 8 13 13 C 1.50701 * 115.55379 * 305.47404 * 12 11 10 14 14 H 1.08001 * 119.99738 * 114.45818 * 13 12 11 15 15 C 1.37874 * 119.99630 * 294.18871 * 13 12 11 16 16 N 1.31512 * 119.99780 * 172.79771 * 15 13 12 17 17 Si 1.86800 * 120.00390 * 352.79222 * 15 13 12 18 18 H 1.48492 * 109.47373 * 91.46865 * 17 15 13 19 19 H 1.48500 * 109.47354 * 211.47523 * 17 15 13 20 20 H 1.48502 * 109.46883 * 331.46998 * 17 15 13 21 21 C 1.53002 * 117.49552 * 91.14643 * 12 11 10 22 22 C 1.53006 * 117.49443 * 159.80388 * 12 11 10 23 23 H 1.08993 * 109.47324 * 45.01814 * 1 2 3 24 24 H 1.08996 * 109.46874 * 165.02092 * 1 2 3 25 25 H 1.09004 * 109.46959 * 285.02031 * 1 2 3 26 26 H 1.08995 * 109.47556 * 240.00317 * 2 1 3 27 27 H 1.09004 * 109.46987 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47059 * 300.00149 * 3 2 1 29 29 H 1.09006 * 109.47392 * 60.00043 * 3 2 1 30 30 H 1.09001 * 109.46949 * 321.06206 * 4 2 1 31 31 H 1.09001 * 109.47404 * 201.06503 * 4 2 1 32 32 H 1.08999 * 109.47333 * 172.63658 * 6 5 4 33 33 H 1.08999 * 109.47393 * 292.63227 * 6 5 4 34 34 H 1.08998 * 109.47067 * 52.63394 * 6 5 4 35 35 H 1.08993 * 109.47011 * 319.78711 * 7 5 4 36 36 H 1.09005 * 109.47024 * 79.78543 * 7 5 4 37 37 H 1.08997 * 109.47517 * 199.78332 * 7 5 4 38 38 H 1.09001 * 109.47009 * 64.21438 * 11 10 8 39 39 H 1.08997 * 109.47220 * 304.21772 * 11 10 8 40 40 H 0.97004 * 120.00204 * 179.97438 * 16 15 13 41 41 H 1.08998 * 117.49668 * 214.99948 * 21 12 11 42 42 H 1.08997 * 117.49962 * 0.02562 * 21 12 11 43 43 H 1.08996 * 117.49962 * 359.97438 * 22 12 11 44 44 H 1.09003 * 117.49751 * 144.97699 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.9988 -2.2330 1.0179 6 6 2.7142 -2.5681 -0.2923 7 6 0.5431 -2.6971 0.9374 8 6 2.6873 -2.9350 2.1599 9 8 3.0778 -2.3008 3.1114 10 8 2.8669 -4.2646 2.1201 11 6 3.4891 -4.8807 3.2783 12 6 3.7050 -6.3713 3.0087 13 6 2.4770 -7.1420 2.5975 14 1 2.4143 -7.5698 1.6078 15 6 1.4360 -7.3057 3.4865 16 7 0.3092 -7.8530 3.0861 17 14 1.6261 -6.7503 5.2599 18 1 1.1511 -5.3498 5.3937 19 1 0.8223 -7.6322 6.1438 20 1 3.0563 -6.8275 5.6521 21 6 5.0416 -6.7916 2.3943 22 6 4.7434 -7.1006 3.8636 23 1 -0.3633 0.7264 -0.7268 24 1 -0.3633 -0.9927 -0.2656 25 1 -0.3633 0.2663 0.9926 26 1 1.8934 -0.5137 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.4076 -0.4663 2.0996 31 1 3.0653 -0.4128 1.4537 32 1 2.8001 -3.6501 -0.3930 33 1 2.1427 -2.1695 -1.1306 34 1 3.7094 -2.1236 -0.2870 35 1 -0.0484 -2.1692 1.6853 36 1 0.1479 -2.4831 -0.0557 37 1 0.4927 -3.7696 1.1250 38 1 2.8416 -4.7586 4.1467 39 1 4.4498 -4.4036 3.4716 40 1 -0.4231 -7.9685 3.7117 41 1 5.0328 -7.6256 1.6925 42 1 5.7673 -6.0064 2.1825 43 1 5.2731 -6.5185 4.6177 44 1 4.5382 -8.1378 4.1288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175979408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:39 Heat of formation + Delta-G solvation = -97.843093 kcal Electronic energy + Delta-G solvation = -21820.657790 eV Core-core repulsion = 18737.825748 eV Total energy + Delta-G solvation = -3082.832042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.83566 -39.33570 -38.37491 -37.00513 -34.43390 -34.28471 -29.19141 -28.96458 -27.79661 -27.50086 -27.24709 -24.52820 -23.26608 -21.40121 -21.06503 -19.95432 -18.80399 -18.08941 -17.58964 -17.33948 -16.63141 -16.17247 -15.65061 -15.27253 -14.96601 -14.80068 -14.53963 -14.35725 -14.13215 -13.81168 -13.73000 -13.21684 -13.12721 -13.02936 -12.96656 -12.85651 -12.49890 -12.29383 -12.16366 -11.98088 -11.95988 -11.72984 -11.67283 -11.57065 -11.47282 -11.21318 -11.10030 -10.97531 -10.63501 -10.37701 -8.31615 -6.33700 1.16402 1.25668 1.31514 1.41442 1.73231 2.30977 2.95370 3.22446 3.53966 3.64892 3.77819 3.94841 4.04656 4.10676 4.14694 4.17666 4.24045 4.37411 4.42031 4.61375 4.67677 4.71560 4.75659 4.81836 4.85078 4.87110 4.89911 4.94037 4.99600 5.04871 5.11002 5.13971 5.17243 5.28756 5.33854 5.37625 5.45617 5.54184 5.59865 5.61061 5.66500 6.28990 6.68225 6.78476 7.31570 8.83969 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.005452 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.514544 B = 5134.035149 C = 5491.684515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.088 4.088 5 C -0.049 4.049 6 C -0.140 4.140 7 C -0.145 4.145 8 C 0.453 3.547 9 O -0.550 6.550 10 O -0.336 6.336 11 C 0.107 3.893 12 C -0.043 4.043 13 C -0.469 4.469 14 H 0.038 0.962 15 C 0.031 3.969 16 N -0.940 5.940 17 Si 0.910 3.090 18 H -0.289 1.289 19 H -0.288 1.288 20 H -0.219 1.219 21 C -0.157 4.157 22 C -0.170 4.170 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.265 0.735 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 15.571 -6.435 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.126 4.126 5 C -0.050 4.050 6 C -0.197 4.197 7 C -0.201 4.201 8 C 0.298 3.702 9 O -0.441 6.441 10 O -0.251 6.251 11 C 0.033 3.967 12 C -0.044 4.044 13 C -0.506 4.506 14 H 0.056 0.944 15 C -0.167 4.167 16 N -0.580 5.580 17 Si 0.735 3.265 18 H -0.216 1.216 19 H -0.214 1.214 20 H -0.141 1.141 21 C -0.194 4.194 22 C -0.208 4.208 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.122 15.638 -6.082 17.278 hybrid contribution -0.406 -0.227 1.368 1.445 sum 3.716 15.411 -4.714 16.539 Atomic orbital electron populations 1.22207 0.94695 1.02887 1.01850 1.21271 0.96475 0.96467 0.97258 1.21848 1.00947 0.95266 1.02128 1.21660 1.01936 0.89897 0.99097 1.20690 0.96553 0.95657 0.92076 1.21996 1.00782 1.02541 0.94362 1.22179 0.92468 1.00860 1.04643 1.24737 0.75801 0.81118 0.88531 1.90555 1.49361 1.67551 1.36657 1.86625 1.72346 1.22271 1.43874 1.22730 0.95703 0.93208 0.85045 1.19256 0.90994 0.89471 1.04676 1.20278 0.99242 1.31878 0.99218 0.94404 1.25575 0.94331 0.94722 1.02087 1.70021 1.04643 1.46694 1.36645 0.86331 0.81404 0.77253 0.81503 1.21584 1.21390 1.14109 1.22903 0.97765 1.03063 0.95650 1.23125 1.02616 1.01206 0.93817 0.91503 0.91430 0.93430 0.88955 0.92718 0.91228 0.93210 0.92444 0.91950 0.92457 0.87831 0.91425 0.92007 0.87338 0.94040 0.94390 0.91157 0.92610 0.89513 0.88022 0.88373 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.39 71.98 0.60 -2.01 16 2 C -0.10 -1.68 2.71 -10.79 -0.03 -1.71 16 3 C -0.14 -2.20 9.04 71.98 0.65 -1.55 16 4 C -0.09 -2.17 3.37 30.59 0.10 -2.06 16 5 C -0.05 -1.41 0.74 -52.93 -0.04 -1.45 16 6 C -0.14 -3.34 7.64 71.98 0.55 -2.79 16 7 C -0.14 -4.11 7.22 71.98 0.52 -3.59 16 8 C 0.45 17.79 6.51 71.23 0.46 18.25 16 9 O -0.55 -23.59 15.60 21.95 0.34 -23.24 16 10 O -0.34 -15.02 9.33 -51.34 -0.48 -15.50 16 11 C 0.11 4.79 5.05 71.98 0.36 5.15 16 12 C -0.04 -1.98 1.13 -52.92 -0.06 -2.04 16 13 C -0.47 -26.48 9.12 25.60 0.23 -26.25 16 14 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 15 C 0.03 1.80 5.46 84.65 0.46 2.26 16 16 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 17 Si 0.91 44.48 25.08 68.60 1.72 46.20 16 18 H -0.29 -14.46 6.99 99.48 0.70 -13.77 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 20 H -0.22 -9.51 5.69 99.48 0.57 -8.94 16 21 C -0.16 -5.96 9.93 30.62 0.30 -5.66 16 22 C -0.17 -6.62 7.95 30.62 0.24 -6.38 16 23 H 0.07 0.89 8.05 -2.39 -0.02 0.87 16 24 H 0.07 1.10 5.00 -2.39 -0.01 1.09 16 25 H 0.05 0.85 7.78 -2.38 -0.02 0.83 16 26 H 0.09 1.41 5.41 -2.39 -0.01 1.40 16 27 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 1.54 7.54 -2.39 -0.02 1.52 16 31 H 0.06 1.62 7.73 -2.39 -0.02 1.60 16 32 H 0.06 1.61 7.82 -2.39 -0.02 1.59 16 33 H 0.10 1.79 6.17 -2.39 -0.01 1.78 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.70 7.68 -2.39 -0.02 1.68 16 36 H 0.11 2.32 5.65 -2.38 -0.01 2.31 16 37 H 0.04 1.48 7.80 -2.39 -0.02 1.46 16 38 H 0.04 1.82 5.23 -2.39 -0.01 1.81 16 39 H 0.07 2.80 7.97 -2.39 -0.02 2.79 16 40 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 43 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -68.33 339.33 7.06 -61.28 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.80 Total: 19.21 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 4.37 Total: -29.83 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.30 Total: -58.12 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.14 Total: -38.74 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.72 Total: 46.20 kcal Total: -68.33 7.06 -61.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175979408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.566 kcal (2) G-P(sol) polarization free energy of solvation -68.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds