Wall clock time and date at job start Mon Mar 30 2020 00:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46787 * 2 1 4 4 C 1.52998 * 109.47428 * 119.99691 * 2 1 3 5 5 C 1.52998 * 109.47040 * 172.08378 * 4 2 1 6 6 C 1.50699 * 110.06122 * 301.78563 * 5 4 2 7 7 O 1.20827 * 119.99716 * 359.28427 * 6 5 4 8 8 O 1.34224 * 120.00030 * 179.28092 * 6 5 4 9 9 C 1.45205 * 116.99926 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47149 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.46833 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00218 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99676 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00020 * 180.02562 * 13 11 10 15 15 Si 1.86808 * 120.00111 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46677 * 89.99976 * 15 13 11 17 17 H 1.48498 * 109.46860 * 210.00085 * 15 13 11 18 18 H 1.48494 * 109.46910 * 330.00146 * 15 13 11 19 19 C 1.53874 * 110.03103 * 180.36698 * 5 4 2 20 20 C 1.54268 * 106.60077 * 240.71958 * 19 5 4 21 21 C 1.54892 * 104.19500 * 336.39094 * 20 19 5 22 22 C 1.54275 * 110.02833 * 63.20374 * 5 4 2 23 23 H 1.08996 * 109.47355 * 299.99490 * 1 2 3 24 24 H 1.09000 * 109.47609 * 60.00437 * 1 2 3 25 25 H 1.09008 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47355 * 240.00510 * 2 1 3 27 27 H 1.09007 * 109.47145 * 75.02507 * 3 2 1 28 28 H 1.08998 * 109.47450 * 195.02509 * 3 2 1 29 29 H 1.09003 * 109.47635 * 315.02517 * 3 2 1 30 30 H 1.09007 * 109.46931 * 52.08952 * 4 2 1 31 31 H 1.08994 * 109.47764 * 292.09180 * 4 2 1 32 32 H 1.08999 * 109.47297 * 300.00439 * 9 8 6 33 33 H 1.09001 * 109.46815 * 60.00681 * 9 8 6 34 34 H 1.08998 * 109.47082 * 300.00778 * 10 9 8 35 35 H 1.09001 * 109.46564 * 60.00700 * 10 9 8 36 36 H 0.97003 * 120.00151 * 180.02562 * 14 13 11 37 37 H 1.08997 * 110.03368 * 0.02562 * 19 5 4 38 38 H 1.09002 * 110.03502 * 121.43666 * 19 5 4 39 39 H 1.09002 * 110.49114 * 95.06737 * 20 19 5 40 40 H 1.08997 * 110.48827 * 217.71230 * 20 19 5 41 41 H 1.09004 * 110.75791 * 279.62833 * 21 20 19 42 42 H 1.08998 * 110.75601 * 156.25675 * 21 20 19 43 43 H 1.09002 * 110.48264 * 261.56706 * 22 5 4 44 44 H 1.08996 * 110.48726 * 24.21331 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5571 -0.8955 1.1538 6 6 3.9111 -1.6714 -0.0886 7 8 3.0374 -2.0634 -0.8255 8 8 5.1969 -1.9269 -0.3767 9 6 5.4638 -2.6799 -1.5892 10 6 6.9734 -2.8708 -1.7492 11 6 7.2503 -3.6518 -3.0079 12 1 6.4315 -3.9788 -3.6317 13 6 8.5490 -3.9488 -3.3633 14 7 8.7907 -4.6299 -4.4620 15 14 9.9652 -3.3825 -2.2847 16 1 10.2656 -4.4276 -1.2734 17 1 11.1658 -3.1488 -3.1268 18 1 9.5899 -2.1212 -1.5968 19 6 4.0829 -1.6282 2.4005 20 6 5.0740 -0.6683 3.0906 21 6 5.5409 0.2763 1.9553 22 6 4.2470 0.4842 1.1298 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.9106 1.8736 0.9928 28 1 3.0968 1.4544 -0.2664 29 1 1.4756 2.0275 -0.7263 30 1 1.5658 -1.6999 1.3228 31 1 1.7969 -0.1323 2.1336 32 1 4.9786 -3.6539 -1.5263 33 1 5.0739 -2.1345 -2.4487 34 1 7.4582 -1.8966 -1.8122 35 1 7.3636 -3.4160 -0.8897 36 1 9.7044 -4.8392 -4.7118 37 1 3.2573 -1.8600 3.0734 38 1 4.5942 -2.5450 2.1070 39 1 4.5729 -0.1022 3.8759 40 1 5.9198 -1.2217 3.4986 41 1 6.3129 -0.1992 1.3502 42 1 5.8960 1.2231 2.3621 43 1 4.4893 0.7718 0.1066 44 1 3.6123 1.2363 1.5983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176824602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:11 Heat of formation + Delta-G solvation = -115.332886 kcal Electronic energy + Delta-G solvation = -21750.199032 eV Core-core repulsion = 18666.608575 eV Total energy + Delta-G solvation = -3083.590456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.90290 -38.27701 -36.34259 -35.25017 -33.28204 -30.86188 -30.31178 -29.28675 -26.94289 -25.93653 -24.84122 -22.55138 -20.73428 -20.63981 -20.15775 -19.32099 -17.32631 -16.69519 -16.14196 -15.92486 -15.43920 -14.67021 -14.56490 -14.20627 -13.86095 -13.61977 -13.33186 -13.11116 -12.71002 -12.54521 -12.30724 -12.20534 -12.02273 -11.65605 -11.47734 -11.32687 -11.24336 -11.20296 -10.82145 -10.74683 -10.65270 -10.52155 -10.44856 -10.27185 -10.15963 -9.95059 -9.68375 -9.53837 -9.33680 -8.62773 -6.13289 -4.14389 2.53951 3.13221 3.27151 3.34554 3.38798 4.36555 4.38045 4.43979 4.57397 4.90166 4.96859 5.04686 5.16537 5.20344 5.28529 5.32177 5.41609 5.49169 5.58640 5.60023 5.66079 5.75911 5.76579 5.81276 5.85297 5.87257 5.94646 5.97031 5.98334 6.02625 6.10491 6.16787 6.21076 6.32790 6.36823 6.46293 6.49677 6.88546 7.21144 7.24048 7.62582 8.21453 8.39636 8.88527 9.46401 10.99360 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.004824 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.045450 B = 5803.437530 C = 6485.246154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.163 4.163 4 C -0.088 4.088 5 C -0.055 4.055 6 C 0.466 3.534 7 O -0.510 6.510 8 O -0.356 6.356 9 C 0.081 3.919 10 C -0.008 4.008 11 C -0.527 4.527 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.881 3.119 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.263 1.263 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.130 4.130 22 C -0.112 4.112 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.266 0.734 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.669 11.900 15.810 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C -0.220 4.220 4 C -0.125 4.125 5 C -0.056 4.056 6 C 0.309 3.691 7 O -0.399 6.399 8 O -0.272 6.272 9 C 0.009 3.991 10 C -0.045 4.045 11 C -0.565 4.565 12 H 0.093 0.907 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.707 3.293 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.188 1.188 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.168 4.168 22 C -0.149 4.149 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.752 11.677 15.437 22.644 hybrid contribution 0.695 0.000 0.217 0.728 sum -11.057 11.677 15.655 22.443 Atomic orbital electron populations 1.21775 0.95495 1.01487 1.01055 1.21454 0.95687 0.96103 1.00144 1.22409 1.02230 0.96221 1.01114 1.21613 0.91346 1.01271 0.98274 1.21213 0.97236 0.95751 0.91393 1.23433 0.81433 0.77640 0.86630 1.90562 1.49403 1.49474 1.50436 1.86493 1.27277 1.67937 1.45472 1.23355 0.99900 0.93919 0.81968 1.19603 0.89037 0.97873 0.98018 1.20853 0.94177 1.35069 1.06422 0.90705 1.24934 0.98737 0.94328 0.94970 1.69897 1.20709 1.39153 1.23780 0.86758 0.81801 0.80023 0.80679 1.20059 1.21167 1.18756 1.22233 0.99185 0.99063 0.94558 1.22315 0.98520 0.97227 0.97636 1.22620 0.97854 0.99369 0.96945 1.22855 0.96462 0.94535 1.01017 0.93319 0.92968 0.92807 0.88351 0.92897 0.91345 0.93272 0.91306 0.90933 0.91902 0.91878 0.95461 0.95900 0.92444 0.90884 0.90796 0.91705 0.91303 0.90177 0.91470 0.90657 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.13 37.16 0.34 -1.10 16 2 C -0.12 -1.36 2.64 -90.62 -0.24 -1.59 16 3 C -0.16 -1.64 7.66 37.16 0.28 -1.36 16 4 C -0.09 -0.97 3.25 -26.73 -0.09 -1.06 16 5 C -0.05 -0.68 0.63 -154.54 -0.10 -0.77 16 6 C 0.47 7.82 5.88 36.01 0.21 8.03 16 7 O -0.51 -9.69 13.43 -18.75 -0.25 -9.94 16 8 O -0.36 -6.69 9.83 -39.24 -0.39 -7.08 16 9 C 0.08 1.75 5.40 37.16 0.20 1.95 16 10 C -0.01 -0.19 4.42 -27.88 -0.12 -0.31 16 11 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 12 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 15 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 19 C -0.11 -1.25 6.06 -25.61 -0.16 -1.40 16 20 C -0.12 -1.15 6.83 -25.07 -0.17 -1.33 16 21 C -0.13 -1.39 6.91 -24.73 -0.17 -1.56 16 22 C -0.11 -1.21 3.76 -25.07 -0.09 -1.31 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 26 H 0.10 1.48 5.29 -51.93 -0.27 1.20 16 27 H 0.05 0.45 7.14 -51.93 -0.37 0.08 16 28 H 0.07 0.72 4.71 -51.93 -0.24 0.48 16 29 H 0.05 0.48 8.05 -51.93 -0.42 0.06 16 30 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 31 H 0.07 0.65 7.97 -51.93 -0.41 0.24 16 32 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 33 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 34 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 35 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 38 H 0.07 0.94 7.58 -51.93 -0.39 0.54 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.91 6.26 -51.93 -0.33 0.58 16 44 H 0.08 0.76 5.83 -51.93 -0.30 0.45 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -30.64 335.97 -7.72 -38.35 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.71 Total: -1.29 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.53 Total: -15.20 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.67 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.64 Total: -17.02 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.64 -7.72 -38.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176824602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.978 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds