Wall clock time and date at job start Mon Mar 30 2020 00:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46787 * 2 1 4 4 C 1.52998 * 109.47428 * 119.99691 * 2 1 3 5 5 C 1.52998 * 109.47040 * 172.08378 * 4 2 1 6 6 C 1.50699 * 110.06122 * 301.78563 * 5 4 2 7 7 O 1.20827 * 119.99716 * 359.28427 * 6 5 4 8 8 O 1.34224 * 120.00030 * 179.28092 * 6 5 4 9 9 C 1.45205 * 116.99926 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47149 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.46833 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00218 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99676 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00020 * 180.02562 * 13 11 10 15 15 Si 1.86808 * 120.00111 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46677 * 89.99976 * 15 13 11 17 17 H 1.48498 * 109.46860 * 210.00085 * 15 13 11 18 18 H 1.48494 * 109.46910 * 330.00146 * 15 13 11 19 19 C 1.53874 * 110.03103 * 180.36698 * 5 4 2 20 20 C 1.54268 * 106.60077 * 240.71958 * 19 5 4 21 21 C 1.54892 * 104.19500 * 336.39094 * 20 19 5 22 22 C 1.54275 * 110.02833 * 63.20374 * 5 4 2 23 23 H 1.08996 * 109.47355 * 299.99490 * 1 2 3 24 24 H 1.09000 * 109.47609 * 60.00437 * 1 2 3 25 25 H 1.09008 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47355 * 240.00510 * 2 1 3 27 27 H 1.09007 * 109.47145 * 75.02507 * 3 2 1 28 28 H 1.08998 * 109.47450 * 195.02509 * 3 2 1 29 29 H 1.09003 * 109.47635 * 315.02517 * 3 2 1 30 30 H 1.09007 * 109.46931 * 52.08952 * 4 2 1 31 31 H 1.08994 * 109.47764 * 292.09180 * 4 2 1 32 32 H 1.08999 * 109.47297 * 300.00439 * 9 8 6 33 33 H 1.09001 * 109.46815 * 60.00681 * 9 8 6 34 34 H 1.08998 * 109.47082 * 300.00778 * 10 9 8 35 35 H 1.09001 * 109.46564 * 60.00700 * 10 9 8 36 36 H 0.97003 * 120.00151 * 180.02562 * 14 13 11 37 37 H 1.08997 * 110.03368 * 0.02562 * 19 5 4 38 38 H 1.09002 * 110.03502 * 121.43666 * 19 5 4 39 39 H 1.09002 * 110.49114 * 95.06737 * 20 19 5 40 40 H 1.08997 * 110.48827 * 217.71230 * 20 19 5 41 41 H 1.09004 * 110.75791 * 279.62833 * 21 20 19 42 42 H 1.08998 * 110.75601 * 156.25675 * 21 20 19 43 43 H 1.09002 * 110.48264 * 261.56706 * 22 5 4 44 44 H 1.08996 * 110.48726 * 24.21331 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5571 -0.8955 1.1538 6 6 3.9111 -1.6714 -0.0886 7 8 3.0374 -2.0634 -0.8255 8 8 5.1969 -1.9269 -0.3767 9 6 5.4638 -2.6799 -1.5892 10 6 6.9734 -2.8708 -1.7492 11 6 7.2503 -3.6518 -3.0079 12 1 6.4315 -3.9788 -3.6317 13 6 8.5490 -3.9488 -3.3633 14 7 8.7907 -4.6299 -4.4620 15 14 9.9652 -3.3825 -2.2847 16 1 10.2656 -4.4276 -1.2734 17 1 11.1658 -3.1488 -3.1268 18 1 9.5899 -2.1212 -1.5968 19 6 4.0829 -1.6282 2.4005 20 6 5.0740 -0.6683 3.0906 21 6 5.5409 0.2763 1.9553 22 6 4.2470 0.4842 1.1298 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.9106 1.8736 0.9928 28 1 3.0968 1.4544 -0.2664 29 1 1.4756 2.0275 -0.7263 30 1 1.5658 -1.6999 1.3228 31 1 1.7969 -0.1323 2.1336 32 1 4.9786 -3.6539 -1.5263 33 1 5.0739 -2.1345 -2.4487 34 1 7.4582 -1.8966 -1.8122 35 1 7.3636 -3.4160 -0.8897 36 1 9.7044 -4.8392 -4.7118 37 1 3.2573 -1.8600 3.0734 38 1 4.5942 -2.5450 2.1070 39 1 4.5729 -0.1022 3.8759 40 1 5.9198 -1.2217 3.4986 41 1 6.3129 -0.1992 1.3502 42 1 5.8960 1.2231 2.3621 43 1 4.4893 0.7718 0.1066 44 1 3.6123 1.2363 1.5983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176824602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:10 Heat of formation + Delta-G solvation = -131.359803 kcal Electronic energy + Delta-G solvation = -21750.894011 eV Core-core repulsion = 18666.608575 eV Total energy + Delta-G solvation = -3084.285436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.13872 -39.45992 -37.73039 -36.23902 -35.37720 -32.81608 -31.30848 -30.11453 -27.75375 -27.55182 -26.08952 -23.89045 -22.55378 -21.53658 -21.06201 -20.56997 -19.12938 -18.20380 -17.50089 -17.44299 -16.43682 -16.25452 -15.75031 -15.41478 -15.18693 -14.86259 -14.67111 -14.38837 -14.07826 -13.60555 -13.43352 -13.26619 -13.11616 -13.01520 -12.83211 -12.59477 -12.50494 -12.34077 -12.16433 -11.98327 -11.83745 -11.66023 -11.60070 -11.57300 -11.40844 -11.31323 -11.25534 -11.03167 -10.83907 -10.79994 -8.36946 -6.45524 1.19000 1.35866 1.37735 1.50565 1.74068 2.32210 2.97786 3.41688 3.53635 3.61056 3.97887 4.07332 4.11862 4.13636 4.16788 4.29786 4.44520 4.47003 4.56682 4.58052 4.64243 4.77263 4.83159 4.85947 4.89356 4.92270 5.00048 5.00459 5.06399 5.09316 5.18072 5.21237 5.25026 5.29175 5.35272 5.37355 5.46532 5.49860 5.52891 5.57509 5.74285 6.12831 6.60197 6.77882 7.19776 8.79333 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.004824 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.045450 B = 5803.437530 C = 6485.246154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C -0.160 4.160 4 C -0.084 4.084 5 C -0.050 4.050 6 C 0.458 3.542 7 O -0.536 6.536 8 O -0.355 6.355 9 C 0.093 3.907 10 C 0.001 3.999 11 C -0.545 4.545 12 H 0.033 0.967 13 C 0.013 3.987 14 N -0.944 5.944 15 Si 0.954 3.046 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.245 1.245 19 C -0.114 4.114 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.108 4.108 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.271 0.729 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.579 14.196 19.341 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.138 4.138 3 C -0.217 4.217 4 C -0.121 4.121 5 C -0.051 4.051 6 C 0.303 3.697 7 O -0.426 6.426 8 O -0.272 6.272 9 C 0.020 3.980 10 C -0.037 4.037 11 C -0.582 4.582 12 H 0.051 0.949 13 C -0.185 4.185 14 N -0.583 5.583 15 Si 0.776 3.224 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.168 1.168 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.170 4.170 22 C -0.145 4.145 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.684 13.979 18.977 26.307 hybrid contribution 0.545 -0.751 -0.966 1.340 sum -11.139 13.228 18.011 24.969 Atomic orbital electron populations 1.21747 0.94404 1.01226 1.02139 1.21405 0.96682 0.96905 0.98781 1.22386 1.01612 0.95034 1.02672 1.21669 0.89932 1.01292 0.99245 1.21432 0.98479 0.96017 0.89196 1.24609 0.80123 0.77242 0.87765 1.90566 1.49771 1.50594 1.51709 1.86497 1.29080 1.67699 1.43886 1.22881 0.98325 0.93733 0.83101 1.19419 0.90726 0.97410 0.96125 1.21114 0.93501 1.35863 1.07754 0.94898 1.25952 1.01948 0.94136 0.96446 1.70042 1.21822 1.40580 1.25902 0.85605 0.77536 0.80458 0.78797 1.18688 1.20409 1.16785 1.22300 1.00274 0.98362 0.94259 1.22327 0.98269 0.96749 0.97677 1.22631 0.96892 1.00513 0.96974 1.22913 0.97048 0.93991 1.00547 0.91019 0.93077 0.93779 0.92506 0.90293 0.92136 0.93212 0.92404 0.87337 0.92998 0.93011 0.94748 0.94886 0.91989 0.88521 0.93139 0.88829 0.91297 0.93046 0.89217 0.92366 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.13 71.98 0.66 -1.96 16 2 C -0.12 -2.65 2.64 -10.79 -0.03 -2.68 16 3 C -0.16 -2.86 7.66 71.98 0.55 -2.30 16 4 C -0.08 -1.66 3.25 30.59 0.10 -1.56 16 5 C -0.05 -1.16 0.63 -52.20 -0.03 -1.19 16 6 C 0.46 15.61 5.88 71.24 0.42 16.03 16 7 O -0.54 -21.27 13.43 21.96 0.30 -20.98 16 8 O -0.36 -13.61 9.83 -51.36 -0.50 -14.12 16 9 C 0.09 4.17 5.40 71.98 0.39 4.56 16 10 C 0.00 0.03 4.42 29.85 0.13 0.16 16 11 C -0.54 -32.18 9.66 25.60 0.25 -31.93 16 12 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 13 C 0.01 0.78 5.47 84.65 0.46 1.24 16 14 N -0.94 -59.26 13.96 21.45 0.30 -58.96 16 15 Si 0.95 43.79 27.47 68.60 1.88 45.67 16 16 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 19 C -0.11 -2.25 6.06 31.32 0.19 -2.06 16 20 C -0.11 -1.78 6.83 31.67 0.22 -1.56 16 21 C -0.13 -2.45 6.91 31.89 0.22 -2.23 16 22 C -0.11 -2.08 3.76 31.67 0.12 -1.96 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.06 1.76 5.29 -2.39 -0.01 1.74 16 27 H 0.08 1.00 7.14 -2.38 -0.02 0.98 16 28 H 0.06 1.18 4.71 -2.39 -0.01 1.17 16 29 H 0.05 0.87 8.05 -2.39 -0.02 0.85 16 30 H 0.06 1.27 8.13 -2.38 -0.02 1.25 16 31 H 0.11 1.41 7.97 -2.39 -0.02 1.39 16 32 H 0.05 2.40 8.13 -2.39 -0.02 2.38 16 33 H 0.05 2.39 8.13 -2.39 -0.02 2.37 16 34 H 0.03 1.63 7.20 -2.39 -0.02 1.61 16 35 H 0.03 1.54 7.57 -2.39 -0.02 1.53 16 36 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.10 1.45 7.67 -2.39 -0.02 1.43 16 38 H 0.05 1.23 7.58 -2.39 -0.02 1.21 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.25 8.00 -2.39 -0.02 1.23 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.34 6.26 -2.39 -0.01 1.32 16 44 H 0.11 1.53 5.83 -2.39 -0.01 1.52 16 Total: -1.00 -69.39 335.97 6.51 -62.88 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.90 Total: 12.94 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 3.64 Total: -27.44 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.30 Total: -58.96 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.21 Total: -35.10 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -69.39 6.51 -62.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176824602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.480 kcal (2) G-P(sol) polarization free energy of solvation -69.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds