Wall clock time and date at job start Mon Mar 30 2020 00:39:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53000 * 109.46787 * 2 1
4 4 C 1.52998 * 109.47428 * 119.99691 * 2 1 3
5 5 C 1.52998 * 109.47040 * 172.08378 * 4 2 1
6 6 C 1.50699 * 110.06122 * 301.78563 * 5 4 2
7 7 O 1.20827 * 119.99716 * 359.28427 * 6 5 4
8 8 O 1.34224 * 120.00030 * 179.28092 * 6 5 4
9 9 C 1.45205 * 116.99926 * 179.97438 * 8 6 5
10 10 C 1.53003 * 109.47149 * 179.97438 * 9 8 6
11 11 C 1.50701 * 109.46833 * 180.02562 * 10 9 8
12 12 H 1.08000 * 120.00218 * 0.02562 * 11 10 9
13 13 C 1.37876 * 119.99676 * 180.02562 * 11 10 9
14 14 N 1.31512 * 120.00020 * 180.02562 * 13 11 10
15 15 Si 1.86808 * 120.00111 * 359.97438 * 13 11 10
16 16 H 1.48498 * 109.46677 * 89.99976 * 15 13 11
17 17 H 1.48498 * 109.46860 * 210.00085 * 15 13 11
18 18 H 1.48494 * 109.46910 * 330.00146 * 15 13 11
19 19 C 1.53874 * 110.03103 * 180.36698 * 5 4 2
20 20 C 1.54268 * 106.60077 * 240.71958 * 19 5 4
21 21 C 1.54892 * 104.19500 * 336.39094 * 20 19 5
22 22 C 1.54275 * 110.02833 * 63.20374 * 5 4 2
23 23 H 1.08996 * 109.47355 * 299.99490 * 1 2 3
24 24 H 1.09000 * 109.47609 * 60.00437 * 1 2 3
25 25 H 1.09008 * 109.46846 * 180.02562 * 1 2 3
26 26 H 1.08996 * 109.47355 * 240.00510 * 2 1 3
27 27 H 1.09007 * 109.47145 * 75.02507 * 3 2 1
28 28 H 1.08998 * 109.47450 * 195.02509 * 3 2 1
29 29 H 1.09003 * 109.47635 * 315.02517 * 3 2 1
30 30 H 1.09007 * 109.46931 * 52.08952 * 4 2 1
31 31 H 1.08994 * 109.47764 * 292.09180 * 4 2 1
32 32 H 1.08999 * 109.47297 * 300.00439 * 9 8 6
33 33 H 1.09001 * 109.46815 * 60.00681 * 9 8 6
34 34 H 1.08998 * 109.47082 * 300.00778 * 10 9 8
35 35 H 1.09001 * 109.46564 * 60.00700 * 10 9 8
36 36 H 0.97003 * 120.00151 * 180.02562 * 14 13 11
37 37 H 1.08997 * 110.03368 * 0.02562 * 19 5 4
38 38 H 1.09002 * 110.03502 * 121.43666 * 19 5 4
39 39 H 1.09002 * 110.49114 * 95.06737 * 20 19 5
40 40 H 1.08997 * 110.48827 * 217.71230 * 20 19 5
41 41 H 1.09004 * 110.75791 * 279.62833 * 21 20 19
42 42 H 1.08998 * 110.75601 * 156.25675 * 21 20 19
43 43 H 1.09002 * 110.48264 * 261.56706 * 22 5 4
44 44 H 1.08996 * 110.48726 * 24.21331 * 22 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 3.5571 -0.8955 1.1538
6 6 3.9111 -1.6714 -0.0886
7 8 3.0374 -2.0634 -0.8255
8 8 5.1969 -1.9269 -0.3767
9 6 5.4638 -2.6799 -1.5892
10 6 6.9734 -2.8708 -1.7492
11 6 7.2503 -3.6518 -3.0079
12 1 6.4315 -3.9788 -3.6317
13 6 8.5490 -3.9488 -3.3633
14 7 8.7907 -4.6299 -4.4620
15 14 9.9652 -3.3825 -2.2847
16 1 10.2656 -4.4276 -1.2734
17 1 11.1658 -3.1488 -3.1268
18 1 9.5899 -2.1212 -1.5968
19 6 4.0829 -1.6282 2.4005
20 6 5.0740 -0.6683 3.0906
21 6 5.5409 0.2763 1.9553
22 6 4.2470 0.4842 1.1298
23 1 -0.3634 0.5137 0.8900
24 1 -0.3634 0.5137 -0.8900
25 1 -0.3633 -1.0278 0.0005
26 1 1.8933 -0.5137 -0.8900
27 1 1.9106 1.8736 0.9928
28 1 3.0968 1.4544 -0.2664
29 1 1.4756 2.0275 -0.7263
30 1 1.5658 -1.6999 1.3228
31 1 1.7969 -0.1323 2.1336
32 1 4.9786 -3.6539 -1.5263
33 1 5.0739 -2.1345 -2.4487
34 1 7.4582 -1.8966 -1.8122
35 1 7.3636 -3.4160 -0.8897
36 1 9.7044 -4.8392 -4.7118
37 1 3.2573 -1.8600 3.0734
38 1 4.5942 -2.5450 2.1070
39 1 4.5729 -0.1022 3.8759
40 1 5.9198 -1.2217 3.4986
41 1 6.3129 -0.1992 1.3502
42 1 5.8960 1.2231 2.3621
43 1 4.4893 0.7718 0.1066
44 1 3.6123 1.2363 1.5983
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000176824602.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:39:11
Heat of formation + Delta-G solvation = -115.332886 kcal
Electronic energy + Delta-G solvation = -21750.199032 eV
Core-core repulsion = 18666.608575 eV
Total energy + Delta-G solvation = -3083.590456 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.90290 -38.27701 -36.34259 -35.25017 -33.28204 -30.86188 -30.31178 -29.28675
-26.94289 -25.93653 -24.84122 -22.55138 -20.73428 -20.63981 -20.15775 -19.32099
-17.32631 -16.69519 -16.14196 -15.92486 -15.43920 -14.67021 -14.56490 -14.20627
-13.86095 -13.61977 -13.33186 -13.11116 -12.71002 -12.54521 -12.30724 -12.20534
-12.02273 -11.65605 -11.47734 -11.32687 -11.24336 -11.20296 -10.82145 -10.74683
-10.65270 -10.52155 -10.44856 -10.27185 -10.15963 -9.95059 -9.68375 -9.53837
-9.33680 -8.62773 -6.13289 -4.14389 2.53951 3.13221 3.27151 3.34554
3.38798 4.36555 4.38045 4.43979 4.57397 4.90166 4.96859 5.04686
5.16537 5.20344 5.28529 5.32177 5.41609 5.49169 5.58640 5.60023
5.66079 5.75911 5.76579 5.81276 5.85297 5.87257 5.94646 5.97031
5.98334 6.02625 6.10491 6.16787 6.21076 6.32790 6.36823 6.46293
6.49677 6.88546 7.21144 7.24048 7.62582 8.21453 8.39636 8.88527
9.46401 10.99360
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.023288 B = 0.004824 C = 0.004316
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1202.045450 B = 5803.437530 C = 6485.246154
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.116 4.116
3 C -0.163 4.163
4 C -0.088 4.088
5 C -0.055 4.055
6 C 0.466 3.534
7 O -0.510 6.510
8 O -0.356 6.356
9 C 0.081 3.919
10 C -0.008 4.008
11 C -0.527 4.527
12 H 0.075 0.925
13 C 0.073 3.927
14 N -0.897 5.897
15 Si 0.881 3.119
16 H -0.275 1.275
17 H -0.286 1.286
18 H -0.263 1.263
19 C -0.113 4.113
20 C -0.119 4.119
21 C -0.130 4.130
22 C -0.112 4.112
23 H 0.048 0.952
24 H 0.051 0.949
25 H 0.053 0.947
26 H 0.099 0.901
27 H 0.052 0.948
28 H 0.068 0.932
29 H 0.048 0.952
30 H 0.068 0.932
31 H 0.072 0.928
32 H 0.063 0.937
33 H 0.063 0.937
34 H 0.027 0.973
35 H 0.023 0.977
36 H 0.266 0.734
37 H 0.072 0.928
38 H 0.073 0.927
39 H 0.064 0.936
40 H 0.068 0.932
41 H 0.080 0.920
42 H 0.067 0.933
43 H 0.075 0.925
44 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.669 11.900 15.810 22.973
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.134 4.134
3 C -0.220 4.220
4 C -0.125 4.125
5 C -0.056 4.056
6 C 0.309 3.691
7 O -0.399 6.399
8 O -0.272 6.272
9 C 0.009 3.991
10 C -0.045 4.045
11 C -0.565 4.565
12 H 0.093 0.907
13 C -0.130 4.130
14 N -0.535 5.535
15 Si 0.707 3.293
16 H -0.201 1.201
17 H -0.212 1.212
18 H -0.188 1.188
19 C -0.150 4.150
20 C -0.157 4.157
21 C -0.168 4.168
22 C -0.149 4.149
23 H 0.067 0.933
24 H 0.070 0.930
25 H 0.072 0.928
26 H 0.116 0.884
27 H 0.071 0.929
28 H 0.087 0.913
29 H 0.067 0.933
30 H 0.087 0.913
31 H 0.091 0.909
32 H 0.081 0.919
33 H 0.081 0.919
34 H 0.045 0.955
35 H 0.041 0.959
36 H 0.076 0.924
37 H 0.091 0.909
38 H 0.092 0.908
39 H 0.083 0.917
40 H 0.087 0.913
41 H 0.098 0.902
42 H 0.085 0.915
43 H 0.093 0.907
44 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -11.752 11.677 15.437 22.644
hybrid contribution 0.695 0.000 0.217 0.728
sum -11.057 11.677 15.655 22.443
Atomic orbital electron populations
1.21775 0.95495 1.01487 1.01055 1.21454 0.95687 0.96103 1.00144
1.22409 1.02230 0.96221 1.01114 1.21613 0.91346 1.01271 0.98274
1.21213 0.97236 0.95751 0.91393 1.23433 0.81433 0.77640 0.86630
1.90562 1.49403 1.49474 1.50436 1.86493 1.27277 1.67937 1.45472
1.23355 0.99900 0.93919 0.81968 1.19603 0.89037 0.97873 0.98018
1.20853 0.94177 1.35069 1.06422 0.90705 1.24934 0.98737 0.94328
0.94970 1.69897 1.20709 1.39153 1.23780 0.86758 0.81801 0.80023
0.80679 1.20059 1.21167 1.18756 1.22233 0.99185 0.99063 0.94558
1.22315 0.98520 0.97227 0.97636 1.22620 0.97854 0.99369 0.96945
1.22855 0.96462 0.94535 1.01017 0.93319 0.92968 0.92807 0.88351
0.92897 0.91345 0.93272 0.91306 0.90933 0.91902 0.91878 0.95461
0.95900 0.92444 0.90884 0.90796 0.91705 0.91303 0.90177 0.91470
0.90657 0.89721
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.44 9.13 37.16 0.34 -1.10 16
2 C -0.12 -1.36 2.64 -90.62 -0.24 -1.59 16
3 C -0.16 -1.64 7.66 37.16 0.28 -1.36 16
4 C -0.09 -0.97 3.25 -26.73 -0.09 -1.06 16
5 C -0.05 -0.68 0.63 -154.54 -0.10 -0.77 16
6 C 0.47 7.82 5.88 36.01 0.21 8.03 16
7 O -0.51 -9.69 13.43 -18.75 -0.25 -9.94 16
8 O -0.36 -6.69 9.83 -39.24 -0.39 -7.08 16
9 C 0.08 1.75 5.40 37.16 0.20 1.95 16
10 C -0.01 -0.19 4.42 -27.88 -0.12 -0.31 16
11 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16
12 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16
13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16
14 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16
15 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16
16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16
17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
18 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16
19 C -0.11 -1.25 6.06 -25.61 -0.16 -1.40 16
20 C -0.12 -1.15 6.83 -25.07 -0.17 -1.33 16
21 C -0.13 -1.39 6.91 -24.73 -0.17 -1.56 16
22 C -0.11 -1.21 3.76 -25.07 -0.09 -1.31 16
23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
25 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16
26 H 0.10 1.48 5.29 -51.93 -0.27 1.20 16
27 H 0.05 0.45 7.14 -51.93 -0.37 0.08 16
28 H 0.07 0.72 4.71 -51.93 -0.24 0.48 16
29 H 0.05 0.48 8.05 -51.93 -0.42 0.06 16
30 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16
31 H 0.07 0.65 7.97 -51.93 -0.41 0.24 16
32 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16
33 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16
34 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16
35 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16
36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16
37 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16
38 H 0.07 0.94 7.58 -51.93 -0.39 0.54 16
39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
41 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16
42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
43 H 0.07 0.91 6.26 -51.93 -0.33 0.58 16
44 H 0.08 0.76 5.83 -51.93 -0.30 0.45 16
LS Contribution 335.97 15.07 5.06 5.06
Total: -1.00 -30.64 335.97 -7.72 -38.35
By element:
Atomic # 1 Polarization: 6.42 SS G_CDS: -7.71 Total: -1.29 kcal
Atomic # 6 Polarization: -14.66 SS G_CDS: -0.53 Total: -15.20 kcal
Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.67 kcal
Atomic # 8 Polarization: -16.38 SS G_CDS: -0.64 Total: -17.02 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -30.64 -7.72 -38.35 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000176824602.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -76.978 kcal
(2) G-P(sol) polarization free energy of solvation -30.639 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal
(6) G-S(sol) free energy of system = (1) + (5) -115.333 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds